Comparison of recruitment dynamics in five intertidal marine invertebrates following mass mortality along the northeastern Pacific coastline in 2005 (CHIPS project)

Website: https://www.bco-dmo.org/dataset/562467
Data Type: Cruise Results
Version: 1
Version Date: 2015-08-06

Project
» Ecological & genetic recovery from a massive invertebrate die-off along the central coast of California (CHIPS)
ContributorsAffiliationRole
Dawson, Michael N.University of California-Merced (UC Merced)Principal Investigator
Gaylord, BrianUniversity of California-Davis (UC Davis-BML)Co-Principal Investigator
Grosberg, Richard K.University of California-Davis (UC Davis)Co-Principal Investigator
Jurgens, Laura J.University of California-Davis (UC Davis-BML)Student
Schiebelhut, LaurenUniversity of California-Merced (UC Merced)Student, Contact
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager
Newman, SawyerWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
Twenty accessible rocky intertidal sites were selected to span the ‘kill-zone’ and peripheral locations (see list of sites in Schiebelhut et al. in prep; see also Jurgens et al. 2015). Two rocky intertidal areas were sampled per site, usually one on either side of the point of entry onto the beach and separated by approximately 100 m. We used quadrats (1m2 [4 * 0.25 m^2] or 0.0625 m^2) and swaths (2 m wide transects) to estimate juvenile and adult abundance for each target species. This data set includes counts of Pisaster ochraceus, Cryptochiton stelleri and Leptasterias sp. in quadrats and swaths along the California coast from 37.9 N to 38.9 N. The CHlPS-02 dataset has some overlap with the CHlPS-01 dataset. Data that share the same location and date represent the same collections. In the CHlPS-01 dataset from Jurgens et al. (2015), the datum presented is the sum of individuals across life-stages and across areas-within-site for each species. In the CHlPS-02 dataset from Schiebelhut et al., the data presented are the total counts within life-stage (recruit or adult) and within-area-within-site for each species. Thus, for example, for Arena Cove on 02 December 2013, the CHlPS-01 dataset states there were 44 Henricia; the CHlPS-02 dataset states there were 6 recruits plus 4 adults in Area 1 and 15 recruits plus 19 adults in Area 2.


Coverage

Spatial Extent: N:38.9128 E:-121.8634 S:36.2805 W:-123.7108
Temporal Extent: 2012-10-16 - 2013-06-25

Methods & Sampling

Quadrats for C. stelleri, Henricia sp., Leptasterias sp., P. ochraceus:
We exhaustively searched 32-40 one-meter square quadrats per site (i.e. 16-20 per each of 2 areas), recording GPS waypoint, time, percent cover of major habitat types, and abundances and sizes of target species for each quadrat. Quadrat locations were selected by first finding one of the target habitat types - surf grass, low-zone red algae, coralline turf, cobble or boulder field, urchin pools with pits either empty or occupied, or mussel bed - selecting a starting point haphazardly, and then using a random numbers table to choose specific quadrat locations. Some sites had fewer than 32 quadrats or quadrats smaller than one-square meter due to the limited time in which we could work in suitable habitat. For mussel habitat one 0.25 m x 0.25 m quadrat was used. For Schiebelhut et al. (in prep) we calculated the number of each target species summed across all quadrats surveyed within each of the two areas within sites.

Swaths for C. stelleri, Henricia sp., Leptasterias sp., P. ochraceus:
Timed, GPS-tracked, 2 m wide swath transects were nested within each of the two areas within all sites. From a distance, an approximate starting point and orientation (with landmarks) for the starting transect was selected. The GPS was set to auto-record a trackpoint every 6 seconds. Transects ran from the most shoreward to the most seaward possible suitable habitat at approximately 10 m intervals along shore, particularly targeting the low zone when the tide was the lowest, with as many transects being done as permitted by the tide. The start and end of each transect was GPS waypointed and recorded. All target species were searched for across the 2 m wide swath, with intertidal zones and habitat type recorded. A waypoint was recorded for each individual target species, with any additional species found within a meter being counted and recorded for the same waypoint. When the field of view was clear some swaths were extended to 4 meters wide. For Jurgens et al. (submitted) we calculated the number of each target species summed across all swaths within each of the two areas within sites.


