http://lod.bco-dmo.org/id/dataset/561504
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-06-30
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
CTD data from moorings collected on multiple cruises from the Gulf of Mexico and N. Atlantic, 2011-2014 (SEEPC project)
2016-12-28
publication
2016-12-28
revision
BCO-DMO Linked Data URI
2016-12-28
creation
http://lod.bco-dmo.org/id/dataset/561504
Cindy Van Dover
Duke University
principalInvestigator
David B. Eggleston
North Carolina State University - Marine, Earth and Atmospheric Sciences
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Van Dover, C., Eggleston, D. B. (2016) CTD data from moorings collected on multiple cruises from the Gulf of Mexico and N. Atlantic, 2011-2014 (SEEPC project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2016-12-28 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/561504 [access date]
CTD data from SEEPC moorings Dataset Description: Methods and Sampling: <p>Measurements taken to within 50 meters of ocean bottom of Salinity (Conductivity), Temperature, Depth, Fluorescence, and Oxygen Saturation. Various SeaBird-branded shipboard CTD instruments were calibrated, deployed, cleaned, and re-calibrated after arrival on station, depending on logistics. Data sampling interval was evenly spaced temporally, the spatial sampling interval varied depending on the winch speed, generally 1 m/s for the majority of the sampling the water column.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1029841 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1029841
completed
Cindy Van Dover
Duke University
252-504-7655
135 Duke Marine Lab Rd.
Beaufort
NC
28516
USA
clv3@duke.edu
pointOfContact
David B. Eggleston
North Carolina State University - Marine, Earth and Atmospheric Sciences
919-515-7840
32800 Faucette Drive PO Box 8208
Raleigh
NC
27695
USA
eggleston@ncsu.edu
pointOfContact
asNeeded
Unknown
cruise_id
sta
cast
ISO_DateTime_UTC
year
month
day
yrday_utc
time
lon
lat
depth
temp
sal
O2sat
fluor
press
N2O
cond
density
sound_vel
trans
CTD
theme
None, User defined
Cruise identfier
station number
cast
ISO_DateTime_UTC
year
No BCO-DMO term
day of month
UTC day of year and decimal time
time of day
longitude
latitude
depth
water temperature at measurement depth
salinity
O2 saturation
fluorescence
water pressure
Nitrous Oxide
conductivity
density
sound velocity
transmission
featureType
BCO-DMO Standard Parameters
CTD Sea-Bird
instrument
BCO-DMO Standard Instruments
AT26-15
AT21-02
CH0912
PE14-11
WS15271
OC471-02
AT29-04
service
Deployment Activity
Gulf of Mexico
Barbados seeps, Intra-American Sea
Blake Ridge, Cape Fear Diapir
Florida Escarpment
Blake Ridge Diapir, Cape Fear Diapir, and United States Western Atlantic Margin
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Connectivity in western Atlantic seep populations: Oceanographic and life-history processes underlying genetic structure
https://osprey.bco-dmo.org/project/2270
Connectivity in western Atlantic seep populations: Oceanographic and life-history processes underlying genetic structure
<p>This project will evaluate connectivity on spatial scales that match those at which vent systems are being studied (3500 km), with a set of nested seeps (within the Barbados system) within which connectivity can be explored at more local spatial scales (30 to 130 km), and with species that span depth (600 m to 3600 m) and geographic ranges (30 km to 3500 km) and that have diverse life-history characteristics. Five deep-sea seep systems in the Intra- American Sea (IAS) are targeted: Blake Ridge, Florida Escarpment, Alaminos Canyon, Brine Pool, Barbados (El Pilar, Orenoque A, Orenoque B). The primary objective is to advance our general knowledge of connectivity in the deep sea. The focus is on species and processes occurring in the IAS, with attention to oceanographic circulation, life histories, and genetics. Questions that apply in shallow-water systems motivate this study:</p>
