http://lod.bco-dmo.org/id/dataset/565305
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-09-01
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Metadata used for developing model for transmission of the sponge disease Aplysina Red Band Syndrome from reef surveys conducted in the Exuma Cays, Bahamas, and Carrie Bow Cay, Belize from 2009-2014
2015-09-01
publication
2015-09-01
revision
BCO-DMO Linked Data URI
2015-09-01
creation
http://lod.bco-dmo.org/id/dataset/565305
Deborah J. Gochfeld
University of Mississippi
principalInvestigator
Marilyn Brandt
University of the Virgin Islands Center for Marine and Environmental Studies
principalInvestigator
Julie Olson
University of Alabama-Tuscaloosa
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Gochfeld, D. J., Olson, J., Brandt, M. (2015) Metadata used for developing model for transmission of the sponge disease Aplysina Red Band Syndrome from reef surveys conducted in the Exuma Cays, Bahamas, and Carrie Bow Cay, Belize from 2009-2014. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 01 Sept 2015) Version Date 2015-09-01 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/565305 [access date]
Metadata used for developing model for transmission of the sponge disease Aplysina Red Band Syndrome. Dataset Description: <p>See related publication: Easson et al. (2013)</p> Methods and Sampling: <p><strong>Collection of data:</strong><br />
Data were generated from repeated 100 m<sup>2</sup> quadrats on two patch reefs in the Exuma Cays, Bahamas (Big Point, Rainbow Gardens) and two reefs near Carrie Bow Cay, Belize (Patch reef 1, Patch reef 2). Reefs are all in 5 m water depth. In Bahamas, the Big Point quadrat was surveyed 8 times (May 2009, May 2010, May/July/September 2011, June 2012, August 2013, July 2014) and the Rainbow Gardens quadrat was surveyed 6 times (May 2010, July/September 2011, June 2012, August 2013, July 2014). This sampling schedule spans the interval during which Hurricane Irene (Category 3) impacted these reefs in the Bahamas on 27 August 2011 (Easson et al. 2013). In Belize, quadrats on both reefs were surveyed twice (May 2012, June 2013).</p>
<p>During each survey, the entire quadrat was photographed in 1 m<sup>2</sup>, and every individual <em>Aplysina cauliformis </em>sponge was marked on an underwater map and total length was measured to the nearest cm. Whether the sponge was healthy or infected by <em>Aplysina </em>Red Band Syndrome was also recorded.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1214303 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1214303
completed
Deborah J. Gochfeld
University of Mississippi
662-915-6769
National Center for Natural Products Research P.O. Box 1848
University
MS
38677
USA
gochfeld@olemiss.edu
pointOfContact
Marilyn Brandt
University of the Virgin Islands Center for Marine and Environmental Studies
340-693-1379
2 John Brewers Bay
St. Thomas, USVI
00802
mbrandt@uvi.edu
pointOfContact
Julie Olson
University of Alabama-Tuscaloosa
205-348-2633
801 University Blvd. Box 870344
Tuscaloosa
AL
35487
USA
jolson@biology.as.ua.edu
pointOfContact
asNeeded
Dataset Version: 01 Sept 2015
Unknown
location
site
lat
lon
date
month
year
healthy
diseased
total
disease_prevalence
healthy_healthy_contacts
healthy_diseased_contacts
diseased_diseased_contacts
total_contacts_w_diseased
proportion_transmission
pcnt_transmission
notes
theme
None, User defined
No BCO-DMO term
site
latitude
longitude
date
month of year
year
comments
featureType
BCO-DMO Standard Parameters
Camera
instrument
BCO-DMO Standard Instruments
Bahamas_Gochfeld
Belize_Gochfeld
service
Deployment Activity
Exuma Cays, Bahamas
Carrie Bow Cay, Belize
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Developing a model for transmission of an infectious disease of marine sponges
https://osprey.bco-dmo.org/project/559372
Developing a model for transmission of an infectious disease of marine sponges
<p><em>Description from NSF award abstract:</em><br />
Diseases of marine invertebrates have been shown to be primary causes of the accelerating destruction of Caribbean coral reef systems. Diseases affecting natural populations threaten biodiversity, resilience and the ecological balance of communities, as well as the ecosystem services they provide. To date, most studies of diseases on reefs have focused on corals, however, reports of sponge diseases have also increased across the globe. On Caribbean reefs, sponges are often a dominant component of the reef biomass,and thus play an important role in the ecology of these ecosystems. The most well described disease affecting Caribbean sponges is Aplysina Red Band Syndrome (ARBS), which affects sponges of the genus Aplysina, resulting in reduced growth, tissue necrosis and breakage at the site of the lesion, particularly during storm events. Understanding how diseases emerge and are transmitted within marine ecosystems is critical for maintaining a healthy level of biodiversity, particularly if we are to gain any predictive power in a rapidly-changing environment. Testing models of disease transmission using extensive field observations and laboratory analyses will contribute to a better understanding of disease processes and developing a transmission model for ARBS requires detailed knowledge about the pathogen-host interaction and pathogen reservoirs in the environment. While a large body of information regarding the ecology and physiology of ARBS-infected sponges is available it is recognized that modeling the transmission dynamics requires a more focused and collaborative approach. This project will develop and test a model of marine disease processes that includes the role of polymicrobial infections, sources and sinks of the pathogen(s), and the ontogeny of this disease within a model host sponge species (<em>Aplysina cauliformis</em>).</p>
