http://lod.bco-dmo.org/id/dataset/554572
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-03-30
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Experimental results on the carbonate chemistry of mussel growth from the Bodega Marine Laboratory in 2013 (OMEGAS-MaS project)
2015-03-26
publication
2015-03-26
revision
BCO-DMO Linked Data URI
2015-03-26
creation
http://lod.bco-dmo.org/id/dataset/554572
Kristy J. Kroeker
University of California-Santa Cruz
principalInvestigator
Eric Sanford
University of California - Davis: Bodega Marine Laboratory
principalInvestigator
Brian Gaylord
University of California - Davis: Bodega Marine Laboratory
principalInvestigator
Tessa M. Hill
University of California - Davis: Bodega Marine Laboratory
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Kroeker, K. J., Sanford, E., Gaylord, B., Hill, T. M. (2015) Experimental results on the carbonate chemistry of mussel growth from the Bodega Marine Laboratory in 2013 (OMEGAS-MaS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2015-03-26) Version Date 2015-03-26 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/554572 [access date]
Carbonate chemistry of mussel growth experiment Dataset Description: <p>Measurements of mussel growth during an experiment conducted in February-March 2013 under controlled pH and temperature conditions. This dataset includes the carbonate chemistry measured during the experiment.</p>
<p><strong>Related Reference:</strong></p>
<p>These data are published in Kroeker, KJ, Gaylord B, Hill TM, Hosfelt JD, Miller SH, Sanford E. (2014) The role of temperature in determining species' vulnerability to ocean acidification: A case study using Mytilus galloprovincialis. PLoS ONE 9(7): e100353 (<a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100353" target="_blank">link</a>)</p> Methods and Sampling: <p>See related reference for <a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100353" target="_blank">methodology</a>.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1041089 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1041089
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1220648 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1220648
onGoing
Kristy J. Kroeker
University of California-Santa Cruz
831-566-8253
100 Shaffer Road
Santa Cruz
CA
95060
USA
kkroeker@ucsc.edu
pointOfContact
Eric Sanford
University of California - Davis: Bodega Marine Laboratory
P.O. Box 247 2099 Westshore Road
Bodega Bay
CA
94923
USA
edsanford@ucdavis.edu
pointOfContact
Brian Gaylord
University of California - Davis: Bodega Marine Laboratory
707-875-1940
Bodega Marine Laboratory & Department of Evolution and Ecology 2099 Westshore Road, P.O. Box 247
Bodega Bay
CA
94923
USA
bpgaylord@ucdavis.edu
pointOfContact
Tessa M. Hill
University of California - Davis: Bodega Marine Laboratory
P.O. Box 247 2099 Westshore Road
Bodega Bay
CA
94923
USA
tmhill@ucdavis.edu
pointOfContact
asNeeded
Dataset Version: 2015-03-26
Unknown
lab
lat
lon
pCO2_target
temp_target
pH
alkalinity
OM_ar
pCO2
handheld fluorometer
temperature controlled water bath
compound microscope
potentiometric pH/temperature meter
Automatic titrator
theme
None, User defined
laboratory
latitude
longitude
Partial pressure of CO2
water temperature at measurement depth
pH
total alkalinity (TA)
Aragonite Saturation State
featureType
BCO-DMO Standard Parameters
Fluorometer
In-situ incubator
Microscope - Optical
Multi Parameter Bench Meter
Titrator
instrument
BCO-DMO Standard Instruments
BML_Sanford_2013
service
Deployment Activity
Bodega Marine Lab
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
Partnership for Interdisciplinary Studies of Coastal Oceans
http://www.piscoweb.org/
Partnership for Interdisciplinary Studies of Coastal Oceans
The Partnership for Interdisciplinary Studies of Coastal Oceans is a long-term ecosystem research and monitoring program established with the goals of:
understanding dynamics of the coastal ocean ecosystem along the U.S. west coast
sharing that knowledge so ocean managers and policy makers can make science based decisions regarding coastal and marine stewardship
producing a new generation of scientists trained in interdisciplinary collaborative approaches
Over the last 10 years, PISCO has successfully built a unique research program that combines complementary disciplines to answer critical environmental questions and inform management and policy. Activities are conducted at the latitudinal scale of the California Current Large Marine Ecosystem along the west coast of North America, but anchored around the dynamics of coastal, hardbottom habitats and the oceanography of the nearshore ocean – among the most productive and diverse components of this ecosystem. The program integrates studies of changes in the ocean environment through ecological monitoring and experiments. Scientists examine the causes and consequences of ecosystem changes over spatial scales that are the most relevant to marine species and management, but largely unstudied elsewhere.
Findings are linked to solutions through a growing portfolio of tools for policy and management decisions. The time from scientific discovery to policy change is greatly reduced by coordinated, efficient links between scientists and key decision makers.
