http://lod.bco-dmo.org/id/dataset/630041
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-12-22
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Accession numbers and characteristics of 33 microsatellite loci developed for Gracilaria vermiculophylla
2015-12-22
publication
2015-12-22
revision
BCO-DMO Linked Data URI
2015-12-22
creation
http://lod.bco-dmo.org/id/dataset/630041
James E. Byers
University of Georgia
principalInvestigator
Erik Sotka
College of Charleston
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Sotka, E., Byers, J. E. (2015) Accession numbers and characteristics of 33 microsatellite loci developed for Gracilaria vermiculophylla. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 22 December 2015) Version Date 2015-12-22 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/630041 [access date]
Accession numbers and characteristics of 33 microsatellite loci developed for Gracilaria vermiculophylla. Dataset Description: <p>This is a supplemental file (PeerJ_TableS1.docx)&nbsp;of the manuscript:<br />
Kollars, N. M., S. a. Krueger-Hadfield, J. E. Byers, T. W. Greig, A. E. Strand, F. Weinberger, and E. E. Sotka. 2015. Development and characterization of microsatellite loci for the haploid–diploid red seaweed Gracilaria vermiculophylla. PeerJ 3:e1159. doi: <a href="https://dx.doi.org/10.7717/peerj.1159" target="_blank">10.7717/peerj.1159</a></p>
<p>Related supplemental files:<br />
<a href="http://dmoserv3.whoi.edu/data_docs/Gracilaria_effects/PeerJ_TableS2.pdf" target="_blank">Table S2</a>: Null allele frequencies for the microsatellite loci developed for <em>Gracilaria vermiculophylla</em>. Frequencies were directly estimated in the haploid subpopulations, whereas frequencies in each of the diploid subpopulations at Akkeshi, Elkhorn Slough, Fort Johnson and Nordstrand were calculated using maximum likelihood and the software MLNullFreq.</p>
<p><a href="http://dmoserv3.whoi.edu/data_docs/Gracilaria_effects/PeerJ_TableS3.pdf" target="_blank">Table S3</a>:&nbsp;Short allele dominance analysis for microsatellite loci developed for <em>Gracilaria vermiculophylla</em> including number of pooled size classes used in regression analysis (following Wattier <em>et al. </em>1998), <em>No. of classes</em>, and linear regression statistics. Loci Gverm_10367 and Gverm_2790 only exhibited two alleles in our sampled populations and consequently, short allele dominance analysis was not applicable (NA).&nbsp;</p>
<p><a href="http://dmoserv3.whoi.edu/data_docs/Gracilaria_effects/PeerJ_TableS4.pdf" target="_blank">Table S4</a>:&nbsp;Linkage disequilibrium analysis for microsatellite loci developed for <em>Gracilaria vermiculophylla</em>. Darkened cells indicate pairs of loci that show significant linkage disequilibrium after Bonferroni correction (<em>p</em>-value threshold &lt; 0.006 at α = 0.05).</p>
<p><a href="http://dmoserv3.whoi.edu/data_docs/Gracilaria_effects/PeerJ_TableS5.pdf" target="_blank">Table S5</a>:&nbsp;Genetic features per locus of four populations of <em>Gracilaria vermiculophylla</em>, including: number of alleles at each locus, <em>N<sub>A</sub></em>, <u>+</u> standard error (SE); mean allelic richness, <em>A<sub>E</sub></em>, based on the smallest global sample size of 46 alleles (23 diploid individuals) <u>+</u> SE; mean observed heterozygosity, <em>H<sub>O</sub></em>, <u>+</u> SE; mean expected heterozygosity, <em>H<sub>E</sub></em>, <u>+</u> SE.&nbsp;</p>
<p><a href="http://www.bco-dmo.org/dataset/629302" target="_blank">Red Invasive Seaweed - Raw Genotypes</a> (PeerJ_genotype_data.xlsx)</p> Methods and Sampling:
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1057707 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1057707
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1057713 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1057713
completed
James E. Byers
University of Georgia
706-583-0012
Odum School of Ecology 140 E. Green St.