Data Processing Description

To estimate swath length we first summed the Euclidean distances between consecutive GPS trackpoints. Given the GPS had an error of +/- 3 meters we smoothed the GPS tracks by averaging across two trackpoints and then by three. We selected a window size of two with which to estimate our total transect length to adjust for the noise in our swath transects but to minimize oversmoothing. (see example figure below). We identified and removed outlying trackpoints that led to a Euclidean distance >=8 meters (likely due to temporarily poor satellite signal). The distance was then recalculated between the trackpoints immediately preceding and following the removed trackpoint. Total transect search area was calculated by multiplying the total adjusted transect length by swath width. Total transect search time was estimated using field notes and GPS waypoints and trackpoints, removing 6-second intervals where < 0.05 m were traveled (suggesting this was time during which notes were being written or tissues samples were being collected).

Swath figure: Sample GPS tracks for two transects at Iversen Point, Mendocino County. The blue line is the original unsmoothed track. The red line represents a window size of two, averaging latitudes and longitudes across each pair of consecutive trackpoints.  The green line represents a window size of 3, averaging across 3 trackpoints.

map of sample track

BCO-DMO Processing Notes:

- added conventional header with dataset name, PI name, version date, reference information
- renamed parameters to BCO-DMO standard
- reformatted date from m/d/yyyy to yyyy-mm-dd
- removed spaces and special characters


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Data Files

File
CHIPS02_quad_counts.csv
(Comma Separated Values (.csv), 5.86 KB)
MD5:143b5528f5a86b11d107b6bea2b8e40b
Primary data file for dataset ID 562467

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Related Publications

(2015). Correction: Patterns of Mass Mortality among Rocky Shore Invertebrates across 100 km of Northeastern Pacific Coastline. PLOS ONE, 10(6), e0131969. https://doi.org/10.1371/journal.pone.0131969
Methods
Schiebelhut, L. M., Gaylord, B., Grosberg, R. K., Jurgens, L. J., & Dawson, M. N. (2022). Species’ attributes predict the relative magnitude of ecological and genetic recovery following mass mortality. Molecular Ecology, 31(22), 5714–5728. Portico. https://doi.org/10.1111/mec.16707
Results

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Related Datasets

IsRelatedTo
Gaylord, B., Dawson, M. N., Grosberg, R. K. (2014) Counts of seastars and chiton in quadrats and swaths, north-central California coast: Andrew Molean State Park to Manchester State Park from 2005-2014 (CHIPS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2014-10-13) Version Date 2014-10-13 http://lod.bco-dmo.org/id/dataset/528940 [view at BCO-DMO]
Gaylord, B., Dawson, M. N., Grosberg, R. K. (2014) Density by depth range of purple sea urchins along the California coast, 37.9 to 39.3 N: Andrew Molean State Park to Manchester State Park from 2005-2014 (CHIPS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2014-11-24) Version Date 2014-11-24 http://lod.bco-dmo.org/id/dataset/541036 [view at BCO-DMO]
Gaylord, B., Dawson, M. N., Grosberg, R. K. (2014) Density of purple sea urchins along the California coast, 37.8 to 39.3 N: Andrew Molean State Park to Manchester State Park from 2005-2014 (CHIPS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2014-12-20) Version Date 2014-12-20 http://lod.bco-dmo.org/id/dataset/541003 [view at BCO-DMO]
Gaylord, B., Dawson, M. N., Grosberg, R. K. (2015) Counts of Henricia sp. adults and recruits in quadrats, north-central California coast: Andrew Molean State Park to Manchester State Park from 2005-2014 (CHIPS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 4) Version Date 2015-07-15 http://lod.bco-dmo.org/id/dataset/528964 [view at BCO-DMO]

