http://lod.bco-dmo.org/id/dataset/627968
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-12-01
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Copepod nauplius appendage measurements collected during escape response University of Hawaii at Manoa in 2015 (PreyEscape project)
2015-12-15
publication
2015-12-15
revision
BCO-DMO Linked Data URI
2015-12-15
creation
http://lod.bco-dmo.org/id/dataset/627968
Petra H. Lenz
University of Hawaiʻi at Mānoa
principalInvestigator
Daniel K. Hartline
University of Hawaiʻi at Mānoa
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Lenz, P. H., Hartline, D. K. (2015) Copepod nauplius appendage measurements collected during escape response University of Hawaii at Manoa in 2015 (PreyEscape project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2015-12-15) Version Date 2015-12-15 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/627968 [access date]
Copepod nauplius appendage measurements during escape response Dataset Description: <p>High-resolution measurement of body displacement and angular position of individual appendages during escape swims of nauplii of the calanoid copepod, <em>Bestiolina similis.</em></p>
<p><strong>Related Reference:</strong></p>
<p>Lenz, P.H., Takagi, D. and Hartline, D.K.&nbsp; 2015.&nbsp; Choreographed swimming of copepod nauplii.&nbsp; J. Royal Society Interface 12: 20150776.</p> Methods and Sampling: <p>Spontaneous escape swims were recorded at 5000 fps with an Olympus Industrial i-SPEED high-speed camera at 10x magnification through an inverted microscope (Olympus IX70).&nbsp;&nbsp; See publication for additional details.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1235549 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1235549
completed
Petra H. Lenz
University of Hawaiʻi at Mānoa
808-956-8003
Pacific Biosciences Research Center (PBRC), Bekesy Laboratory of Neurobiology 1993 East-West Road
Honolulu
HI
96822
United States
petra@hawaii.edu
pointOfContact
Daniel K. Hartline
University of Hawaiʻi at Mānoa
808-956-8003
Pacific Biosciences Research Center 1993 East-West Rd.
Honolulu
HI
96822
USA
danh@pbrc.hawaii.edu
pointOfContact
asNeeded
Dataset Version: 2015-12-15
Unknown
meas_num
x_axis
y_axis
image_frame
time_elapsed
A1_angle
A2_angle
mand_angle
distance
theme
None, User defined
sample identification
xpos
ypos
No BCO-DMO term
time_elapsed
angle
featureType
BCO-DMO Standard Parameters
Camera
Microscope - Optical
instrument
BCO-DMO Standard Instruments
Naup_2015
service
Deployment Activity
University of Hawaii at Manoa lab
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
The Drive to Survive: Copepods vs Ichthyoplankton
https://osprey.bco-dmo.org/project/562097
The Drive to Survive: Copepods vs Ichthyoplankton
<p><em>Description from NSF award abstract:</em><br />
This study will experimentally elucidate the dynamics of predator evasion by different species and life stages of copepod responding to a model larval fish predator. The PIs will use standard and high-speed videographic and cutting-edge holographic techniques. Predator-prey interactions within planktonic communities are key to understanding how energy is transferred within complex marine food webs. Of particular interest are those between the highly numerous copepods and one of their more important predators, the ichthyoplankton (the planktonic larval stages of fishes). The larvae of most fishes are planktivorous and heavily dependent on copepods for food. In general, evasion success increases with age in copepods and decreases with the age of the fish predator. How this plays out in detail is critical in determining predatory attack outcomes and the effect these have on predator and prey survival. To address this problem, different copepod developmental stages will be tested against several levels of predator competence, and the results examined for: 1) the success or failure of attacks for different combinations of predator and prey age class; 2) the kinematics (reaction latencies and trajectory orientation) for escape attempts, successful and unsuccessful, for different age classes of copepod; 3) the hydrodynamic cues generated by different ages and attack strategies of the predator and the sensitivity of different prey stages to these cues; and 4) the success or failure of the predatory approach and attack strategies at each prey stage. The data obtained will be used to inform key issues of zooplankton population dynamics. For the prey these include: predator-evasion capabilities and importance of detection ability, reaction speed, escape speed, escape orientation, and trajectory irregularity; for the predator they are: capabilities and importance of mouth gape size, stealthiness, hydrodynamic disturbance production, and lunge kinematics.</p>