Athens
GA
30602
USA
jebyers@uga.edu
pointOfContact
Erik Sotka
College of Charleston
843-953-9191
Grice Marine Laboratory 205 Fort Johnson Road
Charleston
SC
29412
USA
SotkaE@cofc.edu
pointOfContact
asNeeded
Dataset Version: 22 December 2015
Unknown
locus
accession_num
motif
primer_sequence
profile
accession_URL
theme
None, User defined
No BCO-DMO term
accession number
featureType
BCO-DMO Standard Parameters
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Cascading effects of an invasive seaweed on estuarine food webs of the southeastern US
https://osprey.bco-dmo.org/project/564687
Cascading effects of an invasive seaweed on estuarine food webs of the southeastern US
<p><em>Description from NSF award abstract:</em><br />
During the last decade, the Asian seaweed, <em>Gracilaria vermiculophylla</em>, has proliferated along high-salinity mudflats in several Georgia and South Carolina estuaries. The invasion is noteworthy because the mudflats in these estuaries were historically devoid of macrophyte-based primary production and structure. <em>Gracilaria</em> has few native analogues in these mudflat environments, and thus represents an opportunity to examine the ecosystem consequences of an invasion within an historically-unexploited niche. In theory, <em>Gracilaria</em> affects populations of species that are directly dependent on the invader for structure and food, as well as altering community- and ecosystem-level processes such as detrital production and food web structure. Through a combination of manipulative field experiments, laboratory assays and stable isotope analysis, the investigators will test three mechanisms by which <em>Gracilaria</em> influences native community structure. The novel structure and primary production generated by <em>Gracilaria vermiculophylla</em> may be 1) increasing rates of secondary production, 2) increasing levels of mudflat microbial production through leeching of dissolved nutrients, and 3) increasing detrital input to microbial and macrobial food webs.</p>
<p>This project will provide a mechanistic understanding of the multiple cascading impacts of an invasive species within the estuarine community. Species invasions that alter ecosystem functions are usually the most profound. These alterations are often generated by a small number of invaders that create physical structure, including important biogenic habitat, de novo. By altering physical structure, these non-native ecosystem engineers alter local abiotic conditions, interactions between species, and species composition. Highly influential invaders may also change food web structure and trophic flow of energy and materials. Such substantive food web changes can occur when an influential invader provides nutrients or resources that are different in quality, quantity or both. An invasive species that both provisions new physical structure and fundamentally alters food web structure could exert an overwhelming influence on native communities when these mechanisms act in synergy.</p>
Gracilaria effects
largerWorkCitation
project
eng; USA
biota
oceans
2015-12-22
Georgia and South Carolina coasts
0
BCO-DMO catalogue of parameters from Accession numbers and characteristics of 33 microsatellite loci developed for Gracilaria vermiculophylla
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/630048.rdf
Name: locus
Units: dimensionless
Description: <p>Locus identifier.</p>
http://lod.bco-dmo.org/id/dataset-parameter/630049.rdf
Name: accession_num
Units: dimensionless
Description: <p>Genbank accession number.</p>
http://lod.bco-dmo.org/id/dataset-parameter/630050.rdf
Name: motif
Units: dimensionless
Description: <p>Sequence motif.</p>
http://lod.bco-dmo.org/id/dataset-parameter/630051.rdf
Name: primer_sequence
Units: dimensionless
Description: <p>Primer sequences.</p>
http://lod.bco-dmo.org/id/dataset-parameter/630052.rdf
Name: profile
Units: dimensionless
Description: <p>One- or multi- locus genetic determinism. "no amp." indicates non-amplification.</p>
http://lod.bco-dmo.org/id/dataset-parameter/630053.rdf
Name: accession_URL
Units: dimensionless
Description: <p>Hyperlink to Genbank for the accession number.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
9951
https://datadocs.bco-dmo.org/file/WWW1E2yu60MRP3/accession_numbers.csv
accession_numbers.csv
Primary data file for dataset ID 630041
download
https://osprey.bco-dmo.org/dataset/630041/data/download
download
onLine
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact