http://lod.bco-dmo.org/id/dataset/537751
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-11-06
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Sequence accession numbers for coral acid rich proteins (CARPs) from Stylophora pistillata; analyzed in the Falkowski lab at Rutgers from 2010-2014 (CROA project)
2014-11-06
publication
2014-11-06
revision
BCO-DMO Linked Data URI
2014-11-06
creation
http://lod.bco-dmo.org/id/dataset/537751
Paul G. Falkowski
Rutgers University
principalInvestigator
Yair Rosenthal
Rutgers University
principalInvestigator
Oscar M.E. Schofield
Rutgers University
principalInvestigator
Robert M. Sherrell
Rutgers University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Falkowski, P. G., Sherrell, R. M., Rosenthal, Y., Schofield, O. M. (2014) Sequence accession numbers for coral acid rich proteins (CARPs) from Stylophora pistillata; analyzed in the Falkowski lab at Rutgers from 2010-2014 (CROA project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 06 Nov 2014) Version Date 2014-11-06 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/537751 [access date]
Sequence accession numbers for coral acid rich proteins (CARPs) from Stylophora pistillata. Dataset Description: <p>Refer to the following publication for more information:<br />
Mass, T., Jeana&nbsp;L. Drake, L. Haramaty, J. D. Kim, E. Zelzion, D. Bhattacharya &amp; Paul&nbsp;G. Falkowski. 2013. Cloning and characterization of four novel coral acid-rich proteins that precipitate carbonates in&nbsp;vitro. Current Biology, 23(12): 1126-1131. doi: <a href="http://dx.doi.org/10.1016/j.cub.2013.05.007" target="_blank">10.1016/j.cub.2013.05.007</a></p> Methods and Sampling: <p>Methods are described in their entirety in the <a href="http://dmoserv3.whoi.edu/data_docs/CROA/Mass_et_al_2013_Current_Biology_SI.pdf" target="_blank">Supplemental Information file of Mass et al. 2013 (PDF)</a>.</p>
Funding provided by NSF Emerging Frontiers Division (NSF EF) Award Number: EF-1041143 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1041143
completed
Paul G. Falkowski
Rutgers University
848-932-3426
Institute of Marine & Coastal Sciences 71 Dudley Road, Cook Campus
New Brunswick
NJ
08901
USA
falko@imcs.rutgers.edu
pointOfContact
Yair Rosenthal
Rutgers University
71 Dudley Road
New Brunswick
NJ
08901
United States
rosentha@marine.rutgers.edu
pointOfContact
Oscar M.E. Schofield
Rutgers University
732-932-6555 x548
Institute of Marine and Coastal Studies 71 Dudley Road
New Brunswick
NJ
08901-8525
USA
oscar@marine.rutgers.edu
pointOfContact
Robert M. Sherrell
Rutgers University
848-932-3403
Rutgers Inorganic Analytical Laboratory (RIAL) 71 Dudley Rd
New Brunswick
NJ
08901-8521
USA
sherrell@marine.rutgers.edu
pointOfContact
asNeeded
Dataset Version: 06 Nov 2014
Unknown
accession_number
species
description
accession_num_link
BD Influx Mariner 209S Flow Cytometer
Perkin Elmer-Cetus 480 thermal cycler
theme
None, User defined
accession number
species scientific name (binomial)
No BCO-DMO term
absorbance
featureType
BCO-DMO Standard Parameters
Flow Cytometer
Thermal Cycler
instrument
BCO-DMO Standard Instruments
lab_Falkowski
service
Deployment Activity
New Brunswick, NJ
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
The Molecular Basis of Ocean Acidification Effects on Calcification in Zooxanthellate Corals
http://corals.marine.rutgers.edu/
The Molecular Basis of Ocean Acidification Effects on Calcification in Zooxanthellate Corals
<p><em>From the NSF award abstract:</em></p>
<p>Ocean acidification (the decrease in seawater pH) is driven by the increase in atmospheric CO2. This is expected to have a dramatic effect on organisms that precipitate calcium carbonate. Coral reefs are formed and maintained by calcifying organisms, particularly reef-building corals. Current predictions are that coral species will be negatively impacted; however the limited number of available measurements exhibit significant variability for reasons that are not understood. This is critically important as coral reef ecosystems hold significant cultural and economic values both nationally and internationally. This program is therefore focused on the molecular basis for calcification in corals in order to understand how corals will respond to ocean acidification in the next century. Rutgers University has a state-of-art coral culture facility that will be used to simulate future ocean conditions. The work will utilize a unique set of coral tissue cultures that will allow scientists to assess the cellular biology that underlies the responses of corals to ocean acidification. The laboratory measurements will also determine how geochemical signatures of corals are affected by varying environmental conditions. These results are important because coral geochemical signatures are used to understand how corals have responded to changes in the ocean pH in the historical past. The project will be conducted by a research team at Rutgers, in collaboration with scientists in Taiwan and Israel.</p>
