http://lod.bco-dmo.org/id/dataset/563225
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-07-29
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Unsuccessful events from Crab-Oyster Behavior study from UNC laboratory results from data from the Sapodilla Caye, Belize starting 2010 (OA - Ocean Acidification and Warming Impact on Calcification project)
2015-07-28
publication
2015-07-28
revision
BCO-DMO Linked Data URI
2015-07-28
creation
http://lod.bco-dmo.org/id/dataset/563225
Justin B. Ries
University of North Carolina at Chapel Hill
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Ries, J. B. (2015) Unsuccessful events from Crab-Oyster Behavior study from UNC laboratory results from data from the Sapodilla Caye, Belize starting 2010 (OA - Ocean Acidification and Warming Impact on Calcification project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 28 July 2015) Version Date 2015-07-28 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/563225 [access date]
Impacts of OA on Crab-Oyster Behavior - Unsuccessful Events Dataset Description: <p>Impacts of OA on Crab-Oyster Behavior - Unsuccessful Events<br />
<br />
Seawater chemistry and predatory behavior observations</p> Methods and Sampling: <p>Experiments were conducted at University of North Carolina at Chapel Hill. Organisms studied are present across much of the US Atlantic and Gulf coasts.</p>
<p>See manuscript: <a href="//bcodata.whoi.edu/OA_MarineCalcifiers/Dodd_et_al_2015.pdf" target="_blank">Ocean acidification impairs crab foraging behaviour</a></p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1031995 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1031995
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1357665 Award URL: http://www.nsf.gov/awardsearch/showAward?AWD_ID=1357665
onGoing
Justin B. Ries
University of North Carolina at Chapel Hill
781-581-7370
Northeastern University Marine Science Center 430 Nahant Rd.
Nahant
MA
01908
USA
j.ries@northeastern.edu
pointOfContact
asNeeded
Dataset Version: 28 July 2015
Unknown
Tank
PCO2
Crab_Treatment
Start_trial_time
End_trial_time
Action
Success
Action_start
Action_end
Action_time
UIC 5400
NIST-calibrated partial immersion organic-filled glass thermometer
Thermo Scientific Orion 2 Star benchtop pH meter with an Orion 9156BNWP pH probe
Closed-cell potentiometric Gran titration
Isolated 34 l tanks
theme
None, User defined
tank
treatment
time_start
time_end
action
activity and comments
time_elapsed
featureType
BCO-DMO Standard Parameters
CO2 Coulometer
Water Temperature Sensor
pH Sensor
Automatic titrator
Aquarium
instrument
BCO-DMO Standard Instruments
lab_Ries_UNC_Chapel_Hill
service
Deployment Activity
University of North Carolina - Chapel Hill
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Ocean Carbon and Biogeochemistry
http://us-ocb.org/
Ocean Carbon and Biogeochemistry
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.
OCB
largerWorkCitation
program
Investigation of the Effects of CaCO3 Saturation State and Temperature on the Calcification Rate and Skeletal Properties of Benthic Marine Calcifiers
http://www.unc.edu/~jries/index.html
Investigation of the Effects of CaCO3 Saturation State and Temperature on the Calcification Rate and Skeletal Properties of Benthic Marine Calcifiers
<p><em>Description from NSF award abstract:</em><br />
Anthropogenic elevation of atmospheric pCO2 is increasing the acidity of the oceans, thereby reducing the saturation state of seawater with respect to calcium carbonate (CaCO3). Of mounting concern is the potential impact of these changes on the ability of calcifying organisms to form their shells and skeletons. Recent studies, including pilot work conducted by investigator Ries and his colleagues on a suite of benthic marine calcifiers spanning broad taxonomic, mineralogical, and ecological ranges, have revealed that marine organisms exhibit a wide range of calcification responses to CO2-induced ocean acidification, including positive, negative, parabolic, threshold, and neutral responses. Marine calcifiers build their shells and skeletons from various forms (polymorphs) of CaCO3, most commonly aragonite, high-Mg calcite, and low-Mg calcite. These polymorphs differ greatly in their solubility in seawater and, therefore, in their potential response to CO2-induced ocean acidification. X-ray diffraction analysis of shells secreted by the organisms investigated in the pilot study reveals that the proportion of calcite (the less soluble form of CaCO3) to aragonite (the more soluble form) within their shells increases under elevated pCO2, while the Mg:Ca ratio of their calcite declines. These observations suggested that some marine calcifiers may partially adapt to a declining CaCO3 saturation state by accreting a greater proportion of the less-soluble form of CaCO3 (low-Mg calcite) at the expense of the more soluble forms (aragonite, high-Mg calcite). However, it is likely that such mineralogical and compositional changes in the shells and skeletons of marine organisms would alter their structural and biomechanical properties.</p>
