19:I[42426,["/_next/static/immutable/chunks/1xctgzqre-wsy.js","/_next/static/immutable/chunks/06_-wz6pdtp2b.js","/_next/static/immutable/chunks/30e52g49hg40p.js","/_next/static/immutable/chunks/02yq6tul2z-oh.js","/_next/static/immutable/chunks/10bx_ec2vj7n_.js","/_next/static/immutable/chunks/33bfn03fo8xnt.js","/_next/static/immutable/chunks/0tfjf78scu61b.js","/_next/static/immutable/chunks/31xnvej4n1bi9.js"],"default"] 1a:T6e0,

This is from the cruise report (see LGM1110 deployment page for link) and particulary pertains to the Fluorescence data that were collected:

"Preliminary CTD Results: A total of 20 CTD stations were occupied and sampled during the cruise. Hydrographic data were collected in all sampling regions of the study. Casts were sent to the shallower of 1,000 m or 5-10 m above the bottom. The primary fluorometer was mis-calibrated (had the wrong scale factor in the calibration/processing file), so fluorescence data from the first four (or five) stations (Stns #22, #7, #8, #11) had to be re-processed with the correct scaling factor. Examination of the *.cnv file showed which casts had the miscalibrated data, as the max reading for fluorescence was ~ 0.05 mg/m3. For nearly every other station, maximum fluorescence readings were > 1.0 mg/m3. A secondary fluorometer was added to the CTD rosette between Stns #11 and #12, which verified that the issue was with the scale factor in the CTD processing software."

The data that are served have warnings about fluorescence numbers in the headers of the casts at Stations 22, 7, 8 and 11.

Variables that were part of the data that have been rendered invisible from the data online are: Elapsed time in seconds, modulo error count (always zero), and nbin (number of scans per bin). Those numbers are available upon request.

IEDA has published a DOI for another version of this dataset: 'Bucklin, A., (2015). 'Calibrated Hydrographic Data from Drake Passage acquired with a CTD during the Laurence M. Gould expedition LMG1110 (2011). doi: 10.1594/IEDA/318146.