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Parameters

ParameterDescriptionUnits
seasonsequential sampling season number unitless
sitename of the site where data were taken unitless
sub_sitesite within sampling area unitless
latlatitude; north is positive decimal degrees
lonlongitude; east is positive decimal degrees
loss_zonethe site is inside (Y) or outside (N) the region across which intertidal Strongylocentrotus purpuratus were extirpated; none=No pre-HAB urchin population unitless
datesurvey date in format %Y-%M-%D unitless
areatotal square meters surveyed in quadrats at sub-site; year or time-period may be specified. meter^2
count_P_ochraceus_Rnumber of Pisaster ochraceus recruits found within an area of quadrats individuals
count_C_stelleri_Rnumber of Cryptochiton stelleri recruits found within an area of quadrats individuals
count_S_purpuratus_Rnumber of Strongylocentrotus purpuratus recruits found within an area of quadrats individuals
count_Leptasterias_Rnumber of Leptasterias aequalis recruits found within an area of quadrats individuals
count_P_ochraceus_Anumber of Pisaster ochraceus adults found within an area of quadrats individuals
count_C_stelleri_Anumber of Cryptochiton stelleri adults found within an area of quadrats individuals
count_S_purpuratus_Anumber of Strongylocentrotus purpuratus adults found within an area of quadrats individuals
count_Leptasterias_Anumber of Leptasterias aequalis adults found within an area of quadrats individuals
count_Henricia_Anumber of Henricia pumila adults found within an area of quadrats individuals
count_Henricia_Rnumber of Henricia pumila recruits found within an area of quadrats individuals


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Instruments

Dataset-specific Instrument Name
GPS
Generic Instrument Name
Global Positioning System Receiver
Generic Instrument Description
The Global Positioning System (GPS) is a U.S. space-based radionavigation system that provides reliable positioning, navigation, and timing services to civilian users on a continuous worldwide basis. The U.S. Air Force develops, maintains, and operates the space and control segments of the NAVSTAR GPS transmitter system. Ships use a variety of receivers (e.g. Trimble and Ashtech) to interpret the GPS signal and determine accurate latitude and longitude.


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Deployments

CalifCoast_Gaylord_CHIPS

Website
Platform
shoreside Calif_shore
Start Date
2005-01-01
End Date
2014-05-15
Description
Various intertidal invertebrate studies.


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Project Information

Ecological & genetic recovery from a massive invertebrate die-off along the central coast of California (CHIPS)

Coverage: Northeastern Pacific (northern California) 38-39 N


This project is a Collaborative Research project funded by an NSF RAPID grant.

Description from NSF award abstract:
The potentially important role that larval dispersal may play in determining gene flow, distributions, and population structure of marine invertebrates remains unclear despite many hundreds of descriptive comparisons of pelagic duration and population genetic structure. This lack of clarity suggests many factors may influence population genetic structure and their interactions may be complex. Difficulties studying these factors include (under normal circumstances) distinguishing local from exogenous recruitment and therefore the true distribution of dispersal distances. For example, experiments that normally could be undertaken to explore this issue are very small scale relative to the distances that many marine taxa may disperse.

In August 2011, a large-scale natural removal experiment was initiated along a 100 km stretch of the central California coast. The PIs propose to use this rare opportunity to clarify the effects of dispersal and species interactions on marine population genetic variation and community structure. They propose to study three species that suffered very high rates of mortality: an ecosystem engineer (Strongylocentrotus purpuratus, ~100% mortality), a keystone species (Pisaster ochraceus, ~10-70% mortality), and one of its competitors (Leptasterias sp., ~100% mortality). Their objectives during this first year following the natural large-scale die-off are to:

(1) quantify the abundance and distribution of the target species at sites across the impacted range and reference sites to the south and north,
(2) develop and use genetic markers to identify the sources and dispersal distances of new recruits of P. ochraceus, Leptasterias sp., and S. purpuratus that recolonize the impacted range, and
(3) describe changes in abundance of these three species and their prey and competitors at sites throughout the impacted range.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)

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