PreyEscape
largerWorkCitation
project
eng; USA
biota
oceans
University of Hawaii at Manoa lab
2015-12-15
Pacific
0
BCO-DMO catalogue of parameters from Copepod nauplius appendage measurements collected during escape response University of Hawaii at Manoa in 2015 (PreyEscape project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/627978.rdf
Name: meas_num
Units: unitless
Description: <p>Measurement number made in the data series. Not all start from 0 since the start time was normalized across data files.</p>
http://lod.bco-dmo.org/id/dataset-parameter/627979.rdf
Name: x_axis
Units: millimeters
Description: <p>X-axis measurement in mm in relation to the top left corner of the image where x=0 and y=0.</p>
http://lod.bco-dmo.org/id/dataset-parameter/627980.rdf
Name: y_axis
Units: millimeters
Description: <p>Y-axis measurement in mm in relation to the top left corner of the image where x=0 and y=0.</p>
http://lod.bco-dmo.org/id/dataset-parameter/627981.rdf
Name: image_frame
Units: unitless
Description: <p>refers to the image number after converted from the video that capture the swim episode at 5000 fps.</p>
http://lod.bco-dmo.org/id/dataset-parameter/627982.rdf
Name: time_elapsed
Units: milliseconds
Description: <p>Time in ms set to 0 at the beginning of the measured sequence and is given as increments of 0.2 ms computed from video recording speed (5000 fps) .</p>
http://lod.bco-dmo.org/id/dataset-parameter/627983.rdf
Name: A1_angle
Units: degrees
Description: <p>Angular measurement of first antenna with respect to main body axis in degrees.</p>
http://lod.bco-dmo.org/id/dataset-parameter/627984.rdf
Name: A2_angle
Units: degrees
Description: <p>Angular measurement of second antenna with respect to main body axis in degrees.</p>
http://lod.bco-dmo.org/id/dataset-parameter/627985.rdf
Name: mand_angle
Units: degrees
Description: <p>Angular measurement of mandible with respect to main body axis in degrees.</p>
http://lod.bco-dmo.org/id/dataset-parameter/627986.rdf
Name: distance
Units: millimeters
Description: <p>Computed displacement of nauplius in mm using Pythagorean theorem</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
35855
https://datadocs.bco-dmo.org/file/WWW1E2zSjlwLXy/prey_escape.csv
prey_escape.csv
Primary data file for dataset ID 627968
download
https://osprey.bco-dmo.org/dataset/627968/data/download
download
onLine
dataset
<p>Spontaneous escape swims were recorded at 5000 fps with an Olympus Industrial i-SPEED high-speed camera at 10x magnification through an inverted microscope (Olympus IX70).&nbsp;&nbsp; See publication for additional details.</p>
Specified by the Principal Investigator(s)
<p>Each video image in a swim sequence was converted into a bitmap (tiff format) and analyzed using ImageJ (Wayne Rasband rsbweb.nih.gov/ij/).&nbsp;&nbsp; Distance traveled from the initial rest point was calculate using Pythagorean theorem using X0, Xt and Y0, Yt coordinates.&nbsp; See publication for additional details.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: PI Supplied Instrument Description:Olympus Industrial i-SPEED high-speed camera Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/
PI Supplied Instrument Name: PI Supplied Instrument Description:Inverted microscope (Olympus IX70) Instrument Name: Microscope - Optical Instrument Short Name: Instrument Description: Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope". Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB05/
Deployment: Naup_2015
Naup_2015
Lenz_lab
laboratory
Naup_2015
Petra H. Lenz
University of Hawaiʻi at Mānoa
Lenz_lab
laboratory