http://lod.bco-dmo.org/id/dataset/566880
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-09-14
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Moored ADCP data from the Fixed Station cruises of the TRANSPORT program collected from the R/V Hugh R. Sharp cruises in the Choptank River, Chesapeake Bay during 2011-2012 (TRANSPORT project)
2015-09-21
publication
2015-09-21
revision
BCO-DMO Linked Data URI
2015-09-21
creation
http://lod.bco-dmo.org/id/dataset/566880
Elizabeth North
University of Maryland Center for Environmental Science
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: North, E. (2015) Moored ADCP data from the Fixed Station cruises of the TRANSPORT program collected from the R/V Hugh R. Sharp cruises in the Choptank River, Chesapeake Bay during 2011-2012 (TRANSPORT project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2015-09-21 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/566880 [access date]
Moored ADCP data from the Fixed Station cruises of the TRANSPORT program, 2011-2012 Dataset Description: <p>The ADCP data were collected in the Choptank River at four fixed locations in July 2011 and 2012.</p> Methods and Sampling:
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0829512 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0829512
completed
Elizabeth North
University of Maryland Center for Environmental Science
410-221-8497
5745 Lovers Lane
Cambridge
MD
21613
USA
enorth@umces.edu
pointOfContact
asNeeded
Dataset Version: 2
Unknown
cruise_name
cruise_id
year
month
day
hr_UTC
min
sec
julian_day
deploy_id
ensemble
lat_start
lon_start
bin_range
elev
depth
total_depth_echo
curr_spd
curr_dirT
east_vel
north_vel
vert_vel
error_vel
dudz
princax
along_vel
cross_vel
percent_good
temperature
heading_M
heading_T
pitch
roll
corr_bm1
corr_bm2
corr_bm3
corr_bm4
intens_bm1
intens_bm2
intens_bm3
intens_bm4
ISO_DateTime_UTC
time_UTC
ADCP
theme
None, User defined
cruise name
Cruise identfier
year
month of year
day of month
hour_gmt
minute_gmt
seconds_gmt
Julian day as a decimal (time elapsed in days from 00:00 on January 1st 4713 BC)
deployment number
No BCO-DMO term
latitude at start time of measurement
longitude at start time of measurement
altitude
depth
Absolute current speed
absolute current direction
Uranium
Vanadium
Vertical velocity of water current
water temperature at measurement depth
heading
pitch
roll
ISO_DateTime_UTC
time_utc
featureType
BCO-DMO Standard Parameters
Acoustic Doppler Current Profiler
instrument
BCO-DMO Standard Instruments
HRS110714EN
HRS120711EN
service
Deployment Activity
Choptank River, Chesapeake Bay
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Integrating field methods and numerical models to quantify the links between larval transport, connectivity, and population dynamics
http://northweb.hpl.umces.edu/TRANSPORT/home.htm
Integrating field methods and numerical models to quantify the links between larval transport, connectivity, and population dynamics
<p>Additional information can be found at the TRANSPORT website: <a href="http://northweb.hpl.umces.edu/TRANSPORT/home.htm" target="_blank">http://northweb.hpl.umces.edu/TRANSPORT/home.htm</a></p>
<p><em>Project description:</em><br />
This coupled field-and-modeling research project is designed to address fundamental, cutting-edge questions that will significantly enhance our understanding of physical-biological interactions in planktonic organisms and quantify how pelagic life stages influence population dynamics. Technological advances in field methodology and numerical modeling will be integrated and applied to investigate and compare how circulation patterns, larval transport, sub-population connectivity, and population dynamics of the Eastern oyster, <em>Crassostrea virginica</em>, respond to environmental variability and habitat alteration. This project will provide information that will significantly enhance the restoration and management of oysters.</p>