<p>1. What phylogeographic breaks occur in the system? It is important to distinguish between phylogeographic history and connectivity. A phylogeographic break with no shared alleles between populations implies a long history of isolation or possibly cryptic speciation.</p>
<p>2. Are populations connected by ongoing migration? This is the fundamental question about connectivity and the scale of genetic variation in marine species with planktonic larvae.</p>
<p>3. What biophysical processes underlie observed connectivities? Biological processes (e.g., larval distributions in the water column, timing of reproduction, and planktonic larval duration) and physical processes of transport and dispersion interact to determine connectivity.</p>
<p>The oceanographic model for the IAS will be improved and coupled to a Lagrangian larval transport model. The field program includes time-series sampling of larvae at seeps with records of current velocities, water column sampling to determine larval distribution potential, shipboard studies of larval biology and behavior, and sampling of benthic target species. Phylogenetic and population genetic tools will be used to explore historical and contemporary gene flow. Iterative interactions among the science teams will advance our understanding of connectivity in the deep sea and to develop effective and best methods for hypothesis testing under the constraints of working in a relatively inaccessible environment. Since their discovery, deep-sea chemosynthetic ecosystems have been novel systems within which to test the generality of paradigms developed for shallow-water species. This study will explore scale-dependent biodiversity and recruitment dynamics in deep-sea seep communities, and will identify key factors underlying population persistence and maintenance of biodiversity in these patchy systems.</p>
<p><a href="http://dmoserv3.bco-dmo.org/data_docs/SEEPC/AT29-04_Zambon_map.kmz" target="_blank">Google Earth map</a> showing positions of stations, CTD, XBT, multibeam locations (KMZ file dlownload)</p>
SEEPC
largerWorkCitation
project
eng; USA
oceans
Gulf of Mexico; Barbados seeps, Intra-American Sea; Blake Ridge, Cape Fear Diapir; Florida Escarpment; Blake Ridge Diapir, Cape Fear Diapir, and United States Western Atlantic Margin
2016-12-28
Western Atlantic, Gulf of Mexico, Intra-American Sea
0
BCO-DMO catalogue of parameters from CTD data from moorings collected on multiple cruises from the Gulf of Mexico and N. Atlantic, 2011-2014 (SEEPC project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/671279.rdf
Name: cruise_id
Units: dimensionless
Description: <p>cruise identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/671280.rdf
Name: sta
Units: dimensionless
Description: <p>station identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/671281.rdf
Name: cast
Units: dimensionless
Description: <p>number of cast</p>
http://lod.bco-dmo.org/id/dataset-parameter/671282.rdf
Name: ISO_DateTime_UTC
Units: YYYY-MM-DDTHH:MM:SS[.xx]Z
Description: <p>UTC date and time ISO formatted</p>
http://lod.bco-dmo.org/id/dataset-parameter/671283.rdf
Name: year
Units: YYYY
Description: <p>year reported as yyyy</p>
http://lod.bco-dmo.org/id/dataset-parameter/671284.rdf
Name: month
Units: MM
Description: <p>month reported as mm</p>
http://lod.bco-dmo.org/id/dataset-parameter/671285.rdf
Name: day
Units: DD
Description: <p>day reported as dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/671286.rdf
Name: yrday_utc
Units: dimensionless
Description: <p>UTC day and decimal time</p>
http://lod.bco-dmo.org/id/dataset-parameter/671287.rdf
Name: time
Units: HHMM
Description: <p>start time of cast reported as hhmm</p>
http://lod.bco-dmo.org/id/dataset-parameter/671288.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude (east is positive)</p>
http://lod.bco-dmo.org/id/dataset-parameter/671289.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude (north is positive)</p>
http://lod.bco-dmo.org/id/dataset-parameter/671290.rdf
Name: depth
Units: meters
Description: <p>sampling depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/671291.rdf
Name: temp
Units: degrees Celsius
