http://lod.bco-dmo.org/id/dataset/559181
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-05-19
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Amino acid compound-specific isotope analysis (AA-CSIA) from tissue samples from pelagic fish from R/V Kilo Moana cruise KM1123 in the north and west of the island of O'ahu in 2011
2015-05-19
publication
2015-05-19
revision
BCO-DMO Linked Data URI
2015-05-19
creation
http://lod.bco-dmo.org/id/dataset/559181
Brian N. Popp
University of Hawaiʻi at Mānoa
principalInvestigator
Jeffrey C. Drazen
University of Hawaiʻi at Mānoa
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Popp, B. N., Drazen, J. C. (2015) Amino acid compound-specific isotope analysis (AA-CSIA) from tissue samples from pelagic fish from R/V Kilo Moana cruise KM1123 in the north and west of the island of O'ahu in 2011. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 19 May 2015) Version Date 2015-05-19 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/559181 [access date]
Amino acid compound-specific isotope analysis (AA-CSIA) from tissue samples from pelagic fish. Dataset Description: <p>Amino acid compound-specific isotope analysis (AA-CSIA) from tissue samples from pelagic fish collected&nbsp;at two sites in offshore waters to the north and west of the island of O'ahu, Hawaii.</p>
<p><strong>Related Publications:</strong><br />
Choy C. A., Popp B. N., Hannides C. C. S. and Drazen J. C. (2015) Trophic structure and food resources of epipelagic and mesopelagic fishes in the North Pacific Subtropical Gyre ecosystem inferred from nitrogen isotopic compositions. Limnology and Oceanography doi:<a href="http://dx.doi.org/10.1002/lno.10085" target="_blank">10.1002/lno.10085</a>. (<a href="http://dmoserv3.whoi.edu/data_docs/CAMEO_Trophic_Position/Choy_et_al_2015_Trophic_epipelagic_and_mesopelagic_fishes.pdf">PDF</a>)</p> Methods and Sampling: <p>The majority of micronekton fish samples were collected in August 2011 using R/V Kilo Moana (KM1123) at two sites in offshore waters to the north and west of the island of O'ahu in the NPSG. Station ALOHA is the Hawaii Ocean Time-series site located north of O'ahu (22.45 N, 158 W) and Station KAHE is an offshore site located west of O'ahu at (~21.3 N, 158.3 W).</p>
<p>Large pelagic fish tissue samples were collected at sea by trained longline fishery observers of the National Oceanic and Atmospheric Administration’s (NOAA) Pacific Islands Regional Observer Program during the years 2009-2011. Approximate catch locations were reported in accordance with NOAA’s Fisheries Operations Data Confidentiality Policy (see Figure 1 of Choy et al. 2015).</p>
<p>Methods are described in Choy et al. (2015). Briefly:<br />
Outer layers of large pelagic fish tissue samples were removed with clean tools to avoid any potential sampling contamination. Only dorsal white muscle tissue of micronekton fish specimens was used for analysis. Bulk sample nitrogen (N) and carbon (C) isotope compositions of all fishes were determined using an isotope ratio mass spectrometer (IRMS; Delta PlusXP) coupled to an elemental analyzer (Conflo IV/Costech ECS 4010). Isotope values are reported in conventional delta-notation relative to the international standards atmospheric N2 and V-PDB, for N and C, respectively. A subset of large pelagic and micronekton fishes (60 of 222) was selected for&nbsp;amino acid (AA) compound-specific isotope analysis (AA-CSIA). The d15N values of individual AAs were measured using an IRMS (Delta PlusXP, Delta V Plus or MAT 253) interfaced with a gas chromatograph (Trace GC) through a GC-C III combustion furnace (980 degrees C), reduction furnace (650 degrees C), and liquid-N cold trap. All samples were analyzed in triplicate and the measured AA-d15N values were normalized to known d15N values of two coinjected internal reference compounds (norleucine [Nor] and aminoadipic acid [AAA] with d15N reference values of 19.06 o/oo and -5.8 o/oo, respectively).</p>
<p><strong>Related Publications:</strong><br />