<p>This novel approach is a high-risk venture (i.e., a timely idea lacking requisite results) with high pay-off potential (i.e., the results will fundamentally enhance our understanding of disease transmission within marine sponges). In this respect, the proposal is appropriate for EAGER funding. The principal investigators will use modern techniques such as high throughput sequencing and incorporate these approaches as a new tools in their laboratories as well as in their undergraduate and graduate courses. Graduate and undergraduate students will also be provided with multidisciplinary hands-on research experiences and will participate in sponge disease surveys to test the newly developed transmission model. Public seminars will be presented to discuss the implications of marine diseases coral reefs and to highlight the potential utility of disease models for the effective management of marine resources. Results from the proposed research will further our knowledge of disease transmission dynamics and enhance our understanding of the role of diseases in the ecology of coral reef ecosystems.</p>
<p><strong>Selected publications related to this research:</strong><br />
Olson JB, Thacker RW, Gochfeld DJ (2014) Molecular community profiling reveals impacts of time, space, and disease status on the bacterial community associated with the Caribbean sponge <em>Aplysina cauliformis</em>. FEMS Microbiology Ecology 87:268-279. doi:<a href="http://dx.doi.org/10.1111/1574-6941.12222" target="_blank">10.1111/1574-6941.12222</a></p>
<p>Easson CG, Slattery M, Momm HG, Olson JB, Thacker RW, Gochfeld DJ (2013) Exploring individual- to population-level impacts of disease on coral reef sponges: using spatial analysis to assess the fate, dynamics, and transmission of <em>Aplysina</em> Red Band Syndrome (ARBS). PLoS One 8(11): e79976. doi:<a href="http://dx.doi.org/10.1371/journal.pone.0079976" target="_blank">10.1371/journal.pone.0079976</a></p>
<p>Gochfeld DJ, Easson CG, Freeman CJ, Thacker RW, Olson JB (2012) Disease and nutrient enrichment as potential stressors on the Caribbean sponge <em>Aplysina cauliformis </em>and its bacterial symbionts. Marine Ecology Progress Series 456:101-111. doi:<a href="http://dx.doi.org/10.3354/meps09716" target="_blank"><span style="font-size:12px">10.3354/meps09716 </span></a></p>
<p>Gochfeld DJ, Kamel HN, Olson JB, Thacker RW (2012) Trade-offs in defensive metabolite production but not ecological function in healthy and diseased sponges. Journal of Chemical Ecology 38:451-462. doi:<a href="http://dx.doi.org/10.1007/s10886-012-0099-5" target="_blank">10.1007/s10886-012-0099-5</a></p>
<p>Gochfeld DJ, Schlöder C, Thacker RW (2007) Sponge Community Structure and Disease Prevalence on coral reefs in Bocas del Toro, Panama. In: Custódio MR, Lõbo-Hajdu G, Hajdu E, Muricy G (eds) <em>Porifera Research: Biodiversity, Innovation, and Sustainability</em>. Série Livros 28. Museu Nacional, Rio de Janeiro. Pp 335-343. URL: <a href="http://hdl.handle.net/10088/12017" target="_blank">http://hdl.handle.net/10088/12017 </a></p>
<p>Olson J, Gochfeld D, Slattery M (2006) <em>Aplysina</em> red band syndrome: a new threat to Caribbean sponges. Diseases of Aquatic Organisms 71:163-168. doi:<a href="http://dx.doi.org/10.3354/dao071163" target="_blank">10.3354/dao071163</a></p>
Sponge Disease Model
largerWorkCitation
project
eng; USA
biota
oceans
Exuma Cays, Bahamas; Carrie Bow Cay, Belize
-88.089316
-76.1353
16.80436
23.79663
2009-05-01
2014-07-01
Exuma, Bahamas; Carrie Bow Cay, Belize; St. Thomas, USVI
0
BCO-DMO catalogue of parameters from Metadata used for developing model for transmission of the sponge disease Aplysina Red Band Syndrome from reef surveys conducted in the Exuma Cays, Bahamas, and Carrie Bow Cay, Belize from 2009-2014
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/640626.rdf
Name: location
Units: dimensionless
Description: <p>Site location (Belize or Bahamas).</p>
http://lod.bco-dmo.org/id/dataset-parameter/640627.rdf
Name: site
Units: dimensionless
Description: <p>Site name.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640628.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude of site.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640629.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude of site.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640630.rdf