1b:Ta12,The Antarctic salp, Salpa thompsoni, is an increasingly important player in the vulnerable Antarctic Peninsula pelagic ecosystem. Observations of high abundance of Salpa thompsoni during the summer in the Southern Ocean suggest that this species is capable of rapid somatic and population growth, and frequently forms dense blooms under favorable environmental conditions. The proposed research will examine genome-wide patterns of gene expression, target gene expression levels, and patterns of population genetic diversity and structure of the target salp species. Our preliminary results and data analysis have provided a promising basis for transcriptomic studies of S. thompsoni in the Southern Ocean. The proposed next steps in our genomic/transcriptomic analysis of Salpa thompsoni are: 1) completion of a reference transcriptome as a basis for genome-wide analysis of gene expression; 2) whole transcriptome shotgun sequencing (RNA-Seq) analysis to characterize gene expression in relation to individual characteristics and environmental conditions; 3) quantitative real-time PCR (qRT-PCR) characterization and validation of gene expression for 10-20 top differentially-expressed genes; and 4) detection of strand-specific allelic variation at SNP (Single Nucleotide Polymorphic) sites to analyze clonal diversity and population genetic diversity and structure. We hypothesize that: 1) deep analysis of the Salpa thompsoni transcriptome will reveal significant associations among selected set of differentially-expressed genes and critical life history stages and events (e.g., ontogenetic maturation, sexual reproduction, senescence) of the salp; and 2) the species will show variable levels of clonal diversity and significant genetic differentiation among salp populations in different regions of the Southern Ocean. Samples will be obtained from research cruises during 2011-2013 in diverse regions of the Southern Ocean; dedicated sample and data collection will be carried out during a cruise of the R/V LM GOULD (LMG11-10) to the Western Antarctic Peninsula region in November, 2011. The significance of this effort lies in new understanding of the molecular processes underlying the complex life history and population dynamics of S. thompsoni in relation to the Antarctic pelagic ecosystem and extreme and variable environmental conditions of the Southern Ocean. Most of the data from this project are available from the Marine Geoscience Data System (MGDS), part of IEDA and is available at http://www.marine-geo.org/tools/search/Files.php?data_set_uid=18148.6:["$","$L19",null,{"dataset":{"_id":"559174","description":"$1a","problem":"","acquisition":"","processing":"","bcodmoProcessing":"","title":"CTD data from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from November to December 2011 (Salp_Antarctic project)","nickname":"CTD data from LMG1110","dataUrl":"","currentState":"Final no updates expected","currentStateId":"7","validated":true,"restricted":false,"version":"final","version_date":"2015-05-26T04:00:00.000Z","abstract":"","citation":"Bucklin, A., Warren, J. (2015) CTD data from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from November to December 2011 (Salp_Antarctic project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version final) Version Date 2015-05-26 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.661344 [access date]","citationParts":{"identifier":"doi:10.1575/1912/bco-dmo.661344","versionDate":"2015-05-26","versionId":"final","year":"2015","title":"CTD data from ARSV Laurence M. 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Warren"},"performedAtOrganization":{"_id":"54","name":"Stony Brook University - SoMAS"}},{"role":{"_id":"145","name":"BCO-DMO Data Manager"},"performedBy":{"_id":"50382","name":"Ms Dicky Allison"},"performedAtOrganization":{"_id":"191","name":"Woods Hole Oceanographic Institution"}}],"deployments":[{"_id":"58728","name":"LMG1110","synonyms":[],"dates":{"start":"2011-11-02T00:00:00.000Z","end":"2011-12-01T00:00:00.000Z"},"platform":{"_id":"54020","name":"ARSV Laurence M. Gould"},"chiefScientists":[{"id":"50389","name":"Ann Bucklin","role":"Chief Scientist"}]}],"funding":[{"_id":"54892","name":"ANT-1044982","fundingSource":{"_id":"369","name":"NSF Antarctic Sciences"},"url":"https://www.nsf.gov/awardsearch/show-award?AWD_ID=1044982"}],"instruments":[{"_id":"559326","name":"CTD","description":"The Sea-Bird 911+ offers real-time operation via sea cable telemetry, includes a solid state\nmemory module, and has a maximum depth of 6800 m. The CTD is mounted on a 24-bottle\nGeneral Oceanics rosette. \n ","type_id":"591","type_name":"CTD Sea-Bird SBE 911plus","type_desc":"The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics","type_acronym":"CTD SBE 911plus"},{"_id":"559329","name":"Dissolved Oxygen sensors","description":"Calibration sheet for primary Dissolved oxygen sensor with model and serial numbers.\nCalibration sheet for secondary Dissolved oxygen sensor with model and serial numbers. (This calibration sheet is not well reproduced.)","type_id":"552","type_name":"Sea-Bird SBE 43 Dissolved Oxygen Sensor","type_desc":"The Sea-Bird SBE 43 dissolved oxygen sensor is a redesign of the Clark polarographic membrane type of dissolved oxygen sensors. More information from the manufacturer: https://www.seabird.com/products/sbe-43-dissolved-oxygen-sensor","type_acronym":"SBE-43 DO"},{"_id":"559327","name":"Primary Temperature Sensor","description":"Calibration Page of the primary sensor with model and serial numbers.\nCalibration Page of the secondary sensor with model and serial numbers.","type_id":"473","type_name":"Sea-Bird SBE-3 Temperature Sensor","type_desc":"The SBE-3 is a slow response, frequency output temperature sensor manufactured by Sea-Bird Electronics, Inc. (Bellevue, Washington, USA). It has an initial accuracy of +/- 0.001 degrees Celsius with a stability of +/- 0.002 degrees Celsius per year and measures seawater temperature in the range of -5.0 to +35 degrees Celsius. More information from Sea-Bird Electronics: https://www.seabird.com/products/sbe-3-oceanographic-temperature-sensor","type_acronym":"SBE-3 Temperature"},{"_id":"559328","name":"Conductivity sensors","description":"Calibration sheet for primary conductivity sensor with model and serial numbers.\nCalibration sheet for secondary conductivity sensor with model and serial numbers.","type_id":"474","type_name":"Sea-Bird SBE-4 Conductivity Sensor","type_desc":"The Sea-Bird SBE-4 conductivity sensor is a modular, self-contained instrument that measures conductivity from 0 to 7 Siemens/meter. The sensors (Version 2; S/N 2000 and higher) have electrically isolated power circuits and optically coupled outputs to eliminate any possibility of noise and corrosion caused by ground loops. The sensing element is a cylindrical, flow-through, borosilicate glass cell with three internal platinum electrodes. Because the outer electrodes are connected together, electric fields are confined inside the cell, making the measured resistance (and instrument calibration) independent of calibration bath size or proximity to protective cages or other objects.","type_acronym":"SBE-4 Conductivity"},{"_id":"559330","name":"Fluorometer","description":"Calibration page for first fluorometer.\n\"The primary fluorometer was mis-calibrated (had the wrong scale factor in the calibration/processing file), so fluorescence data from the first four (or five) stations (Stns #22, #7, #8, #11) had to be re-processed with the correct scaling factor. Examination of the *.cnv file showed which casts had the miscalibrated data, as the max reading for fluorescence was ~ 0.05 mg/m3. For nearly every other station, maximum fluorescence readings were > 1.0 mg/m3. A secondary fluorometer was added to the CTD rosette between Stns #11 and #12, which verified that the issue was with the scale factor in the CTD processing software.\" (from Cruise Report)\nThe Default Scale Factor in the Calibration sheet, 25, is the correct scale factor and was not the one used for the first four CTDs. (2,3,5,6 from stations 22,7,8,and 11, respectively) The fluorescence in those casts should not be used until corrected.\n ","type_id":"592","type_name":"Wet Labs ECO-AFL/FL Fluorometer","type_desc":"The Environmental Characterization Optics (ECO) series of single channel fluorometers delivers both high resolution and wide ranges across the entire line of parameters using 14 bit digital processing. The ECO series excels in biological monitoring and dye trace studies. The potted optics block results in long term stability of the instrument and the optional anti-biofouling technology delivers truly long term field measurements.\r\n more information from Wet Labs","type_acronym":"ECO AFL/FL"}],"parameters":[{"_id":"559273","name":"station_std","format":"","frictionlessType":"","description":"