<p>The project seeks to build upon the results of a pilot study by rearing a suite of benthic marine calcifiers under past (280 ppm), present (385 ppm), and predicted future (540, 840 ppm) pCO2 and under three distinct temperatures to investigate changes in: (1) their rates of calcification and linear extension; (2) the relative abundance and micron-scale distribution of the various CaCO3 polymorphs within their shells/skeletons; (3) the ultrastructure and crystal morphology of their shells/skeletons; and (4) their biomechanical properties. The research also builds upon the pilot experiments by utilizing a more thoroughly replicated study design, by more precisely constraining the chemical parameters of the experimental seawater treatments, by investigating calcification responses under 3 different temperature regimes, and by employing a "pre-industrial" pCO2 level (280 ppm). The results of the proposed research should advance our understanding of how benthic marine calcifiers shall respond to future CO2-induced changes in seawater temperature and CaCO3 saturation state. By investigating the response of organisms over the range of atmospheric pCO2 that has occurred since late Paleozoic time, this research should inform our understanding of the putative links between atmospheric pCO2, mass extinction events, and secular variation in the polymorph mineralogy of marine calcifiers throughout geologic time. Finally, comparison of the observed biological responses to variable pCO2-T scenarios with that already established for abiogenic carbonates will advance our understanding of the very mechanisms by which marine calcifiers build their shells and skeletons.</p>
<p>Results of this research project will inform the decisions of policy makers and legislators working to mitigate the impacts of CO2-induced warming and ocean acidification by establishing pCO2-T tolerances for a range of marine calcifiers.</p>
<p><strong>Note (02 Oct 2014):</strong> Funding for this project has transferred from award OCE-1031995 to OCE-1357665, coincident with Principal Investigator's affiliation change from University of North Carolina at Chapel Hill to Northeastern University.</p>
OA - Ocean Acidification and Warming Impact on Calcification
largerWorkCitation
project
eng; USA
oceans
University of North Carolina - Chapel Hill
2015-07-28
Chapel Hill, North Carolina (lab) and Mesoamerican Barrier Reef System - Sapodilla Caye, Belize (16.2 N 88.5 W)
0
BCO-DMO catalogue of parameters from Unsuccessful events from Crab-Oyster Behavior study from UNC laboratory results from data from the Sapodilla Caye, Belize starting 2010 (OA - Ocean Acidification and Warming Impact on Calcification project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/563239.rdf
Name: Tank
Units: text
Description: Experimental tank ID
http://lod.bco-dmo.org/id/dataset-parameter/563240.rdf
Name: PCO2
Units: text
Description: Acidification treatment level: control; moderate; high
http://lod.bco-dmo.org/id/dataset-parameter/563241.rdf
Name: Crab_Treatment
Units: text
Description: Crab treatment level during growth period: crab; no crab
http://lod.bco-dmo.org/id/dataset-parameter/563242.rdf
Name: Start_trial_time
Units: H:MM
Description: Start time of video segment in experimental time (time since T0; hh:mm)
http://lod.bco-dmo.org/id/dataset-parameter/563243.rdf
Name: End_trial_time
Units: H:MM
Description: End time of video segment in experimental time (time since T0; hh:mm)
http://lod.bco-dmo.org/id/dataset-parameter/563244.rdf
Name: Action
Units: text
Description: Action type: prey handling; eating; crab-crab interaction; na
http://lod.bco-dmo.org/id/dataset-parameter/563245.rdf
Name: Success
Units: text