Choy C. A., Popp B. N., Hannides C. C. S. and Drazen J. C. (2015) Trophic structure and food resources of epipelagic and mesopelagic fishes in the North Pacific Subtropical Gyre ecosystem inferred from nitrogen isotopic compositions. Limnology and Oceanography doi:<a href="http://dx.doi.org/10.1002/lno.10085" target="_blank">10.1002/lno.10085</a>. (<a href="http://dmoserv3.whoi.edu/data_docs/CAMEO_Trophic_Position/Choy_et_al_2015_Trophic_epipelagic_and_mesopelagic_fishes.pdf">PDF</a>)</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1041329 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1041329
Funding provided by Pelagic Fisheries Research Program (PFRP) Award Number: NA09OAR4320075
onGoing
Brian N. Popp
University of Hawaiʻi at Mānoa
808-956-6206
Department of Earth Sciences 1680 East-West Road
Honolulu
HI
96822
USA
popp@hawaii.edu
pointOfContact
Jeffrey C. Drazen
University of Hawaiʻi at Mānoa
808-956-6567
Department of Oceanography, SOEST 1000 Pope Road
Honolulu
HI
96822
USA
jdrazen@hawaii.edu
pointOfContact
asNeeded
Dataset Version: 19 May 2015
Unknown
species
sample
length
year
month
day
amino_acid
d15N_AA
stdev
gas chromatograph
isotope ratio mass spectrometer
Longline Fishing Gear
theme
None, User defined
species scientific name (binomial)
sample identification
length
year
month of year
day of month
No BCO-DMO term
d15N measured in biota
standard deviation
featureType
BCO-DMO Standard Parameters
Gas Analyzer
Isotope-ratio Mass Spectrometer
Longline Fishing Gear
instrument
BCO-DMO Standard Instruments
KM1123
service
Deployment Activity
north and west of the island of O'ahu
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Comparative Analysis of Marine Ecosystem Organization
http://www.nsf.gov/geo/oce/programs/CAMEO_Webpage.jsp
Comparative Analysis of Marine Ecosystem Organization
CAMEO Science Plan (2012).
The Comparative Analysis of Marine Ecosystem Organization (CAMEO) program was implemented as a partnership between the NOAA National Marine Fisheries Service and National Science Foundation Division of Ocean Sciences. The purpose of CAMEO was to strengthen the scientific basis for an ecosystem approach to the stewardship of our ocean and coastal living marine resources. The program supported fundamental research to understand complex dynamics controlling ecosystem structure, productivity, behavior, resilience, and population connectivity, as well as effects of climate variability and anthropogenic pressures on living marine resources and critical habitats. CAMEO encouraged the development of multiple approaches, such as ecosystem models and comparative analyses of managed and unmanaged areas (e.g., marine protected areas) that can ultimately form a basis for forecasting and decision support. Central to the program was the emphasis on collaborations between academic and private researchers and federal agency scientists with mission responsibilities to inform ecosystem management activities. (adapted from CAMEO website)
This funding opportunity implemented CAMEO research by supporting the development of research tools and strategic approaches through the following types of proposals:
1. Development of strategies and methodologies for comparative analyses that can be applied consistently across spatial and temporal scales and ecosystems, and that facilitate the design of decision support tools for marine populations, ecosystems and habitats.
2. Development of models that address key scientific questions by comparing ecosystems and ecosystem processes. Models that are geographically and temporally portable, and that incorporate assessment of modeling skill, are particularly encouraged.
3. Retrospective studies that analyze, re-analyze or synthesize existing information (historic, time-series, ongoing program, etc.) using a comparative approach.
4. Studies that integrate the human dimension within ecosystem dynamics. The CAMEO program seeks to promote interdisciplinary research using comparative approaches to link marine ecosystem research with the social and behavioral sciences in new and vital ways.
To guide program priorities, a Science Steering Committee was formed through Dr. Linda Deegan and the initial Scientific Planning Office at the Marine Biological Laboratory in Woods Hole, MA. This Committee was designed to provide scientific advice and broad direction to NOAA and NSF regarding the CAMEO program.