CROA
largerWorkCitation
project
eng; USA
oceans
New Brunswick, NJ
2014-11-06
laboratory-based in New Brunswick, NJ
0
BCO-DMO catalogue of parameters from Sequence accession numbers for coral acid rich proteins (CARPs) from Stylophora pistillata; analyzed in the Falkowski lab at Rutgers from 2010-2014 (CROA project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/537944.rdf
Name: accession_number
Units: dimensionless
Description: <p>GenBank accession number.<br />
</p>
http://lod.bco-dmo.org/id/dataset-parameter/537945.rdf
Name: species
Units: text
Description: <p>Name of the species.</p>
http://lod.bco-dmo.org/id/dataset-parameter/537946.rdf
Name: description
Units: text
Description: <p>Description of the sequence type.</p>
http://lod.bco-dmo.org/id/dataset-parameter/537947.rdf
Name: accession_num_link
Units: dimensionless
Description: <p>Hyperlink to GenBank for the specific accession number.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
786
https://datadocs.bco-dmo.org/file/EKKygYzH142v0X/CARP_accessions.csv
CARP_accessions.csv
Primary data file for dataset ID 537751
download
https://osprey.bco-dmo.org/dataset/537751/data/download
download
onLine
dataset
<p>Methods are described in their entirety in the <a href="http://dmoserv3.whoi.edu/data_docs/CROA/Mass_et_al_2013_Current_Biology_SI.pdf" target="_blank">Supplemental Information file of Mass et al. 2013 (PDF)</a>.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
BD Influx Mariner 209S Flow Cytometer
BD Influx Mariner 209S Flow Cytometer
PI Supplied Instrument Name: BD Influx Mariner 209S Flow Cytometer PI Supplied Instrument Description:Flow cytometry analysis was performed on cells from different interfaces using a BD Influx Mariner 209S Flow Cytometer. Total genomic DNA of the Symbiodinium spp.-free cell fraction was extracted from harvested cells using a blood and cell culture DNA mini kit (Qiagen) with small modifications. Instrument Name: Flow Cytometer Instrument Short Name:Flow Cytometer Instrument Description: Flow cytometers (FC or FCM) are automated instruments that quantitate properties of single cells, one cell at a time. They can measure cell size, cell granularity, the amounts of cell components such as total DNA, newly synthesized DNA, gene expression as the amount messenger RNA for a particular gene, amounts of specific surface receptors, amounts of intracellular proteins, or transient signalling events in living cells.
(from: http://www.bio.umass.edu/micro/immunology/facs542/facswhat.htm) Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB37/
Perkin Elmer-Cetus 480 thermal cycler
Perkin Elmer-Cetus 480 thermal cycler
PI Supplied Instrument Name: Perkin Elmer-Cetus 480 thermal cycler PI Supplied Instrument Description:Amplifications of the 16S and 18S rRNA were performed using a Perkin Elmer-Cetus 480 thermal cycler. Instrument Name: Thermal Cycler Instrument Short Name:Thermal Cycler Instrument Description: A thermal cycler or "thermocycler" is a general term for a type of laboratory apparatus, commonly used for performing polymerase chain reaction (PCR), that is capable of repeatedly altering and maintaining specific temperatures for defined periods of time. The device has a thermal block with holes where tubes with the PCR reaction mixtures can be inserted. The cycler then raises and lowers the temperature of the block in discrete, pre-programmed steps. They can also be used to facilitate other temperature-sensitive reactions, including restriction enzyme digestion or rapid diagnostics.
(adapted from http://serc.carleton.edu/microbelife/research_methods/genomics/pcr.html)
Deployment: lab_Falkowski
lab_Falkowski
Rutgers_New_Brunswick
laboratory
lab_Falkowski
Paul G. Falkowski
Rutgers University
Rutgers_New_Brunswick
laboratory