<div><p>Water samples were collected on monthly trips to the SPOT station in the San Pedro Basin.</p>
<p>Cruise logs are available at: <a href="http://dornsife.usc.edu/spot/document-access/" target="_blank">http://dornsife.usc.edu/spot/document-access/</a></p></div>
Environmental measurements from ARISA samples, San Pedro Channel, 5 depths
<div><p>All measurements were taken from August 2000 – January 2011 at five depths from the San Pedro Channel 5m, the Deep Chlorophyll Maximum (DCM or CMAX), 150m, 500m, 890m.<span style="font-size:12.7272720336914px"> Additional data will be added periodically.</span></p>
<p><strong>Related Dataset:</strong><br /><a href="http://www.bco-dmo.org/dataset/535915" target="_blank">ARISA Relative Abundances</a><br /><a href="http://www.bco-dmo.org/dataset/535507" target="_blank">ARISA Bin Taxonomy</a><br /><a href="http://www.bco-dmo.org/dataset/536264" target="_blank">SPOT cruises</a></p></div>
SPOT environmental data
<div><p>Detailed information on the <strong><a href="http://dmoserv3.whoi.edu/data_docs/Bact_Arch_Prot_Biodiversity/Cram_Suppl_Methods.pdf" target="_blank">methodology</a></strong> (pdf), including:<br />
Satellite measurements<br />
Assigning Taxonomic Identities to ARISA peaks<br />
Environmental parameter variability<br />
Seasonal variability of microbial community structure<br />
Mantel test approach<br />
Interannual variability of microbial community structure<br />
Alpha diversity: <br />
Variability between depths<br />
Relation to season<br />
Relation to community similarity between depths<br />
Relation to community change<br />
Environmental parameters and community structure: Mantel tests<br />
Temporal dynamics of microbial taxa over time<br />
Transformations<br />
Taxonomic Groups<br />
OTUs</p>
<p><strong>Relevent References:</strong></p>
<p>Beman JM, Steele JA, Fuhrman JA. (2011). Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California. ISME J 5: 1077-1085.</p>
<p>* Cram JA, Chow C-ET, Sachdeva R, et al. (2014) Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years. The ISME Journal. doi: 10.1038/ismej.2014.153.</p>
<p>Frouin R, Franz BA, Werdell PJ (2003) The SeaWiFS PAR product. Algorithm updates for the fourth SeaWiFS data reprocessing 46-50.</p>
<p>Fuhrman J, Azam F (1982) Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters - evaluation and field results. marine biology 66:109-120.</p>
<p>Kirchman D, K’nees E, Hodson R (1985) Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems. Appl Environ Microbiol 49:599-607.</p>
<p>Morel A, Gentili B (2009) A simple band ratio technique to quantify the colored dissolved and detrital organic material from ocean color remotely sensed data. Remote Sensing of Environment 113:998-1011. doi: 10.1016/j.rse.2009.01.008</p>
<p>Noble RT, Fuhrman JA. (1998). Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat. Microb. Ecol 14: 113-118.</p>
<p>Parsons TR (1984) A manual of chemical and biological methods for seawater analysis, 1st ed. Pergamon Press, Oxford [Oxfordshire]; New York</p>
<p>Patel A, Noble RT, Steele JA, Schwalbach MS, Hewson I, Fuhrman JA. (2007). Virus and prokaryote enumeration from planktonic aquatic environments by<br />
epifluorescence microscopy with SYBR Green I. Nat Protoc 2: 269-276.</p>
<p>Stramski D, Reynolds RA, Babin M, et al. (2008) Relationships between the surface concentration of particulate organic carbon and optical properties in the eastern South Pacific and eastern Atlantic Oceans. Biogeosciences 5:171-201.</p>
<p><strong>BCO-DMO Processing:</strong></p>
<p>- added conventional header with dataset name, PI name, version date<br />
- renamed parameters to BCO-DMO standard or more descriptive terms<br />
- split data into physical and biological datasets to reduce overall size of each dataset<br />
- replaced NA with nd<br />
- reformated data from m/d/yyyy to yyyy-mm-dd<br />
- changed year from 1 or 2 digits to 4 digits<br />
- added lat, lon, cruise_id, cruise_id2<br />
- <span style="font-size:12.7272720336914px">missing</span><span style="font-size:12.7272720336914px"> </span><span style="font-size:13px">depth data added from </span><a href="http://dornsife.usc.edu/spot/document-access/" style="font-size: 13px; line-height: 1.6;" target="_blank">CTD logs</a><span style="font-size:13px"> where available</span></p></div>
537137
SPOT environmental data
2014-11-03T14:10:37-05:00
2014-11-03T14:10:37-05:00
2023-07-07T16:10:26-04:00
urn:bcodmo:dataset:537137
Environmental measurements from ARISA samples, San Pedro Channel, 5 depths , 2014 (Bacterial, Archaeal, and Protistan Biodiversity project, Marine Viral Dynamics project)
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Fuhrman, J. A. (2014) Environmental measurements from ARISA samples, San Pedro Channel, 5 depths , 2014 (Bacterial, Archaeal, and Protistan Biodiversity project, Marine Viral Dynamics project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2014-11-05) Version Date 2014-11-03 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/537137 [access date]
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