CAMEO
largerWorkCitation
program
CAMEO 2009 - A novel tool for validating trophic position estimates in ecosystem-based fisheries models
http://cameo.noaa.gov/pres_bpopp.html
CAMEO 2009 - A novel tool for validating trophic position estimates in ecosystem-based fisheries models
<p>(<em>From NSF Award Abstract</em>)</p>
<p>Evidence increasingly demonstrates that selective removal of marine life can induce restructuring of marine food webs. Trophic structure is the central component of mass balance models, widely used tools to evaluate fisheries in an ecosystem context. Food web structure is commonly determined by stomach contents or by bulk tissue stable isotope analyses, both of which are limited in terms of resolution and versatility. The investigators will refine a tool, Amino Acid Compound-Specific Isotopic Analyses (AA-CSIA), which can be broadly applicable for quantifying the time-integrated trophic position (TP) of consumers. Differences in source and trophic nitrogen isotopic composition for specific amino acids will provide an unambiguous and integrated measure of fractional trophic TP across multiple phyla, regardless of an animal's physiological condition or of the biogeochemical cycling at the base of the food web. AA-CSIA will allow testing of the efficacy of trophic position estimates derived from ecosystem-based models and promote the evolution of these models into decision-support tools.</p>
<p>This project has three goals: 1. To validate the application of AA-CSIA across multiple marine phyla under differing physiological conditions. 2. To compare the application of AA-CSIA across systems with contrasting biogeochemical cycling regimes. 3. To develop the use of AA-CSIA TP estimates for validating trophic models of exploited ecosystems. The investigators will test and refine the approach using a combination of laboratory feeding experiments and field studies across regions with differing biogeochemical cycling regimes. They will determine the applicability of the AA-CSIA approach in a variety of marine organisms assessed in controlled studies. Subsequently, ecosystem components will be sampled from the eastern tropical Pacific, coastal California and the subtropical Pacific gyre. They will also test the effects of sample preservation on the isotopic composition of individual AA to determine whether the approach can be used on archived samples. This tool will allow testing of the efficacy of ecosystem-based models currently used to gain insight into the ecological effects of fisheries removals and improve the reliability of future models required to manage marine resources. In addition to the goal of developing AA-CSIA for use as a TP indicator, the information obtained through this project will provide important species-specific biological data on the feeding behavior of marine organisms that could have implications for their resilience to anthropogenic pressures and climate change.</p>
CAMEO_Trophic_Position
largerWorkCitation
project
eng; USA
biota
oceans
north and west of the island of O'ahu
2015-05-19
Subtropical North Pacific Ocean
0
BCO-DMO catalogue of parameters from Amino acid compound-specific isotope analysis (AA-CSIA) from tissue samples from pelagic fish from R/V Kilo Moana cruise KM1123 in the north and west of the island of O'ahu in 2011
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/559190.rdf
Name: species
Units: text
Description: <p>Name of the species.</p>
http://lod.bco-dmo.org/id/dataset-parameter/559191.rdf
Name: sample
Units: alphanumeric
Description: <p>Sample identification numer.</p>
http://lod.bco-dmo.org/id/dataset-parameter/559192.rdf
Name: length
Units: millimeters (mm)
Description: <p>Length of fish in millimeters.</p>
http://lod.bco-dmo.org/id/dataset-parameter/559193.rdf
Name: year
Units: YYYY
Description: <p>4-digit year when the fish samples were collected.</p>
http://lod.bco-dmo.org/id/dataset-parameter/559194.rdf
Name: month
Units: mm (01 to 12)
Description: <p>2-digit month of year when the fish samples were collected.</p>
http://lod.bco-dmo.org/id/dataset-parameter/559195.rdf
Name: day
Units: dd (01 to 31)
Description: <p>2-digit day of month when the fish samples were collected.</p>
http://lod.bco-dmo.org/id/dataset-parameter/559196.rdf
Name: amino_acid
Units: text
Description: <p>Name of the amino acid.</p>
http://lod.bco-dmo.org/id/dataset-parameter/559197.rdf
Name: d15N_AA
Units: parts per thousand (per mil, ‰)
Description: <p>d15N value of individual the amino acid.</p>
http://lod.bco-dmo.org/id/dataset-parameter/559198.rdf
Name: stdev
Units: parts per thousand (per mil, ‰)
Description: <p>Standard deviation of the d15N value.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
60765
https://datadocs.bco-dmo.org/file/KAAGo0Eu8XpP6p/isotopes_all_AA.csv
isotopes_all_AA.csv
Primary data file for dataset ID 559181
download
https://osprey.bco-dmo.org/dataset/559181/data/download
download
onLine
dataset
<p>The majority of micronekton fish samples were collected in August 2011 using R/V Kilo Moana (KM1123) at two sites in offshore waters to the north and west of the island of O'ahu in the NPSG. Station ALOHA is the Hawaii Ocean Time-series site located north of O'ahu (22.45 N, 158 W) and Station KAHE is an offshore site located west of O'ahu at (~21.3 N, 158.3 W).</p>