Core elements of PISCO are:
Interdisciplinary ecosystem science
Data archiving and sharing
Outreach to public and decision-making user groups
Interdisciplinary training
Coordination of distributed research team
Established in 1999 with funding from The David and Lucile Packard Foundation, PISCO is led by scientists from core campuses Oregon State University (OSU); Stanford University’s Hopkins Marine Station; University of California, Santa Cruz (UCSC); and University of California, Santa Barbara (UCSB). Collaborators from other institutions also contribute to leadership and development of PISCO programs. As of 2005, core PISCO activities are funded by collaborative grants from The David and Lucile Packard Foundation and the Gordon and Betty Moore Foundation. Core support, along with additional funding from diverse public and private sources, make this unique partnership possible.
PISCO
largerWorkCitation
program
OCEAN ACIDIFICATION - Category 1: COLLABORATIVE RESEARCH: Acclimation and adaptation to ocean acidification of key ecosystem components in the California Current System
http://omegas.science.oregonstate.edu
OCEAN ACIDIFICATION - Category 1: COLLABORATIVE RESEARCH: Acclimation and adaptation to ocean acidification of key ecosystem components in the California Current System
<p>In 2010-2012/13, the OMEGAS consortium is investigating the impact of ocean acidification (OA) on two ecologically important, calcification-dependent marine invertebrates (sea urchins <em>Strongylocentrotus purpuratus</em> and mussels <em>Mytilus californianus</em>) in relation to local-to-coastal variation in carbonate chemistry in the California Current Large Marine Ecosystem (CCLME). An interdisciplinary team of investigators with expertise in physical and chemical oceanography, marine ecology, biochemistry, molecular physiology, and molecular genetics carry out integrated, lab and field, multi-site investigations of the ecological, physiological, and evolutionary responses of sea urchins and mussels to spatial and temporal variation in OA.</p>
<p>The research takes place in the context of a mosaic of variable oceanography, including recently documented latitudinal variation in carbonate chemistry along the upwelling-dominated US west coast. Variation in upwelling regimes from Washington to southern California generates spatial and temporal gradients in concentration of CO2 that shoal to surface waters during upwelling events, extending shoreward into the inner shelf region. Because calcifiers in the upwelling-dominated CCLME probably have historically experienced wide fluctuation in pH, many likely are adapted to a variable carbonate chemistry environment. The new challenge to these organisms is that they may have limited ability to respond to additional increases in CO2. It is this challenge, the mechanistic ability of calcifying invertebrates to acclimate or adapt to increasing CO2 and aragonite saturation states < 1.0, that is addressed in this program.</p>
<p>Our research includes several integrated elements that span our three project areas (Moorings and sensors; Genomics, physiology, and larval rearing; and Field transplants and growth experiments):</p>
<p>(1) Document the oceanographic context in which the study organisms operate in four regions of the CCLME with contrasting upwelling regimes.</p>
<p>(2) Examine physiological, genomic, and genetic mechanisms underlying acclimatization and adaptation to OA conditions with coordinated and integrated studies of adults and larvae of sea urchins and mussels collected from each of two sites within each of the four regions. In common-garden experiments culture sea urchins and mussels, respectively, under different CO2 and temperature regimes, and use genomics techniques to determine the tolerance of larvae to present and future OA conditions. </p>
<p>(3) Determine evolutionary responses and adaptational potential to OA using genetic surveys of urchins and mussels across the 8 sites and relate detected variability to the oceanographic conditions.</p>
<p>(4) Examine ecological responses to OA with transplants of mussels and urchins in the field and monitor growth rates and shell accretion rates in relation to oceanographic and physical conditions.</p>
<p>The team will investigate the impact of ocean acidification (OA) on two ecological important, calcification-dependent marine invertebrates (sea urchins <em>Strongylocentrotus purpuratus</em> and mussels <em>Mytilus californianus</em>) in relation to local-to-coastal variation in carbonate chemistry in the California Current Large Marine Ecosystem (CCLME). An interdisciplinary team of investigators with expertise in physical and chemical oceanography, marine ecology, biochemistry, molecular physiology, and molecular genetics will carry out an integrated, lab and field, multi-site investigation of the ecological, physiological, and evolutionary responses of sea urchins and mussels to spatial and temporal variation in OA. The research will take place in the context of a mosaic of variable oceanography, including recently documented latitudinal variation in carbonate chemistry along the upwelling-dominated US west coast. Variation in upwelling regimes from Washington to southern California generates spatial and temporal gradients in concentration of CO2 that shoal to surface waters during upwelling events, extending shoreward into the inner shelf region. Because calcifiers in the upwelling-dominated CCLME probably have historically experienced wide fluctuation in pH, many likely are adapted to a variable carbonate chemistry environment. The new challenge to these organisms is that they may have limited ability to respond to additional increases in CO2. It is this challenge, the mechanistic ability of calcifying invertebrates to acclimate or adapt to increasing CO2 and decreasing carbonate mineral saturation state, that is addressed in this project.</p>
