http://lod.bco-dmo.org/id/dataset/553054
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-03-04
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Size and development data on amphipod Caprella collected from Japanese tsunami marine debris along the Hawaii, Washington and Oregon coasts during 2012 (JTMD-BF project)
2015-02-27
publication
2015-02-27
revision
BCO-DMO Linked Data URI
2015-02-27
creation
http://lod.bco-dmo.org/id/dataset/553054
John Chapman
Oregon State University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Chapman, J. (2015) Size and development data on amphipod Caprella collected from Japanese tsunami marine debris along the Hawaii, Washington and Oregon coasts during 2012 (JTMD-BF project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2015-02-27) Version Date 2015-02-27 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/553054 [access date]
Amphipod Caprella size and development collected on Japanese tsunami marine debris Dataset Description: <p>A major objective of the JTMD project was to characterize the biodiversity of the arriving and landed JTMD fauna and flora. This dataset includes length and reproductive development of <em>Caprella</em> spp.&nbsp;amphipods collected from the debris.</p>
<p>Access to this data is temporarily RESTRICTED. &nbsp;Please contact the PI's for further information.</p> Methods and Sampling: <p>Amphipod specimens were collected from Japanese tsunami marine debris (JTMD) from 2012-2014 at coastal sites in Oregon.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1266397 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1266397
onGoing
John Chapman
Oregon State University
541-737-4531
2030 SE Marine Science Drive
Newport
OR
USA
john.chapman@oregonstate.edu
pointOfContact
asNeeded
Dataset Version: 2015-02-27
Unknown
entry_num
biofoul_object
sample
date_coll
specimen_id
origin
species
len_body
len_pereo2
len_pereo1
sex
develop
comments
theme
None, User defined
sample identification
date_local
x/y coordinate origin
species scientific name (binomial)
length
sex
No BCO-DMO term
comments
featureType
BCO-DMO Standard Parameters
Microscope - Optical
instrument
BCO-DMO Standard Instruments
JTMD_2012
service
Deployment Activity
Hawaii, Washington and Oregon coast
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Testing the Invasion Process: Survival, Dispersal, Genetic Characterization and Attenuation of Marine Biota on the 2011 Japanese Tsunami Marine Debris Field.
https://osprey.bco-dmo.org/project/471584
Testing the Invasion Process: Survival, Dispersal, Genetic Characterization and Attenuation of Marine Biota on the 2011 Japanese Tsunami Marine Debris Field.
<p><strong>I. Biodiversity; Population and Food Web Analysis; Viability and Reproductive Condition; Dispersal Track and Growth History; Shellfish Pathogens/Parasites</strong></p>
<p>This project seeks to document the biodiversity of Japanese species on arriving tsunami-generated debris, through morphological and genetic identification (including massively parallel DNA sequencing of whole community samples) andthrough quantitative replicate samples to determine numerical abundance, density, frequency, and biomass. In addition, species accumulation and rarefaction curves will be determinded to estimate total inbound diversity.</p>
<p><em>Focuses include</em>:</p>
<p>- Population structure of selected taxa, based on size/age class distributions.<br />
- Viability and reproductive condition of selected taxa, based on fecundity, gonadal indices, and/or spore production, upon arrival.<br />
- Food web analyses based upon tissue stable isotope ratios <em>(</em>δ13C and δ15N<em>).</em><br />
- Dispersal track and growth history of selected taxa based on oxygen isotopic and elemental composition of shell calcite.<br />
- Identity and prevalence of parasites and pathogens in oysters (<em>Crassostrea gigas</em>) and mussels (<em>Mytilus galloprovincialis</em>).</p>
<p><strong>II. Biotic Attrition Over Time</strong></p>
<p>Comparison of dead species assemblages on JTMD to live assemblages to assess the fate and alteration of debris communities over time.</p>
<p><strong>III. Genetic Matching of Novel Invasions With JTMD Biota</strong></p>
<p>Genetically characterize populations of target species so that if and when new invasions are detected, or when previously established invasions appear to be newly expanding or appearing in new locations, genetic studies can be undertaken to determine if these events are related to the JTMD phenomenon.</p>
<p>This is a Rapid Response Grant.</p>
<p>2020-09-30: Final data was not submitted for this project. The data for this research are available at the Dryad data depository (<a href="http://dx.doi.org/10.5061/dryad.rh01m">http://dx.doi.org/10.5061/dryad.rh01m</a>). Contact Dr. Carlton for more information.</p>
JTMD-BF
largerWorkCitation
project
eng; USA
biota
oceans
Hawaii, Washington and Oregon coast
2015-02-27
North Pacific Ocean (W and E)
0
BCO-DMO catalogue of parameters from Size and development data on amphipod Caprella collected from Japanese tsunami marine debris along the Hawaii, Washington and Oregon coasts during 2012 (JTMD-BF project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/553061.rdf
Name: entry_num
Units: unitless
Description: <p>record entry number</p>
http://lod.bco-dmo.org/id/dataset-parameter/553062.rdf
Name: biofoul_object
Units: unitless
Description: <p>biofouling sample identification</p>
http://lod.bco-dmo.org/id/dataset-parameter/553063.rdf
Name: sample
Units: unitless
Description: <p>JTMD sample number</p>
http://lod.bco-dmo.org/id/dataset-parameter/553064.rdf
Name: date_coll
Units: unitless
Description: <p>local date collected</p>
http://lod.bco-dmo.org/id/dataset-parameter/553065.rdf
Name: specimen_id
Units: unitless
Description: <p>specimen identifcation number</p>
http://lod.bco-dmo.org/id/dataset-parameter/553066.rdf
Name: origin
Units: unitless
Description: <p>origin of specimen: Japan or Oregon</p>
http://lod.bco-dmo.org/id/dataset-parameter/553067.rdf
Name: species
Units: unitless
Description: <p>species name</p>
http://lod.bco-dmo.org/id/dataset-parameter/553068.rdf
Name: len_body
Units: millimeters
Description: <p>body length</p>
http://lod.bco-dmo.org/id/dataset-parameter/553069.rdf
Name: len_pereo2
Units: millimeters
Description: <p>length of pereopod 2</p>
http://lod.bco-dmo.org/id/dataset-parameter/553070.rdf
Name: len_pereo1
Units: millimeters
Description: <p>length of pereopod 1</p>
http://lod.bco-dmo.org/id/dataset-parameter/553071.rdf
Name: sex
Units: unitless
Description: <p>sex: I = Intersex; J = juvenile; F = female; M = male; X=bad sample/torn/missing 7th pereopod</p>
http://lod.bco-dmo.org/id/dataset-parameter/553072.rdf
Name: develop
Units: unitless
Description: <p>reproductive condition: intersex; brood; post-brood; juvenile; pre-brood; male; female</p>
http://lod.bco-dmo.org/id/dataset-parameter/553073.rdf
Name: comments
Units: unitless
Description: <p>comments</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://osprey.bco-dmo.org/dataset/553054/data/download
download
onLine
dataset
<p>Amphipod specimens were collected from Japanese tsunami marine debris (JTMD) from 2012-2014 at coastal sites in Oregon.</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing:</strong></p>
<p>- added conventional header with dataset name, PI name, version date<br />
- renamed parameters to BCO-DMO standard<br />
- replaced spaces with underscores<br />
- changed blank cells to nd</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: Instrument Name: Microscope - Optical Instrument Short Name: Instrument Description: Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope". Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB05/
Deployment: JTMD_2012
JTMD_2012
Carlton_shore
shoreside
JTMD_2012
Dr James T. Carlton
Williams College
Carlton_shore
shoreside