standard station numbers (as opposed to consecutive station numbers)

","units":{"_id":"","name":"number"},"type":{"_id":"989","name":"station_std","description":"

standard broad-scale station number

"}},{"_id":"559274","name":"cast","format":"","frictionlessType":"","description":"

CTD cast number

","units":{"_id":"","name":"number"},"type":{"_id":"761","name":"cast","description":"

cast or profile number

"}},{"_id":"559275","name":"lat_start","format":"","frictionlessType":"","description":"

latitude at the start of the cast

","units":{"_id":"","name":"decimal degrees; negative = South of Equator"},"type":{"_id":"870","name":"lat_start","description":"

latitude at start time of measurement; in decimal degrees (negative denotes South)

"}},{"_id":"559276","name":"lon_start","format":"","frictionlessType":"","description":"

longitude at the start of the cast

","units":{"_id":"","name":"decimal degrees; negative = West of Greenwich"},"type":{"_id":"883","name":"lon_start","description":"

longitude at starting time of measurement (west is negative), in decimal degrees

"}},{"_id":"559277","name":"day_gmt","format":"","frictionlessType":"","description":"

day of the month in Greenwich Mean Time (a.k.a.UTC)

","units":{"_id":"","name":"two digit day"},"type":{"_id":"800","name":"day_gmt","description":"

day, GMT time e.g. 22.