<p>Large pelagic fish tissue samples were collected at sea by trained longline fishery observers of the National Oceanic and Atmospheric Administration’s (NOAA) Pacific Islands Regional Observer Program during the years 2009-2011. Approximate catch locations were reported in accordance with NOAA’s Fisheries Operations Data Confidentiality Policy (see Figure 1 of Choy et al. 2015).</p>
<p>Methods are described in Choy et al. (2015). Briefly:<br />
Outer layers of large pelagic fish tissue samples were removed with clean tools to avoid any potential sampling contamination. Only dorsal white muscle tissue of micronekton fish specimens was used for analysis. Bulk sample nitrogen (N) and carbon (C) isotope compositions of all fishes were determined using an isotope ratio mass spectrometer (IRMS; Delta PlusXP) coupled to an elemental analyzer (Conflo IV/Costech ECS 4010). Isotope values are reported in conventional delta-notation relative to the international standards atmospheric N2 and V-PDB, for N and C, respectively. A subset of large pelagic and micronekton fishes (60 of 222) was selected for&nbsp;amino acid (AA) compound-specific isotope analysis (AA-CSIA). The d15N values of individual AAs were measured using an IRMS (Delta PlusXP, Delta V Plus or MAT 253) interfaced with a gas chromatograph (Trace GC) through a GC-C III combustion furnace (980 degrees C), reduction furnace (650 degrees C), and liquid-N cold trap. All samples were analyzed in triplicate and the measured AA-d15N values were normalized to known d15N values of two coinjected internal reference compounds (norleucine [Nor] and aminoadipic acid [AAA] with d15N reference values of 19.06 o/oo and -5.8 o/oo, respectively).</p>
<p><strong>Related Publications:</strong><br />
Choy C. A., Popp B. N., Hannides C. C. S. and Drazen J. C. (2015) Trophic structure and food resources of epipelagic and mesopelagic fishes in the North Pacific Subtropical Gyre ecosystem inferred from nitrogen isotopic compositions. Limnology and Oceanography doi:<a href="http://dx.doi.org/10.1002/lno.10085" target="_blank">10.1002/lno.10085</a>. (<a href="http://dmoserv3.whoi.edu/data_docs/CAMEO_Trophic_Position/Choy_et_al_2015_Trophic_epipelagic_and_mesopelagic_fishes.pdf">PDF</a>)</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Processing:<br />
- Modified parameter names to conform with BCO-DMO naming conventions.<br />
- Replaced blanks (missing data), 'U' (unknown), and 'NA' with 'nd' to indicate 'no data'.<br />
- Transposed columns to rows for amino acid and standard deviation columns.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
gas chromatograph
gas chromatograph
PI Supplied Instrument Name: gas chromatograph PI Supplied Instrument Description:Individual amino acids were measured using an IRMS (Delta PlusXP, Delta V Plus or MAT 253) interfaced with a gas chromatograph (Trace GC). Instrument Name: Gas Analyzer Instrument Short Name:Gas Analyzer Instrument Description: Gas Analyzers - Instruments for determining the qualitative and quantitative composition of gas mixtures.
isotope ratio mass spectrometer
isotope ratio mass spectrometer
PI Supplied Instrument Name: isotope ratio mass spectrometer PI Supplied Instrument Description:Individual amino acids were measured using an IRMS (Delta PlusXP, Delta V Plus or MAT 253) interfaced with a gas chromatograph (Trace GC). Instrument Name: Isotope-ratio Mass Spectrometer Instrument Short Name:IR Mass Spec; IRMS Instrument Description: The Isotope-ratio Mass Spectrometer is a particular type of mass spectrometer used to measure the relative abundance of isotopes in a given sample (e.g. VG Prism II Isotope Ratio Mass-Spectrometer). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB16/
Longline Fishing Gear
Longline Fishing Gear
PI Supplied Instrument Name: Longline Fishing Gear PI Supplied Instrument Description:Large pelagic fish tissue samples were collected at sea by trained longline fishery observers of the National Oceanic and Atmospheric Administration’s (NOAA) Pacific Islands Regional Observer Program during the years 2009-2011. Instrument Name: Longline Fishing Gear Instrument Short Name:Longline Instrument Description: Longlining employs a central fishing line that can range from one to 50 miles long; this line is strung with smaller lines of baited hooks, dangling at evenly spaced intervals. Longlines can be set near the surface to catch pelagic fish like tuna and swordfish, or laid on the sea floor to catch deepdwelling fish like cod and halibut. (www.montereybayaquarium.org/cr/cr_seafoodwatch/sfw_gear.aspx) Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/90/
Cruise: KM1123
KM1123
R/V Kilo Moana
Community Standard Description
International Council for the Exploration of the Sea
R/V Kilo Moana
vessel
KM1123
Brian N. Popp
University of Hawaiʻi at Mānoa
R/V Kilo Moana
Community Standard Description
International Council for the Exploration of the Sea
R/V Kilo Moana
vessel