<p>Physical-biological interactions are an integral part of understanding fish, bivalve, and crustacean early-life history and the processes that affect inter-annual variability in their recruitment to reproducing populations. The combined modeling and field approach builds on existing state-of-the-art models, it applies a new technology that will significantly advance our ability to investigate in-situ bivalve larvae dynamics, and it will generate critical information about the early life of oysters (timing of spawning, larval behavior) that is necessary for enhancing our understanding and prediction of recruitment processes.</p>
<p>This research will also advance our understanding of population dynamics of organisms with a pelagic life stages by making quantitative links between larval transport and a full life-cycle model. In doing so, it will provide improved understanding of the inter-relationships between, and relative importance of, larval transport, the connectivity of different reef systems, and adult growth, mortality, and gamete production, and how these relationships are influenced by changes in physical conditions and habitat.</p>
<p>Although focused on the oyster, <em>Crassostrea virginica</em>, the ecological studies and comparisons will result in a significant enhancement in our understanding of the interactions between physical conditions and a suite of bivalve species. This program will benefit society by providing new insights and understanding that will enhance fisheries management capabilities. The numerical tools developed will have the resolution appropriate for helping to guide oyster restoration programs, locate optimal sanctuaries (i.e., marine protected areas), and inform spatial management of oyster harvest. Although the quantitative tools and information generated will directly support oyster management and restoration activities of state and federal partners in Chesapeake Bay, the findings and tools developed in this project will be applicable to many other systems where bivalves comprise an important component of commercial and recreational fisheries. A PhD graduate student will be trained in field and numerical modeling research in this coupled field-and-modeling program. In addition to gaining a solid foundation in a cutting-edge field, the student will have the opportunity to develop science communication skills and interact with management agency representatives.</p>
<p> </p>
<p><strong>Publications Produced as a Result of this Research:</strong></p>
<p>Gallego, A., E.W. North and E.D. Houde. 2012. Understanding and quantifying mortality in pelagic, early life stages of marine organisms — Old challenges and new perspectives. Journal of Marine Systems 93: 1-3.</p>
<p>Goodwin, J. D., and E.W. North. In prep. Identifying factors that influence the swimming behavior of <em>Crassostrea virginica</em> larvae in Choptank River and calculating their mortality.</p>
<p>Goodwin, J. D., E. W. North, and C. M. Thompson. 2014. Evaluating and improving a semi-automated image analysis technique for identifying bivalve larvae. Limnology and Oceanography: Methods 12: 548-562. DOI: 10.4319/lom.2014.12.548</p>
<p>Goodwin, J. D., E. W. North, and V. S. Kennedy. 2016. Identification of eastern oyster <em>Crassostrea virginica</em> larvae using polarized light microscopy in a mesohaline region of Chesapeake Bay. Journal of Shellfish Research 35(1): 157-168.</p>
<p>Goodwin, J. D., E. W. North, C. M. Thompson, I. Mitchell and H.M McFadden. In press. Improving a semi-automated classification technique for bivalve larvae: automated image acquisition and measures of quality control. Limnology and Oceanography: Methods.</p>
<p>North, E. W., D. M. King, J. Xu, R. R. Hood, R. I. E. Newell, K. T. Paynter, M. L. Kellogg, M. K. Liddel, and D. F. Boesch. 2010. Linking optimization and ecological models in a decision support tool for oyster restoration and management. Ecological Applications 20(3): 851–866.</p>
<p>Spires, J. E., E. W. North, and W. Long. In prep. The influence of salinity-induced mortality on larval transport between eastern oyster (<em>Crassostrea virginica</em>) reefs in an oligohaline estuary: model simulations and implications for restoration. Estuaries and Coasts.</p>
<p>Thompson, C. M., E. W. North, V. S. Kennedy, and S. N. White. 2015. Classifying bivalve larvae using shell pigments identified by Raman spectra. Analytical and Bioanalytical Chemistry 407:3591-3604, DOI 10.1007/s00216-015-8575-8</p>