Description: Event outcome: yes (crab ate oyster); no (crab failed to open a living oyster); shell (crab handled previously opened oyster); aggressor (crab instigated crab-crab interaction); defender (crab was the object of aggressors attack); mixed dominance (aggressor and defender difficult to distinguish; outcome varied and uncertain)
http://lod.bco-dmo.org/id/dataset-parameter/563246.rdf
Name: Action_start
Units: HH:MM:SS
Description: Start time of Action in real time (24h; hh:mm:ss)
http://lod.bco-dmo.org/id/dataset-parameter/563247.rdf
Name: Action_end
Units: HH:MM:SS
Description: End time of Action in real time (24h; hh:mm:ss)
http://lod.bco-dmo.org/id/dataset-parameter/563248.rdf
Name: Action_time
Units: HH:MM:SS
Description: Difference between Action start and Action end
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
4546
https://datadocs.bco-dmo.org/file/P66GwPyh0WRMrp/OC_Behavior_UnSuccessEvents.csv
OC_Behavior_UnSuccessEvents.csv
Primary data file for dataset ID 563225
download
https://www.bco-dmo.org/dataset/563225/data/download
download
onLine
dataset
<p>Experiments were conducted at University of North Carolina at Chapel Hill. Organisms studied are present across much of the US Atlantic and Gulf coasts.</p>
<p>See manuscript: <a href="//bcodata.whoi.edu/OA_MarineCalcifiers/Dodd_et_al_2015.pdf" target="_blank">Ocean acidification impairs crab foraging behaviour</a></p>
Specified by the Principal Investigator(s)
<p>See manuscript: <a href="//bcodata.whoi.edu/OA_MarineCalcifiers/Dodd_et_al_2015.pdf" target="_blank">Ocean acidification impairs crab foraging behaviour</a></p>
<p><strong>BCO-DMO Processing Notes</strong><br />
- Generated from original files "Behavioral data for archive.xlsx, Sheet: Unsuccessful Events (n=5)" contributed by Luke Dodd<br />
- Parameter names edited to conform to BCO-DMO naming convention found at <a href="http://usjgofs.whoi.edu/naming-guidelines.html" target="_blank">Choosing Parameter Name</a><br />
- "nd" (no data) inserted into blank cells</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
UIC 5400
UIC 5400
PI Supplied Instrument Name: UIC 5400 PI Supplied Instrument Description:The temperature within experimental tanks was measured every
other day with a NIST-calibrated partial-immersion organic-
filled glass thermometer (precision + 0.3%, accuracy + 0.4%).
Salinity was measured every other day with a YSI 3200 conduc-
tivity meter with a YSI 3440 cell (K 1⁄4 10) that was calibrated
with seawater standards of known salinity provided by the labora-
tory of Prof. A. Dickson of Scripps Institute of Oceanography.
Seawater pH was measured every other day with a Thermo Scien-
tific Orion 2 Star benchtop pH meter with an Orion 9156BNWP pH
probe, calibrated with 7.00 and 10.01 Orion NBS buffers traceable
to NIST standard reference material (for slope of the calibration
curve) and with seawater standards of known pH also provided
by Prof. Dickson’s laboratory (for y-intercept of the calibration
curve). Seawater DIC was measured via coulometry (UIC 5400)
and TA was measured via closed-cell potentiometric Gran titration
calibrated with certified Dickson TA/DIC standards. Measure-
ment of DIC and TA of the certified reference materials (CRMs)
were consistently within 0.3% of certified values. Differences
between the measured and certified TA and DIC values of
the CRMs were used to correct measurements of experimental
seawater solutions. Instrument Name: CO2 Coulometer Instrument Short Name:CO2 coulometer Instrument Description: A CO2 coulometer semi-automatically controls the sample handling and extraction of CO2 from seawater samples. Samples are acidified and the CO2 gas is bubbled into a titration cell where CO2 is converted to hydroxyethylcarbonic acid which is then automatically titrated with a coulometrically-generated base to a colorimetric endpoint. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB12
NIST-calibrated partial immersion organic-filled glass thermometer
NIST-calibrated partial immersion organic-filled glass thermometer
PI Supplied Instrument Name: NIST-calibrated partial immersion organic-filled glass thermometer PI Supplied Instrument Description:The temperature within experimental tanks was measured every
other day with a NIST-calibrated partial-immersion organic-
filled glass thermometer (precision + 0.3%, accuracy + 0.4%).
Salinity was measured every other day with a YSI 3200 conduc-
tivity meter with a YSI 3440 cell (K 1⁄4 10) that was calibrated
with seawater standards of known salinity provided by the labora-
tory of Prof. A. Dickson of Scripps Institute of Oceanography.
