http://lod.bco-dmo.org/id/dataset/543730
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-12-22
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Proteomic sample collection locations from R/V Atlantic Explorer cruises at the BATS site, Bermuda Atlantic Time-Series, Hydrostation from 2009-2012 (Ocean Microbial Observatory project)
2015-02-17
publication
2015-02-17
revision
BCO-DMO Linked Data URI
2015-02-17
creation
http://lod.bco-dmo.org/id/dataset/543730
Craig A. Carlson
University of California-Santa Barbara
principalInvestigator
Stephen Giovannoni
Oregon State University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Carlson, C. A., Giovannoni, S. (2015) Proteomic sample collection locations from R/V Atlantic Explorer cruises at the BATS site, Bermuda Atlantic Time-Series, Hydrostation from 2009-2012 (Ocean Microbial Observatory project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2015-02-17 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/543730 [access date]
Proteomic sample collection locations Dataset Description: <p>Locations of large volume collections of seawater used to measure the proteomes of bacterioplankton communities in the NW Sargasso Sea, 2009-2012.</p> Methods and Sampling: <p>None provided yet.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0802004 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0802004
onGoing
Craig A. Carlson
University of California-Santa Barbara
(805) 893-2541
University of California Department of Ecology, Evolution and Marine Biology
Santa Barbara
CA
93106-6150
USA
craig_carlson@ucsb.edu
pointOfContact
Stephen Giovannoni
Oregon State University
541-737-1835
OSU/Department of Microbiology Nash Hall Rm 248
Corvallis
OR
97331
United States
stephen.giovannoni@oregonstate.edu
pointOfContact
asNeeded
Unknown
cruise_id
cruise_id2
cast
ISO_DateTime_UTC
lon
lat
depth
volume
theme
None, User defined
Cruise identfier
cast
ISO_DateTime_UTC
longitude
latitude
depth
volume
featureType
BCO-DMO Standard Parameters
AE0912
AE0914
AE0923
AE1004
AE1103
AE1114
AE1126
AE1215
AE1224
AE1017
AE1030
service
Deployment Activity
BATS site
Bermuda Atlantic Time-Series, Hydrostation
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Transitions in the Surface Layer and the Role of Vertically Stratified Microbial Communities in the Carbon Cycle - An Oceanic Microbial Observatory
http://www.bios.edu/research/projects/oceanic-microbial-observatory/
Transitions in the Surface Layer and the Role of Vertically Stratified Microbial Communities in the Carbon Cycle - An Oceanic Microbial Observatory
<p>(<em>Adapted from the NSF award abstract</em>)</p>
<p>The premise of this project is that stratified bacterioplankton clades engage in specialized biogeochemical activities that can be identified by integrated oceanographic and microbiological approaches. Specifically, the objective of this project is to assess if the mesopelagic microbial community rely on diagenetically altered organic matter and subcellular fragments that are produced by microbial processes in the euphotic zone and delivered into the upper mesopelagic by sinking or mixing. In past efforts this microbial observatory had greater success cultivating members of the euphotic zone microbial community, and revealed an unanticipated growth requirement for reduced sulfur compounds in alphaproteobacteria of the SAR11 clade. Genomic information showed that intense competition for substrates imposes trade-offs on bacterioplankton - there are regions of N dimensional nutrient space where specialists win. We postulate that specific growth requirements may explain some the regular spatial and temporal patterns that have been observed in upper mesopelagic bacterioplankton communities, and the difficulties of culturing some of these organisms.</p>
<p>The specific objectives of this project are: 1) to produce 13C and 15N labeled subcellular (e.g., soluble, cell wall, and membrane) and DOM fractions from photosynthetic plankton cultures and use stable isotope probing to identify specific clades in the surface and upper mesopelagic microbial community that assimilate fractions of varying composition and lability. 2) to use fluorescence in situ hybridization approaches to monitor temporal and spatial variability of specific microbial populations identified from the SIP and HTC experiments. To increase resolution we will use CARD-FISH protocols. 3) to measure the proteomes of bacterioplankton communities to identify highly translated genes in the surface layer and upper mesopelagic, and community responses to seasonal nutrient limitation. 4) and, to cultivate these organisms via high throughput culturing (HTC) by pursuing the hypothesis that they require specific nutrient factors and/or diagenetically altered organic substrates. Complete genome sequences from key organisms will be sought and used as queries to study patterns of natural variation in genes and populations that have been associated with biogeochemically important functions.</p>
Ocean Microbial Observatory
largerWorkCitation
project
eng; USA
oceans
BATS site; Bermuda Atlantic Time-Series, Hydrostation
-64.5115
-64.4889
31.6638
32.1842
2009-06-18
2012-09-20
Bermuda Atlantic Time-Series study site
0
BCO-DMO catalogue of parameters from Proteomic sample collection locations from R/V Atlantic Explorer cruises at the BATS site, Bermuda Atlantic Time-Series, Hydrostation from 2009-2012 (Ocean Microbial Observatory project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/543746.rdf
Name: cruise_id
Units: unitless
Description: <p>UNOLS cruise identification</p>
http://lod.bco-dmo.org/id/dataset-parameter/543747.rdf
Name: cruise_id2
Units: unitless
Description: <p>cruise during which sample was collected</p>
http://lod.bco-dmo.org/id/dataset-parameter/543748.rdf
Name: cast
Units: unitless
Description: <p>Cast number</p>
http://lod.bco-dmo.org/id/dataset-parameter/543749.rdf
Name: ISO_DateTime_UTC
Units: yyyyMMdd'T'HH:mm
Description: <p>date and time at start of cast formatted as yyyyMMdd'T'HH:mm</p>
http://lod.bco-dmo.org/id/dataset-parameter/543750.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude at start of cast; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/543751.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude at start of cast; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/543752.rdf
Name: depth
Units: meters
Description: <p>depth of sample collection</p>
http://lod.bco-dmo.org/id/dataset-parameter/543753.rdf
Name: volume
Units: lliters
Description: <p>total collected volume in liters</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://osprey.bco-dmo.org/dataset/543730/data/download
download
onLine
dataset
<p>None provided yet.</p>
Specified by the Principal Investigator(s)
<p>None provided yet.</p>
<p><strong>BCO-DMO Processing:</strong></p>
<p>- added conventional header with dataset name, PI name, version date, reference information<br />
- renamed parameters to BCO-DMO standard<br />
- added UNOLS cruise id's</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: AE0912
AE0912
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE0912
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE0914
AE0914
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE0914
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE0923
AE0923
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE0923
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE1004
AE1004
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE1004
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE1103
AE1103
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE1103
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE1114
AE1114
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE1114
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE1126
AE1126
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE1126
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE1215
AE1215
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE1215
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE1224
AE1224
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE1224
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE1017
AE1017
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE1017
Craig A. Carlson
University of California-Santa Barbara
Cruise: AE1030
AE1030
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE1030
Craig A. Carlson
University of California-Santa Barbara
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel