http://lod.bco-dmo.org/id/dataset/541282
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-12-03
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Continuous carbonate chemistry data from Whiskey Creek Shellfish Hatchery, Netarts Bay, OR, USA in 2009 (Mechanisms of bivalve response to acidification project)
2014-12-03
publication
2014-12-03
revision
BCO-DMO Linked Data URI
2014-12-03
creation
http://lod.bco-dmo.org/id/dataset/541282
George G. Waldbusser
Oregon State University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Waldbusser, G. G. (2014) Continuous carbonate chemistry data from Whiskey Creek Shellfish Hatchery, Netarts Bay, OR, USA in 2009 (Mechanisms of bivalve response to acidification project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 03 December 2014) Version Date 2014-12-03 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/541282 [access date]
Continuous carbonate chemistry data from Whiskey Creek Shellfish Hatchery 2009. Dataset Description: <p>Continuous carbonate chemistry data from Whiskey Creek Shellfish Hatchery 2009. Barton et al. 2012 contains all information on data collection, analytical procedures, and uncertainties.</p>
<p>For more information, refer to:<br />
Barton, A., Hales, B., Waldbusser, G.G., Langdon, C., &amp; Feely, R.A. 2009. The Pacific oyster, <em>Crassostrea gigas</em>, shows negative correlation to naturally elevated carbon dioxide levels: Implications for near-term ocean acidification effects. Limnol. Oceanogr., 57(3), 698-710. doi: <a href="http://dx.doi.org/10.4319/lo.2012.57.3.0698" target="_blank">10.4319/lo.2012.57.3.0698</a></p> Methods and Sampling: <p>Sampling and Analytical methods included in Barton et al. 2012. Instrument used: Yellow Springs Instruments (YSI) 6000 EDS sonde. Temperature and salinity are directly from instrument. pH_tot is corrected from pHNBS as described in paper. Saturation state is then computed from correlation with pHtotal as noted in Barton et al. 2012. Instrument specifications indicate an accuracy of ± 0.2 pH units and a precision of ± 0.01 pH units. As noted in paper, instrument performance is checked against discrete samples.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1041267 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1041267
completed
George G. Waldbusser
Oregon State University
541-737-8964
Oregon State University 104 COAS Admin. Bldg.,
Corvallis
OR
97331
USA
waldbuss@coas.oregonstate.edu
pointOfContact
asNeeded
Dataset Version: 03 December 2014
Unknown
julian_day
month
day
year
time
temp
sal
pH_tot
omega_A
YSI Sonde 6-Series
theme
None, User defined
year day (Day of Year, or day of year and decimal time)
month of year
day of month
year
time of day
water temperature at measurement depth
salinity
pH
Aragonite Saturation State
featureType
BCO-DMO Standard Parameters
YSI Sonde 6-Series
instrument
BCO-DMO Standard Instruments
Waldbusser_WCSH
service
Deployment Activity
Netarts Bay, OR, USA
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
A mechanistic understanding of the impacts of ocean acidification on the early life stages of marine bivalves
https://osprey.bco-dmo.org/project/2167
A mechanistic understanding of the impacts of ocean acidification on the early life stages of marine bivalves
<p><em>Extracted from the NSF award abstract:</em></p>
<p>The shift in the carbonate chemistry of marine waters, as a result of direct anthropogenic CO2 addition and climate-driven changes in circulation, poses a threat to many organisms. A rapidly expanding body of literature has shown that increasing levels of carbonic acid and decreasing carbonate ion levels will have deleterious effects on many marine organisms; however little is known about the mode of action of these changes in water chemistry on marine bivalves. Many marine organisms, particularly bivalves, depend critically on the production of calcium carbonate mineral, and this material becomes thermodynamically unstable under more acidic conditions. The actual mineral precipitation, however, takes place within interstitial volumes intermittently separated from ambient seawater by biological membranes. Therefore, abiotic relationships between solid phase minerals and seawater thermodynamics are oversimplified representations of the complex interplay among seawater chemistry, bivalve physiology, and shell growth processes.</p>
<p>In this integrative, multi-disciplinary project we will develop and apply novel experimental approaches to elucidate fundamental physiological responses to changes in seawater chemistry associated with ocean acidification. The four primary objectives of this project are to: 1) develop a novel experimental approach and system capable of unique combinations of pCO2, pH, and mineral saturation state (Ω), 2) conduct short-term exploratory experiments to determine bivalve responses to different carbonate system variables, 3) conduct longer-term directed studies of the integrated effects of different carbonate system variables over early life history of bivalves, and 4) compare these biological responses among a group of bivalve species that differ in shell mineralogy and nativity to the periodically acidified upwelling region of the Pacific Northwest coast of North America. By isolating the effects of different components of the carbonate system on the early life stages of marine bivalves, e.g. does an oyster larvae respond more strongly to pCO2 or mineral saturation state?, we can begin to identify the mechanisms behind bivalve responses as well as understand how these organisms survive in transiently corrosive conditions.</p>
<p>Laboratory based experiments on three primary taxa (oyster, mussel, clam) having native and non-native species pairs to Oregon’s coastal waters: oysters <em>Ostrea lurida </em>and <em>Crassostrea gigas</em>; mussels <em>Mytilus califonianus</em> and <em>Mytilus galloprovincialis</em>; and clams <em>Macoma nasuta</em> and <em>Ruditapes philippinarum</em>, will allow for species comparisons among different shell mineralogy, microstructure, life-history, and adaptability. High-precision pCO2 and dissolved inorganic carbon (DIC) instruments will be used in experiments to control and properly constrain the carbonate chemistry. A compliment of response variables will be measured across the early life stages of these species that include tissue acid-base balance, shell mineralogy and chemistry, respiration rate, and behavior. Additionally, our emphasis will be placed on observation of development, growth, and shell structure by directly linking observational data with other measured response data. An adaptive strategy using short-term experiments to determine the most salient variables in the carbonate system to manipulate in longer-term studies is being employed. This approach allows us to evaluate acute effects, mimicking diurnal changes to carbonate variables often found in coastal areas, and integrated chronic effects mimicking a more gradual acidification due to the rise in atmospheric CO2.</p>
Mechanisms of bivalve response to acidification
largerWorkCitation
project
eng; USA
oceans
Netarts Bay, OR, USA
2014-12-03
Coastal and estuarine waters of Oregon, U.S.A.