Description: <p>Temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/671292.rdf
Name: sal
Units: PSU
Description: <p>Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/671293.rdf
Name: O2sat
Units: milliliters/liters
Description: <p>oxygen concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/671294.rdf
Name: fluor
Units: milligrams/meter^3
Description: <p>fluorescence</p>
http://lod.bco-dmo.org/id/dataset-parameter/671563.rdf
Name: press
Units: decibars
Description: <p>sampling pressure</p>
http://lod.bco-dmo.org/id/dataset-parameter/671684.rdf
Name: N2O
Units: milliliters per liter
Description: <p>Nitrous Oxide</p>
http://lod.bco-dmo.org/id/dataset-parameter/671699.rdf
Name: cond
Units: Siemens per meter or milliSiemens per centimeter
Description: <p>Water conductivity</p>
http://lod.bco-dmo.org/id/dataset-parameter/671705.rdf
Name: density
Units: kilograms per meter^3
Description: <p>Water density</p>
http://lod.bco-dmo.org/id/dataset-parameter/671709.rdf
Name: sound_vel
Units: meters per second
Description: <p>Water sound velocity</p>
http://lod.bco-dmo.org/id/dataset-parameter/671710.rdf
Name: trans
Units: percent
Description: <p>Beam transmission from WET Labs C-Star</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2216799
https://datadocs.bco-dmo.org/file/m7jALrNijQ8EO7/AT2102_CTD_AT21-02.csv
AT2102_CTD_AT21-02.csv
SEEPC CTD - AT21-02
downcast only
C. Van Dover (Duke U)
version: 2016-12-28
download
533378
https://datadocs.bco-dmo.org/file/3YX4oMVFpoKKMR/AT2615_CTD_AT26-15.csv
AT2615_CTD_AT26-15.csv
SEEPC CTD - AT2615
downcast only
C. Van Dover (Duke U)
version: 2016-12-28
AT26-15 ctd_1
download
375264
https://datadocs.bco-dmo.org/file/P6EP2BKFJNx7Ok/AT2904_CTD_AT29-04.csv
AT2904_CTD_AT29-04.csv
SEEPC CTD - AT29-04
downcast only
C. Van Dover (Duke U)
version: 2016-12-28
download
343572
https://datadocs.bco-dmo.org/file/B1mxKk9h78yvo/CH0912_CTD_CH0912.csv
CH0912_CTD_CH0912.csv
SEEPC CTD - CH0912
downcast only
C. Van Dover (Duke U)
version: 2016-12-28
download
934285
https://datadocs.bco-dmo.org/file/XYl1jNXIDRkYO2/OC471-02_CTD_OC471-02.csv
OC471-02_CTD_OC471-02.csv
SEEPC CTD OC471-02
downcast only
C. Van Dover (Duke U)
version: 2016-12-28
download
1845459
https://datadocs.bco-dmo.org/file/GwrDPpKiLWPmy6/PE1411_CTD_PE14-11.csv
PE1411_CTD_PE14-11.csv
SEEPC CTD PE14-11
C. Van Dover (Duke U)
version: 2016-12-27
download
25349961
https://datadocs.bco-dmo.org/file/EKpANnQU10gxOy/WS15271_CTD_WS15271.csv
WS15271_CTD_WS15271.csv
SEEPC CTD - WS15271
downcast only
Craig Young (University of Oregon, OIMB)
version: 2016-12-27
download
https://osprey.bco-dmo.org/dataset/561504/data/download
download
onLine
dataset
<p>Measurements taken to within 50 meters of ocean bottom of Salinity (Conductivity), Temperature, Depth, Fluorescence, and Oxygen Saturation. Various SeaBird-branded shipboard CTD instruments were calibrated, deployed, cleaned, and re-calibrated after arrival on station, depending on logistics. Data sampling interval was evenly spaced temporally, the spatial sampling interval varied depending on the winch speed, generally 1 m/s for the majority of the sampling the water column.</p>
Specified by the Principal Investigator(s)
<p>If necessary, acquisition files were converted from hex to ascii, then split into upcast and downcasts. Downcasts were bin-averaged to 1 meter or 1 decibar. Extraneous parameters were retained, but are not displayed.</p>
<p><strong>BCO-DMO Processing Notes:</strong></p>
<p>Most profiles were resubmitted as converted from .hex to .cnv., bin-averaged, and the down-casts and up-casts split.<br />
BCO-DMO further processed the data as follows.</p>
<p>AT2102:<br />
The .hex files were reprocessed using Seabird Routines in Virtual Box Windows XP to output the variables in consistent order between stations.<br />
Salinity from the primary sensor was included in station 1.<br />
Files were bin-averaged on depth to be consistent with the original unaveraged file which did not include pressure.<br />
Pressure was output as a variable<br />
Casts were split into upcast and downcast.<br />