<p>Thompson, C.M., E.W. North, S.N. White, and S.M. Gallager. 2014. An analysis of bivalve larval shell pigments using micro-Raman spectroscopy. Journal of Raman Spectroscopy 45(5):349-358</p>
<p><strong>Dissertations and Theses:</strong></p>
<p>Goodwin, J. D. 2015. Integrating automated imaging and a novel identification technique to estimate mortality and factors that determine the vertical distribution of <em>Crassostrea virginica</em> larvae. Ph.D. Dissertation. University of Maryland College Park and the University of Maryland Center for Environmental Science.</p>
<p>Spires, J. E. The exchange of eastern oyster (<em>Crassostrea virginica</em>) larvae between subpopulations in the Chotpank and Little Choptank Rivers: model simulations, the influence of salinity, and implications for restoration. Master of Science Thesis, University of Maryland College Park and Center for Environmental Science, 79 pp.</p>
<p><strong>Books and One-Time Proceedings:</strong></p>
<p>Anthony, Z. 2014. Optimal microscope and camera settings for counting and identifying copepods (<em>Acartia tonsa</em>) using a newly developed semi-automated image analysis technology. Undergraduate Research Report. 14 pp.</p>
<p>Hinson, K. I., E.W. North, and C.M. Thompson. 2011. New technologies to support shellfish restoration. Research Experience for Undergraduates (REU) final report.</p>
<p>Mitchell, I. 2013. Updates in LTRANS v.2b. University of Maryland Center for Environmental Science, Horn Point Laboratory. Cambridge, MD. 2 pp.</p>
<p>North, E. W. 2010. Q&A: Elizabeth North. 10/01/2009-09/30/2010, ICES Insight, September 2010, vol. 47, p. 43-44.</p>
<p>Schlag, Z. R., and E. W. North. 2012. Lagrangian TRANSport model (LTRANS v.2) User’s Guide. University of Maryland Center for Environmental Science, Horn Point Laboratory. Cambridge, MD. 183 pp.</p>
TRANSPORT
largerWorkCitation
project
eng; USA
oceans
Choptank River, Chesapeake Bay
2015-09-21
0
BCO-DMO catalogue of parameters from Moored ADCP data from the Fixed Station cruises of the TRANSPORT program collected from the R/V Hugh R. Sharp cruises in the Choptank River, Chesapeake Bay during 2011-2012 (TRANSPORT project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/566896.rdf
Name: cruise_name
Units: unitless
Description: <p>Cruise name as given by PI</p>
http://lod.bco-dmo.org/id/dataset-parameter/566897.rdf
Name: cruise_id
Units: unitless
Description: <p>Official cruise identification</p>
http://lod.bco-dmo.org/id/dataset-parameter/566898.rdf
Name: year
Units: YYYY
Description: <p>Calendar year</p>
http://lod.bco-dmo.org/id/dataset-parameter/566899.rdf
Name: month
Units: mm
Description: <p>Calendar month</p>
http://lod.bco-dmo.org/id/dataset-parameter/566900.rdf
Name: day
Units: dd
Description: <p>Day of month</p>
http://lod.bco-dmo.org/id/dataset-parameter/566901.rdf
Name: hr_UTC
Units: HH
Description: <p>Hour in UTC time base (same as GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/566902.rdf
Name: min
Units: MM
Description: <p>Minutes of hour</p>
http://lod.bco-dmo.org/id/dataset-parameter/566903.rdf
Name: sec
Units: SS
Description: <p>Seconds of minute</p>
http://lod.bco-dmo.org/id/dataset-parameter/566904.rdf
Name: julian_day
Units: unitless
Description: <p>Numeric time in Julian day for year in UTC time base</p>
http://lod.bco-dmo.org/id/dataset-parameter/566905.rdf
Name: deploy_id
Units: unitless
Description: <p>Deployment identification string</p>
http://lod.bco-dmo.org/id/dataset-parameter/566906.rdf
Name: ensemble
Units: unitless
Description: <p>ADCP ensemble number. Each recorded profile has a unique ensemble number. Ensembles were recorded at 1 second intervals. Mean current data represents average of 300; 1 Hz ensembles each; therefore from one avg ensemble to the next jumps by 300.</p>
http://lod.bco-dmo.org/id/dataset-parameter/566907.rdf
Name: lat_start
Units: decimal degrees
Description: <p>Latitude geographic coordinate of site in decimal degree format</p>
http://lod.bco-dmo.org/id/dataset-parameter/566908.rdf
Name: lon_start
Units: decimal degrees
Description: <p>Longitude geographic coordinate of site in decimal degree format. Minus indicates western hemisphere</p>