0
BCO-DMO catalogue of parameters from Continuous carbonate chemistry data from Whiskey Creek Shellfish Hatchery, Netarts Bay, OR, USA in 2009 (Mechanisms of bivalve response to acidification project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/541479.rdf
Name: julian_day
Units: unitless
Description: <p>Julian day of the year. Named 'YSI_DOY' in original data file.</p>
http://lod.bco-dmo.org/id/dataset-parameter/541480.rdf
Name: month
Units: unitless
Description: <p>2-digit month of year. Calculated from julian_day.</p>
http://lod.bco-dmo.org/id/dataset-parameter/541481.rdf
Name: day
Units: unitless
Description: <p>2-digit day of month. Calculated from julian_day.</p>
http://lod.bco-dmo.org/id/dataset-parameter/541482.rdf
Name: year
Units: unitless
Description: <p>4-digit year.</p>
http://lod.bco-dmo.org/id/dataset-parameter/541483.rdf
Name: time
Units: unitless
Description: <p>Time formatted as 2-digit hour, 2-digit minutes, and decimal minutes; 24-hour clock. Calculated from julian_day.</p>
http://lod.bco-dmo.org/id/dataset-parameter/541484.rdf
Name: temp
Units: degress Celsius
Description: <p>Temperature in degrees Celsius. Named 'YSI_T' in original data file.</p>
http://lod.bco-dmo.org/id/dataset-parameter/541485.rdf
Name: sal
Units: practical salinity units (PSU)
Description: <p>Salinity in PSU. Named 'YSI_S' in original data file.</p>
http://lod.bco-dmo.org/id/dataset-parameter/541486.rdf
Name: pH_tot
Units: unitless
Description: <p>pH on the total scale corrected from the NBS scale as outline in Barton et al. 2012 paper. Named 'YSI_pH_total_cor' in original data file.</p>
http://lod.bco-dmo.org/id/dataset-parameter/541487.rdf
Name: omega_A
Units: unitless
Description: <p>Saturation state with respect to aragonite computed from correlation with pH_tot as described in Barton et al. 2012 paper. Named 'YSI_omega2' in original data file.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
963027
https://datadocs.bco-dmo.org/file/JEE1nOqHyZMNjv/barton_continuous.csv
barton_continuous.csv
Primary data file for dataset ID 541282
download
https://osprey.bco-dmo.org/dataset/541282/data/download
download
onLine
dataset
<p>Sampling and Analytical methods included in Barton et al. 2012. Instrument used: Yellow Springs Instruments (YSI) 6000 EDS sonde. Temperature and salinity are directly from instrument. pH_tot is corrected from pHNBS as described in paper. Saturation state is then computed from correlation with pHtotal as noted in Barton et al. 2012. Instrument specifications indicate an accuracy of ± 0.2 pH units and a precision of ± 0.01 pH units. As noted in paper, instrument performance is checked against discrete samples.</p>
Specified by the Principal Investigator(s)
<p>pH and saturation state (omega_A) are calculated as noted above and within Barton et al. 2012.</p>
<p>BCO-DMO edits made:<br />
- modified parameter names to conform with BCO-DMO naming conventions;<br />
- calculated month, day, and time using year and julian_day values;<br />
- replaced 'NAN' with 'nd' to indicate 'no data'.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
YSI Sonde 6-Series
YSI Sonde 6-Series
PI Supplied Instrument Name: YSI Sonde 6-Series PI Supplied Instrument Description:pH was recorded by an in situ Yellow Springs Instruments (YSI) 6000 EDS sonde. Instrument Name: YSI Sonde 6-Series Instrument Short Name:YSI Sonde 6-Series Instrument Description: YSI 6-Series water quality sondes and sensors are instruments for environmental monitoring and long-term deployments. YSI datasondes accept multiple water quality sensors (i.e., they are multiparameter sondes). Sondes can measure temperature, conductivity, dissolved oxygen, depth, turbidity, and other water quality parameters. The 6-Series includes several models. More from YSI. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0737/
Deployment: Waldbusser_WCSH
Waldbusser_WCSH
Whiskey Creek Shellfish Hatchery
shoreside
Waldbusser_WCSH
George G. Waldbusser
Oregon State University
Whiskey Creek Shellfish Hatchery
shoreside