Spans were compared with original full profiles to be sure data were identical.<br />
Parameter names were made consistent with BCO-DMO standards.<br />
Flag was not displayed since it is all zeroes.</p>
<p>The following parameters were not displayed for each deployment:<br />
AT2615 -- secondary sensor data, altimeter, and flag<br />
AT2904 -- accelerometer, altimer, flag, lat and lon that were recorded at every sample (after checking with D. McVeigh)<br />
CH0912 -- flag<br />
OC471-02 -- flag<br />
PE14-11 -- nbf, lat, lon, and flag nbf = number of bottles fired<br />
WS15271 -- accelerometer altimeter Oxygen_volt, and flag</p>
<p>Variable order was not consistent between deployments. Therefore, the data is located under each deployment rather than from this landing page:<br />
AT21-02: pres, depth, temp, sal, oxygen, fluor<br />
AT2615: pres, temp, temp2, cond, trans, fluor, O2sat, alt, time_elapsed, depth, density, sal, sound_vel<br />
CH0912: depth, sal, temp, O2sat, CDOM<br />
OC471-02: depth, temp, sal, fluor, oxygen<br />
PE14-11: depth, sal, temp, oxygen, fluor<br />
AT2904: cond_mS, density, depth, fluor, lathide, lonhide, N2O, O2, sal, temp<br />
WS15271: depth, sal, temp, altimeter, cond_mS, density, oxygen, N2O, fluor</p>
<p>Dates on osprey and in top level.dat files updated to reflect versions that are currently served.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
CTD
CTD
PI Supplied Instrument Name: CTD PI Supplied Instrument Description:Sea-Bird Model varied by vessel. Instrument Name: CTD Sea-Bird Instrument Short Name:CTD Sea-Bird Instrument Description: A Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics. This instrument designation is used when specific make and model are not known or when a more specific term is not available in the BCO-DMO vocabulary. Refer to the dataset-specific metadata for more information about the specific CTD used. More information from: http://www.seabird.com/ Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/130/
Cruise: AT26-15
AT26-15
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT26-15
Cindy Van Dover
Duke University
Cruise: AT21-02
AT21-02
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT21-02
Cindy Van Dover
Duke University
http://dmoserv3.whoi.edu/data_docs/SEEPC/AT21-02_CruiseREPORT.pdf
Report describing AT21-02
Cruise: CH0912
CH0912
R/V Cape Hatteras
Community Standard Description
International Council for the Exploration of the Sea
R/V Cape Hatteras
vessel
CH0912
David B. Eggleston
North Carolina State University - Marine, Earth and Atmospheric Sciences
http://dmoserv3.whoi.edu/data_docs/SEEPC/CH0912_cruise_report.pdf
Report describing CH0912
Cruise: PE14-11
PE14-11
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE14-11
Craig M. Young
University of Oregon
http://dmoserv3.whoi.edu/data_docs/SEEPC/PE14-11_cruise_report.pdf
Report describing PE14-11
Cruise: WS15271
WS15271
R/V F.G. Walton Smith
Community Standard Description
International Council for the Exploration of the Sea
R/V F.G. Walton Smith
vessel
WS15271
Craig M. Young
University of Oregon
Cruise: OC471-02
OC471-02
R/V Oceanus
Community Standard Description
International Council for the Exploration of the Sea
R/V Oceanus
vessel
OC471-02
Cindy Van Dover
Duke University
http://dmoserv3.whoi.edu/data_docs/SEEPC/OC471-02_cruise_report.pdf
Report describing OC471-02
Cruise: AT29-04
AT29-04
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT29-04
Cindy Van Dover
Duke University
http://dmoserv3.whoi.edu/data_docs/SEEPC/AT29-04_SeepC_cruise_report.pdf
Report describing AT29-04
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
R/V Cape Hatteras
Community Standard Description
International Council for the Exploration of the Sea
R/V Cape Hatteras
vessel
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
R/V F.G. Walton Smith
Community Standard Description
International Council for the Exploration of the Sea
R/V F.G. Walton Smith
vessel
R/V Oceanus
Community Standard Description
International Council for the Exploration of the Sea
R/V Oceanus
vessel