http://lod.bco-dmo.org/id/dataset-parameter/566909.rdf
Name: bin_range
Units: meters
Description: <p>Distance from ADCP transducer to center of measurement bin in meters</p>
http://lod.bco-dmo.org/id/dataset-parameter/566910.rdf
Name: elev
Units: meters
Description: <p>Elevation in meters of center of measurement bin above seabed</p>
http://lod.bco-dmo.org/id/dataset-parameter/566911.rdf
Name: depth
Units: meters
Description: <p>Depth in meters to center of measurement bin; determined from water depth estimate from ADCP pressure sensor (if available) or ADCP acoustic surface tracking.</p>
http://lod.bco-dmo.org/id/dataset-parameter/566913.rdf
Name: total_depth_echo
Units: meters
Description: <p>Total water depth in meters from ADCP acoustic surface tracking estimate. This method can be unreliable under certain environmental conditions and is generally used as back-up if pressure sensor is unavailable</p>
http://lod.bco-dmo.org/id/dataset-parameter/566914.rdf
Name: curr_spd
Units: meters/second
Description: <p>Current magnitude (speed)</p>
http://lod.bco-dmo.org/id/dataset-parameter/566915.rdf
Name: curr_dirT
Units: degrees
Description: <p>Direction of current travel in degrees true (Oceanographic convention)</p>
http://lod.bco-dmo.org/id/dataset-parameter/566916.rdf
Name: east_vel
Units: meters per second
Description: <p>Easterly current velocity in meters per second. Negative values mean westerly directed current component</p>
http://lod.bco-dmo.org/id/dataset-parameter/566917.rdf
Name: north_vel
Units: meters per second
Description: <p>Northerly current velocity in meters per second. Negative values mean southerly directed current component</p>
http://lod.bco-dmo.org/id/dataset-parameter/566918.rdf
Name: vert_vel
Units: meters per second
Description: <p>Vertical (+ up) current velocity in meters per second</p>
http://lod.bco-dmo.org/id/dataset-parameter/566919.rdf
Name: error_vel
Units: meters per second
Description: <p>Error velocity from ADCP in meters per second</p>
http://lod.bco-dmo.org/id/dataset-parameter/566920.rdf
Name: dudz
Units: per second
Description: <p>Resultant vertical velocity shear [s-1]. Used in Richardson Number calculation</p>
http://lod.bco-dmo.org/id/dataset-parameter/566921.rdf
Name: princax
Units: degrees
Description: <p>Direction of principal axis in degrees true</p>
http://lod.bco-dmo.org/id/dataset-parameter/566922.rdf
Name: along_vel
Units: meters per second
Description: <p>Along channel current velocity in meters per second. Ebb direction is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/566923.rdf
Name: cross_vel
Units: meters per second
Description: <p>Cross channel current velocity in meters per second. Right-hand coordinate system used with thumb pointing in up direction</p>
http://lod.bco-dmo.org/id/dataset-parameter/566924.rdf
Name: percent_good
Units: percent
Description: <p>Percent good pings from internal ADCP quality checks</p>
http://lod.bco-dmo.org/id/dataset-parameter/566925.rdf
Name: temperature
Units: degrees Celsius
Description: <p>Water temperature at ADCP transducer</p>
http://lod.bco-dmo.org/id/dataset-parameter/566926.rdf
Name: heading_M
Units: degrees
Description: <p>ADCP heading in degrees magnetic from internal compass</p>
http://lod.bco-dmo.org/id/dataset-parameter/566927.rdf
Name: heading_T
Units: degrees
Description: <p>ADCP heading in degrees true. Local magnetic variation applied to Heading_M (mv=-11.2)</p>
http://lod.bco-dmo.org/id/dataset-parameter/566928.rdf
Name: pitch
Units: degrees
Description: <p>ADCP pitch from internal tilt sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/566929.rdf
Name: roll
Units: degrees
Description: <p>ADCP roll from internal title sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/566930.rdf
Name: corr_bm1
Units: unitless
Description: <p>ADCP beam 1 correlation value (0-255 scale)</p>
http://lod.bco-dmo.org/id/dataset-parameter/566931.rdf
Name: corr_bm2
Units: unitless
Description: <p>ADCP beam 2 correlation value (0-255 scale)</p>
http://lod.bco-dmo.org/id/dataset-parameter/566932.rdf
Name: corr_bm3
Units: unitless
Description: <p>ADCP beam 3 correlation value (0-255 scale)</p>
http://lod.bco-dmo.org/id/dataset-parameter/566933.rdf
Name: corr_bm4