<p>The OMEGAS Moorings and Sensors team will document the oceanographic context in which the study organisms operate in four regions of the CCLME with contrasting upwelling regimesThis project also coordinates closely with other OMEGAS projects [(i) Genetics, physiology, larval rearing and (ii) Field transplants] to achieve goals of the project to determine acclimatization and adaptational capacity to present and future OA conditions .</p>
<p><strong>PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH</strong></p>
<p>Gaylord, B., T. M. Hill, E. Sanford, E. A. Lenz, L. A. Jacobs, K. N. Sato, A. D. Russell, and A. Hettinger. "Functional impacts of ocean acidification in an ecologically critical foundation species", <em>Journal of Experimental Biology</em>, v.214, 2011, p. 2586.</p>
<p>Howarth, R., F. Chan, D. J. Conley, S. C. Doney, R. Marino, and G. Billen. "Coupled biogeochemical cycles: eutrophication and hypoxia in temperate estuaries and coastal marine ecosystems", <em>Frontiers in Ecology and the Environment</em>, v.9, 2011, p. 18.</p>
<p>Yu, P. D., P. G. Matson, T. R. Martz, and G. E. Hofmann. "The ocean acidification seascape and its relationship to theperformance of calcifying marine invertebrates: laboratory experiments on the development of urchin larvae framed by environmentally-relevant pCO2/pH", <em>Journal of Experimental Marine Biology and Ecology</em>, v.400, 2011, p. 288.</p>
OMEGAS-MaS
largerWorkCitation
project
eng; USA
biota
oceans
Bodega Marine Lab
2015-03-26
California Current Large Marine Ecosystem, Oregon, California
0
BCO-DMO catalogue of parameters from Experimental results on the carbonate chemistry of mussel growth from the Bodega Marine Laboratory in 2013 (OMEGAS-MaS project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/554595.rdf
Name: lab
Units: unitless
Description: <p>deployment id</p>
http://lod.bco-dmo.org/id/dataset-parameter/554596.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/554597.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/554598.rdf
Name: pCO2_target
Units: uatm
Description: <p>target pCO2 treatment level</p>
http://lod.bco-dmo.org/id/dataset-parameter/554599.rdf
Name: temp_target
Units: degrees Celsius
Description: <p>temperature treatment level</p>
http://lod.bco-dmo.org/id/dataset-parameter/554600.rdf
Name: pH
Units: total pH scale
Description: <p>pH measured on benchtop pH meter (with a glass electrode)</p>
http://lod.bco-dmo.org/id/dataset-parameter/554601.rdf
Name: alkalinity
Units: umol/kgSW
Description: <p>total alkalinity measured on Metrohm auto-titrator</p>
http://lod.bco-dmo.org/id/dataset-parameter/554602.rdf
Name: OM_ar
Units: unitless
Description: <p>mean aragonite saturation state calculated from pH and alkalinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/554603.rdf
Name: pCO2
Units: uatm
Description: <p>mean pCO2 calculated from pH and alkalinity</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
3215
https://datadocs.bco-dmo.org/file/R88XyZWURVVyLo/mussel_carbchem.csv
mussel_carbchem.csv
Primary data file for dataset ID 554572
download
https://osprey.bco-dmo.org/dataset/554572/data/download
download
onLine
dataset
<p>See related reference for <a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100353" target="_blank">methodology</a>.</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing:</strong></p>
<p>- added conventional header with dataset name, PI name, version date, publication reference<br />
- renamed parameters to BCO-DMO standard<br />
- added lab, lat, lon&nbsp;for mapping access</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
handheld fluorometer
handheld fluorometer
PI Supplied Instrument Name: handheld fluorometer PI Supplied Instrument Description:Aqualflor 8000-010, Turner Designs Instrument Name: Fluorometer Instrument Short Name:Fluorometer Instrument Description: A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/113/
temperature controlled water bath
temperature controlled water bath
PI Supplied Instrument Name: temperature controlled water bath Instrument Name: In-situ incubator Instrument Short Name:in-situ incubator Instrument Description: A device on a ship or in the laboratory that holds water samples under controlled conditions of temperature and possibly illumination. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/82/
compound microscope
compound microscope
PI Supplied Instrument Name: compound microscope PI Supplied Instrument Description:Leica M125 with DC290 camera Instrument Name: Microscope - Optical Instrument Short Name: Instrument Description: Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope". Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB05/
potentiometric pH/temperature meter
potentiometric pH/temperature meter
PI Supplied Instrument Name: potentiometric pH/temperature meter PI Supplied Instrument Description:Accumet Excel XL60: measures pH/mV/Temperature/DO/ISE/Conductivity
Salinity was measured with a multiparameter probe (YSI Professional Plus). Instrument Name: Multi Parameter Bench Meter Instrument Short Name:Multi Parameter Bench Meter Instrument Description: An analytical instrument that can measure multiple parameters, such as pH, EC, TDS, DO and Temperature with one device.
Automatic titrator
Automatic titrator
PI Supplied Instrument Name: Automatic titrator PI Supplied Instrument Description:automated Gran titration (Metrohm 809) Instrument Name: Titrator Instrument Short Name:Titrator Instrument Description: Titrators are instruments that incrementally add quantified aliquots of a reagent to a sample until the end-point of a chemical reaction is reached. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB12/
Deployment: BML_Sanford_2013
BML_Sanford_2013
lab Bodega Marine Laboratory
laboratory
BML_Sanford_2013
Eric Sanford
University of California - Davis: Bodega Marine Laboratory
lab Bodega Marine Laboratory
laboratory