"}},{"_id":"559278","name":"month_gmt","format":"","frictionlessType":"","description":"

month of the year in Greenwich Mean Time (a.k.a.UTC)

","units":{"_id":"","name":"two digit month"},"type":{"_id":"894","name":"month_gmt","description":"

month of year, GMT time , i.e. 01-12

"}},{"_id":"559279","name":"year","format":"","frictionlessType":"","description":"

year

","units":{"_id":"","name":"four digit year"},"type":{"_id":"1062","name":"year","description":"

year, reported as YYYY, e.g. 1995

"}},{"_id":"559280","name":"time_start_gmt","format":"","frictionlessType":"","description":"

time at the start of the cast: "NMEA UTC (Time)"

","units":{"_id":"","name":"HH:MM:SS"},"type":{"_id":"1009","name":"time_start","description":"

starting time of observation, GMT time, 24 hour clock

"}},{"_id":"559281","name":"ISO_DateTime_UTC","format":"","frictionlessType":"","description":"

ISO 8601 standard date and time

","units":{"_id":"","name":"ISO format"},"type":{"_id":"1908","name":"ISO_DateTime_UTC","description":"

Date/Time (UTC) ISO formatted
\nThis standard is based on ISO 8601:2004(E) and takes on any of the following forms:
\n2009-08-30T09:05:00[.xx] (local time)
\n2009-08-30T14:05:00[.xx]Z (UTC time)
\n2009-08-30T14:05:00[.xx]-05:00
\nThe dashes and the colons can be dropped.
\nThe T can also be dropped \"by mutual agreement\", but one needs the trailing Z if the time is UTC.

Sample ISO_datetime_utc:
\n2009-08-30T14:05:00[.xx]Z (UTC time)

Format: YYYY-mm-ddTHH:MM:SS[.xx]Z (UTC time)

"}},{"_id":"559282","name":"press","format":"","frictionlessType":"","description":"

water pressure at the point of data collection; can be considered depth within certain conditions

","units":{"_id":"","name":"decibars"},"type":{"_id":"732","name":"pressure","description":"

water pressure at measurement; depth reported as pressure; positive number increasing with water depth

"}},{"_id":"559283","name":"depth_w","format":"","frictionlessType":"","description":"

water depth at the data collection point

","units":{"_id":"","name":"meters"},"type":{"_id":"818","name":"depth_w","description":"

water depth, in meters

"}},{"_id":"559284","name":"temp","format":"","frictionlessType":"","description":"

water temperature [ITS-90] from primary sensor

","units":{"_id":"","name":"degrees C"},"type":{"_id":"733","name":"temperature","description":"

water temperature at measurement depth

"}},{"_id":"559285","name":"temp_2","format":"","frictionlessType":"","description":"

water temperature [ITS-90] from secondary sensor

","units":{"_id":"","name":"degrees C"},"type":{"_id":"733","name":"temperature","description":"

water temperature at measurement depth

"}},{"_id":"559286","name":"temp_diff","format":"","frictionlessType":"","description":"

temperature difference; secondary sensor - primary sensor

","units":{"_id":"","name":"degrees C"},"type":{"_id":"733","name":"temperature","description":"

water temperature at measurement depth

"}},{"_id":"559287","name":"cond","format":"","frictionlessType":"","description":"

conductivity from primary sensor

","units":{"_id":"","name":"milliSiemens per centimeter [mS/cm]"},"type":{"_id":"781","name":"conductivity mS","description":"

conductivity, measured by primary sensor in milliSiemens/centimeter. Conductivity sensor is often part of a CTD instrument package. Depending on input source may have a variety of supplied names.

"}},{"_id":"559288","name":"cond_2","format":"","frictionlessType":"","description":"

conductivity from secondary sensor

","units":{"_id":"","name":"milliSiemens per centimeter [mS/cm]"},"type":{"_id":"781","name":"conductivity mS","description":"

conductivity, measured by primary sensor in milliSiemens/centimeter. Conductivity sensor is often part of a CTD instrument package. Depending on input source may have a variety of supplied names.