Name: date
Units: dimensionless
Description: <p>Month and year of sampling.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640631.rdf
Name: month
Units: mm (01 to 12)
Description: <p>2-digit month of sampling.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640632.rdf
Name: year
Units: YYYY
Description: <p>4-digit year of sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/640633.rdf
Name: healthy
Units: dimensionless
Description: <p>Number of healthy sponges.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640634.rdf
Name: diseased
Units: dimensionless
Description: <p>Number of diseased sponges.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640635.rdf
Name: total
Units: dimensionless
Description: <p>Total number of sponges (healthy + diseased).</p>
http://lod.bco-dmo.org/id/dataset-parameter/640636.rdf
Name: disease_prevalence
Units: percentage (%)
Description: <p>Disease prevalence = (number diseased/total) x 100</p>
http://lod.bco-dmo.org/id/dataset-parameter/640637.rdf
Name: healthy_healthy_contacts
Units: dimensionless
Description: <p>Healthy-healthy sponge contacts.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640638.rdf
Name: healthy_diseased_contacts
Units: dimensionless
Description: <p>Healthy-diseased sponge contacts.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640639.rdf
Name: diseased_diseased_contacts
Units: dimensionless
Description: <p>Diseased-diseased sponge contacts.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640640.rdf
Name: total_contacts_w_diseased
Units: dimensionless
Description: <p>Total contacts with diseased sponges (sum of healthy_diseased_contacts and diseased_diseased_contacts)</p>
http://lod.bco-dmo.org/id/dataset-parameter/640641.rdf
Name: proportion_transmission
Units: Alpha value (D:D/total)
Description: <p>Proportion of Disease contacts that resulted in transmission.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640642.rdf
Name: pcnt_transmission
Units: percent (%)
Description: <p>Percent transmission = proportion_transmission x 100.</p>
http://lod.bco-dmo.org/id/dataset-parameter/640643.rdf
Name: notes
Units: dimensionless
Description: <p>Notes.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2046
https://datadocs.bco-dmo.org/file/R88XyR4hQJR0Bl/Quadrat_metadata.csv
Quadrat_metadata.csv
Primary data file for dataset ID 565305
download
https://osprey.bco-dmo.org/dataset/565305/data/download
download
onLine
dataset
<p><strong>Collection of data:</strong><br />
Data were generated from repeated 100 m<sup>2</sup> quadrats on two patch reefs in the Exuma Cays, Bahamas (Big Point, Rainbow Gardens) and two reefs near Carrie Bow Cay, Belize (Patch reef 1, Patch reef 2). Reefs are all in 5 m water depth. In Bahamas, the Big Point quadrat was surveyed 8 times (May 2009, May 2010, May/July/September 2011, June 2012, August 2013, July 2014) and the Rainbow Gardens quadrat was surveyed 6 times (May 2010, July/September 2011, June 2012, August 2013, July 2014). This sampling schedule spans the interval during which Hurricane Irene (Category 3) impacted these reefs in the Bahamas on 27 August 2011 (Easson et al. 2013). In Belize, quadrats on both reefs were surveyed twice (May 2012, June 2013).</p>
<p>During each survey, the entire quadrat was photographed in 1 m<sup>2</sup>, and every individual <em>Aplysina cauliformis </em>sponge was marked on an underwater map and total length was measured to the nearest cm. Whether the sponge was healthy or infected by <em>Aplysina </em>Red Band Syndrome was also recorded.</p>
Specified by the Principal Investigator(s)
<p><strong>Data analysis:</strong><br />
Each sponge was georeferenced onto a map generated from the quadrat images in ArcGIS to create a shapefile in which each sponge’s location, size, number of branches and health status were recorded. For each quadrat at each point in time, the numbers of contacts between healthy-healthy, healthy-diseased and diseased-diseased sponges were calculated based on sponge location, total length and number of branches (based on methods in Easson et al. 2013). Percent of disease transmission was calculated as the percent of all sponge contacts that were between two diseased sponges.</p>
<p>Download the <a href="http://datadocs.bco-dmo.org/docs/gochfeld/Sponge_Disease_Modeling/data_docs/565305/Shapefiles.zip" target="_blank">shapefiles here</a> (225 kb zip file)</p>
<p>BCO-DMO Processing Notes:<br />
- Modified parameter names to conform with BCO-DMO naming conventions;<br />
- Added lat and lon values from the metadata form;<br />
- Replaced spaces with underscores in the site column;<br />
- Replaced commas with semi-colons in the notes column;<br />
- 14-Nov-2018: removed embargo on dataset.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/
Deployment: Bahamas_Gochfeld
Bahamas_Gochfeld
Gochfeld_lab
laboratory
Bahamas_Gochfeld
Deborah J. Gochfeld
University of Mississippi
Deployment: Belize_Gochfeld
Belize_Gochfeld
Gochfeld_lab
laboratory
Belize_Gochfeld
Deborah J. Gochfeld
University of Mississippi
Gochfeld_lab
laboratory