Seawater pH was measured every other day with a Thermo Scien-
tific Orion 2 Star benchtop pH meter with an Orion 9156BNWP pH
probe, calibrated with 7.00 and 10.01 Orion NBS buffers traceable
to NIST standard reference material (for slope of the calibration
curve) and with seawater standards of known pH also provided
by Prof. Dickson’s laboratory (for y-intercept of the calibration
curve). Seawater DIC was measured via coulometry (UIC 5400)
and TA was measured via closed-cell potentiometric Gran titration
calibrated with certified Dickson TA/DIC standards. Measure-
ment of DIC and TA of the certified reference materials (CRMs)
were consistently within 0.3% of certified values. Differences
between the measured and certified TA and DIC values of
the CRMs were used to correct measurements of experimental
seawater solutions. Instrument Name: Water Temperature Sensor Instrument Short Name:Water Temp Sensor Instrument Description: General term for an instrument that measures the temperature of the water with which it is in contact (thermometer). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/134/
Thermo Scientific Orion 2 Star benchtop pH meter with an Orion 9156BNWP pH probe
Thermo Scientific Orion 2 Star benchtop pH meter with an Orion 9156BNWP pH probe
PI Supplied Instrument Name: Thermo Scientific Orion 2 Star benchtop pH meter with an Orion 9156BNWP pH probe PI Supplied Instrument Description:The temperature within experimental tanks was measured every
other day with a NIST-calibrated partial-immersion organic-
filled glass thermometer (precision + 0.3%, accuracy + 0.4%).
Salinity was measured every other day with a YSI 3200 conduc-
tivity meter with a YSI 3440 cell (K 1⁄4 10) that was calibrated
with seawater standards of known salinity provided by the labora-
tory of Prof. A. Dickson of Scripps Institute of Oceanography.
Seawater pH was measured every other day with a Thermo Scien-
tific Orion 2 Star benchtop pH meter with an Orion 9156BNWP pH
probe, calibrated with 7.00 and 10.01 Orion NBS buffers traceable
to NIST standard reference material (for slope of the calibration
curve) and with seawater standards of known pH also provided
by Prof. Dickson’s laboratory (for y-intercept of the calibration
curve). Seawater DIC was measured via coulometry (UIC 5400)
and TA was measured via closed-cell potentiometric Gran titration
calibrated with certified Dickson TA/DIC standards. Measure-
ment of DIC and TA of the certified reference materials (CRMs)
were consistently within 0.3% of certified values. Differences
between the measured and certified TA and DIC values of
the CRMs were used to correct measurements of experimental
seawater solutions. Instrument Name: pH Sensor Instrument Short Name:pH Sensor Instrument Description: An instrument that measures the hydrogen ion activity in solutions.
The overall concentration of hydrogen ions is inversely related to its pH. The pH scale ranges from 0 to 14 and indicates whether acidic (more H+) or basic (less H+).
Closed-cell potentiometric Gran titration
Closed-cell potentiometric Gran titration
PI Supplied Instrument Name: Closed-cell potentiometric Gran titration PI Supplied Instrument Description:The temperature within experimental tanks was measured every
other day with a NIST-calibrated partial-immersion organic-
filled glass thermometer (precision + 0.3%, accuracy + 0.4%).
Salinity was measured every other day with a YSI 3200 conduc-
tivity meter with a YSI 3440 cell (K 1⁄4 10) that was calibrated
with seawater standards of known salinity provided by the labora-
tory of Prof. A. Dickson of Scripps Institute of Oceanography.
Seawater pH was measured every other day with a Thermo Scien-
tific Orion 2 Star benchtop pH meter with an Orion 9156BNWP pH
probe, calibrated with 7.00 and 10.01 Orion NBS buffers traceable
to NIST standard reference material (for slope of the calibration
curve) and with seawater standards of known pH also provided
by Prof. Dickson’s laboratory (for y-intercept of the calibration
curve). Seawater DIC was measured via coulometry (UIC 5400)
and TA was measured via closed-cell potentiometric Gran titration
calibrated with certified Dickson TA/DIC standards. Measure-
ment of DIC and TA of the certified reference materials (CRMs)
were consistently within 0.3% of certified values. Differences
between the measured and certified TA and DIC values of
the CRMs were used to correct measurements of experimental
seawater solutions. Instrument Name: Automatic titrator Instrument Short Name:Automatic titrator Instrument Description: Instruments that incrementally add quantified aliquots of a reagent to a sample until the end-point of a chemical reaction is reached. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB12/
Isolated 34 l tanks
Isolated 34 l tanks
PI Supplied Instrument Name: Isolated 34 l tanks PI Supplied Instrument Description:Crabs and oysters were raised in isolated 34 l tanks for 71 days in seawater Instrument Name: Aquarium Instrument Short Name:Aquarium Instrument Description: Aquarium - a vivarium consisting of at least one transparent side in which water-dwelling plants or animals are kept
Deployment: lab_Ries_UNC_Chapel_Hill
lab_Ries_UNC_Chapel_Hill
Ries
laboratory
lab_Ries_UNC_Chapel_Hill
Justin B. Ries
University of North Carolina at Chapel Hill
http://www.unc.edu/~jries/index.html
Report describing lab_Ries_UNC_Chapel_Hill
Ries
laboratory