"}},{"_id":"559289","name":"O2_um_Kg","format":"","frictionlessType":"","description":"

dissolved oxygen from primary CTD sensor

","units":{"_id":"","name":"micromoles per Kilogram"},"type":{"_id":"1200","name":"O2_umol_kg","description":"

Oxygen; dissolved; reported in units of micromoles/kilogram

"}},{"_id":"559290","name":"O2_ml_L","format":"","frictionlessType":"","description":"

dissolved oxygen from primary CTD sensor

","units":{"_id":"","name":"milliliters per Liter"},"type":{"_id":"1198","name":"O2_ml_L","description":"

Oxygen; dissolved; reported in units of milliliters/liter

"}},{"_id":"559291","name":"O2_um_Kg_2","format":"","frictionlessType":"","description":"

dissolved oxygen from secondary CTD sensor

","units":{"_id":"","name":"micromoles per Kilogram"},"type":{"_id":"1200","name":"O2_umol_kg","description":"

Oxygen; dissolved; reported in units of micromoles/kilogram

"}},{"_id":"559292","name":"O2_ml_L_2","format":"","frictionlessType":"","description":"

dissolved oxygen from secondary CTD sensor

","units":{"_id":"","name":"milliliters per Liter"},"type":{"_id":"1198","name":"O2_ml_L","description":"

Oxygen; dissolved; reported in units of milliliters/liter

"}},{"_id":"559293","name":"fluor","format":"","frictionlessType":"","description":"

fluorescence

","units":{"_id":"","name":"milligrams per cubic meter"},"type":{"_id":"835","name":"fluorescence","description":"

Fluorescence. Indirect measure of pigment concentration.

Units and collection method may vary. Units often reported in milligrams/meter^3 (mg/m3) or micromoles per liter (ug/L). Sometimes reported after being calibrated against extracted pigment concentrations.

In JGOFS/GLOBEC projects fluorescence is measured from CTD instrument sensor.

"}},{"_id":"559294","name":"lat","format":"","frictionlessType":"","description":"

latitude

","units":{"_id":"","name":"decimal degrees; negative = South"},"type":{"_id":"730","name":"latitude","description":"

latitude, in decimal degrees, North is positive, negative denotes South; Reported in some datasets as degrees, minutes

"}},{"_id":"559295","name":"lon","format":"","frictionlessType":"","description":"

longitude

","units":{"_id":"","name":"decimal degrees; negative = West"},"type":{"_id":"731","name":"longitude","description":"

longitude, in decimal degrees, East is positive, negative denotes West; Reported in some datasets as degrees, minutes

"}},{"_id":"559296","name":"sal_diff","format":"","frictionlessType":"","description":"

practical salinity difference; secondary sensor - primary sensor

","units":{"_id":"","name":"PSU"},"type":{"_id":"1841","name":"Salinity_difference","description":"

For Seabird 911 CTDs, salinity difference derived from Secondary Temperature/Conductivity sensor pair minus Primary Temperature/Conductivity sensor.

"}},{"_id":"559297","name":"cond_diff","format":"","frictionlessType":"","description":"

conductivity difference; secondary sensor - primary sensor

","units":{"_id":"","name":"milliSiemens per centimeter [mS/cm]"},"type":{"_id":"781","name":"conductivity mS","description":"

conductivity, measured by primary sensor in milliSiemens/centimeter. Conductivity sensor is often part of a CTD instrument package. Depending on input source may have a variety of supplied names.

"}},{"_id":"559298","name":"sigma_t","format":"","frictionlessType":"","description":"

water density from primary sensors

","units":{"_id":"","name":"kilograms per cubic meter - 1000"},"type":{"_id":"734","name":"sigma-t","description":"

Sigma-t density, often reported in kg/m^3 - 1000. 'Sigma-t' is density minus 1000 (without the effect of pressure). It is normally calculated from observations of temperature and salinity. (See How do we measure the density of sea water?)