Units: unitless
Description: <p>ADCP beam 4 correlation value (0-255 scale)</p>
http://lod.bco-dmo.org/id/dataset-parameter/566934.rdf
Name: intens_bm1
Units: decibels
Description: <p>ADCP beam 1 echo intensity</p>
http://lod.bco-dmo.org/id/dataset-parameter/566935.rdf
Name: intens_bm2
Units: decibels
Description: <p>ADCP beam 2 echo intensity</p>
http://lod.bco-dmo.org/id/dataset-parameter/566936.rdf
Name: intens_bm3
Units: decibels
Description: <p>ADCP beam 3 echo intensity</p>
http://lod.bco-dmo.org/id/dataset-parameter/566937.rdf
Name: intens_bm4
Units: decibels
Description: <p>ADCP beam 4 echo intensity</p>
http://lod.bco-dmo.org/id/dataset-parameter/567899.rdf
Name: ISO_DateTime_UTC
Units: unknown
Description: <p>UTC time; ISO formatted,yyyy-mm-ddTHH:MM:SS[.xx]</p>
http://lod.bco-dmo.org/id/dataset-parameter/567901.rdf
Name: time_UTC
Units: unknown
Description: <p>UTC time; formatted as HHMM</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
8489937
https://datadocs.bco-dmo.org/file/A88rLynuqQQvG/ADCP_FSBT.csv
ADCP_FSBT.csv
Primary data file for dataset ID 566880
download
https://osprey.bco-dmo.org/dataset/566880/data/download
download
onLine
dataset
<p><strong>BCO-DMO Processing:</strong></p>
<p>- added conventional header with dataset name, PI name, version date<br />
- renamed parameters to BCO-DMO standard<br />
- created toplevel file to serve individual files as a single object<br />
- added cruise_name, cruise_id</p>
<p><strong>Versions:</strong><br />
- v2: 2015-09-21: added ISO_DateTime_UTC and time_UTC columns<br />
- v1: 2015-09-14: served data</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
ADCP
ADCP
PI Supplied Instrument Name: ADCP PI Supplied Instrument Description:TRDI Workhorse sentinel 1200 KHz, with mode 12 (high ping rate) Instrument Name: Acoustic Doppler Current Profiler Instrument Short Name:ADCP Instrument Description: The ADCP measures water currents with sound, using a principle of sound waves called the Doppler effect. A sound wave has a higher frequency, or pitch, when it moves to you than when it moves away. You hear the Doppler effect in action when a car speeds past with a characteristic building of sound that fades when the car passes. The ADCP works by transmitting "pings" of sound at a constant frequency into the water. (The pings are so highly pitched that humans and even dolphins can't hear them.) As the sound waves travel, they ricochet off particles suspended in the moving water, and reflect back to the instrument. Due to the Doppler effect, sound waves bounced back from a particle moving away from the profiler have a slightly lowered frequency when they return. Particles moving toward the instrument send back higher frequency waves. The difference in frequency between the waves the profiler sends out and the waves it receives is called the Doppler shift. The instrument uses this shift to calculate how fast the particle and the water around it are moving. Sound waves that hit particles far from the profiler take longer to come back than waves that strike close by. By measuring the time it takes for the waves to bounce back and the Doppler shift, the profiler can measure current speed at many different depths with each series of pings. (More from WHOI instruments listing). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/115/
Cruise: HRS110714EN
HRS110714EN
R/V Hugh R. Sharp
Community Standard Description
International Council for the Exploration of the Sea
R/V Hugh R. Sharp
vessel
HRS110714EN
Elizabeth North
University of Maryland Center for Environmental Science
http://dmoserv3.bco-dmo.org/data_docs/TRANSPORT/2011cruise_reports/TRANSPORT_Cruise_Report_FSBT11.pdf
Report describing HRS110714EN
Cruise: HRS120711EN
HRS120711EN
R/V Hugh R. Sharp
Community Standard Description
International Council for the Exploration of the Sea
R/V Hugh R. Sharp
vessel
HRS120711EN
Elizabeth North
University of Maryland Center for Environmental Science
http://dmoserv3.bco-dmo.org/data_docs/TRANSPORT/2012cruise_reports/TRANSPORT_Cruise_Report_FSBT12.pdf
Report describing HRS120711EN
R/V Hugh R. Sharp
Community Standard Description
International Council for the Exploration of the Sea
R/V Hugh R. Sharp
vessel