"}},{"_id":"559299","name":"density_2","format":"","frictionlessType":"","description":"

water density from secondary sensors

","units":{"_id":"","name":"kilograms per cubic meter"},"type":{"_id":"806","name":"density","description":"

density, in mass per unit volume

"}},{"_id":"559300","name":"potemp","format":"","frictionlessType":"","description":"

Potential Temperature [ITS-90] from primary sensors

","units":{"_id":"","name":"degrees C"},"type":{"_id":"936","name":"potemp","description":"

potential temperature (International Practical Temperature Scale - 68 ,or 90). When known, the scale will be reported in the units field of the documentation file.

"}},{"_id":"559301","name":"potemp_2","format":"","frictionlessType":"","description":"

Potential Temperature [ITS-90] from secondary sensors

","units":{"_id":"","name":"degrees C"},"type":{"_id":"1843","name":"potential temperature 2","description":"

potential temperature (International Practical Temperature Scale - 68 ,or 90) from secondary sensor. When known, the scale will be reported in the units field of the documentation file.

"}},{"_id":"559302","name":"sound_vel","format":"","frictionlessType":"","description":"

sound velocity [using Chen-Millero equation]

","units":{"_id":"","name":"meters per second"},"type":{"_id":"975","name":"sound_vel","description":"

sound velocity in sea water, in meters/second

"}},{"_id":"559303","name":"sal","format":"","frictionlessType":"","description":"

salinity from primary sensor

","units":{"_id":"","name":"practical salinity units (PSU)"},"type":{"_id":"955","name":"sal","description":"

Salinity: The amount (mass or quantity of matter) of salt per amount (volume or mass) of a body of water.

"}},{"_id":"559304","name":"sal_2","format":"","frictionlessType":"","description":"

salinity from secondary sensor

","units":{"_id":"","name":"practical salinity units (PSU)"},"type":{"_id":"957","name":"sal2","description":"

salinity, calculated from the CTD 'secondary sensors' of conductivity and temperature, Practical Salinity Scale, dimensionless. Depending on the input source, salinity from the secondary sensors can have a variety of names including s1, s2, s11, s22, sal1, sal2, sal22, sal_S.

"}}],"related_publications":[],"related_datasets":[],"services":[{"grouping":"","items":[{"name":"View Data","description":"An in-browser view of the primary tabular data file","url":"https://www.bco-dmo.org/dataset/559174/data/view","contentType":"text/html","actionType":"view"}]},{"grouping":"Metadata","items":[{"name":"HTML","description":"A simple HTML page of the dataset metadata","url":"https://www.bco-dmo.org/dataset/559174/description","contentType":"text/html","actionType":"view"},{"name":"PDF","description":"A PDF of the HTML dataset metadata","url":"https://www.bco-dmo.org/dataset/559174/Dataset_description.pdf","contentType":"application/pdf","actionType":"download"},{"name":"ISO 19115-2 (NOAA Profile)","description":"","url":"https://www.bco-dmo.org/dataset/559174/iso","contentType":"application/xml","actionType":"download"}]}],"programs":[],"projects":[{"_id":"2174","name":"Population ecology of Salpa thompsoni based on molecular indicators","acronym":"Salp_Antarctic","description":"$1b"}],"archives":[{"id_value":"","url":"","date_assigned":"2016-11-13","version_date":"2015-05-26","archiver":"Data Observation Network for Earth (DataONE)","archiver_id":"641382"},{"id_value":"10.1575/1912/bco-dmo.661344","url":"https://doi.org/10.1575/1912/bco-dmo.661344","date_assigned":"2016-10-10","version_date":"2015-05-26","archiver":"Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)","archiver_id":"272"}],"license":{"name":"Creative Commons Attribution 4.0","id":"CC-BY-4.0","uri":"https://creativecommons.org/licenses/by/4.0/","spdxUri":"https://spdx.org/licenses/CC-BY-4.0"},"metrics":{"views":{"count":377},"downloads":{"count":877}}}}]