http://lod.bco-dmo.org/id/dataset/630054
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2015-12-23
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Limpet mass and body volume data for respiration measurements from samples collected in Rocky intertidal zone near Hopkins Marine Station in 2013 (Experiments in a Model Ecosystem project)
2016-01-12
publication
2016-01-12
revision
BCO-DMO Linked Data URI
2016-01-12
creation
http://lod.bco-dmo.org/id/dataset/630054
Dr Mark W Denny
Stanford University - Hopkins
principalInvestigator
Dr Bengt J Allen
California State University Long Beach
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Denny, M. W., Allen, B. J. (2016) Limpet mass and body volume data for respiration measurements from samples collected in Rocky intertidal zone near Hopkins Marine Station in 2013 (Experiments in a Model Ecosystem project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2016-01-12) Version Date 2016-01-12 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/630054 [access date]
Limpet mass and body volume data for respiration measurements Dataset Description: <p>Growth data for animals on experimental plates in the field during 2013 was collected monthly via digital photographs and measured using ImageJ software. Respiration of limpets collected from the field during summer 2013 was measured in air or seawater at a range of temperatures for one hour or two hours.</p>
<p><strong>Related Reference:</strong></p>
<p>Miller, L.P., B.J. Allen, F.A. King, D.R. Chilin, V.M. Reynoso and M.W. Denny (2015). Warm microhabitats drive both increased respiration and growth rates of intertidal consumers. Marine Ecology Progress Series 522: 127-143 doi: <a href="http://dx.doi.org/10.3354/meps11117">http://dx.doi.org/10.3354/meps11117</a></p>
<p><strong>Download R code: </strong><a href="http://dmoserv3.bco-dmo.org/data/allen_bengt/Expts_Model_Ecosystem/2013_limpet_mass_analysis.R">2013_limpet_mass_analysis.R</a></p>
<table border="1" cellpadding="1" cellspacing="1">
<tbody>
<tr>
<td><strong>Related Datasets</strong> (includes metadata)</td>
<td><strong>Download original data files</strong></td>
</tr>
<tr>
<td><a href="http://www.bco-dmo.org/dataset/630054" target="_blank">limpet mass and body volume</a></td>
<td><a href="http://dmoserv3.bco-dmo.org/data/allen_bengt/Expts_Model_Ecosystem/2013_limpet_mass_master.csv">2013_limpet_mass_master.csv</a></td>
</tr>
<tr>
<td><a href="http://www.bco-dmo.org/dataset/630089" target="_blank">limpet aquatic respiration</a></td>
<td><a href="http://dmoserv3.bco-dmo.org/data/allen_bengt/Expts_Model_Ecosystem/2013_summer_aquatic_respiration_rates.csv">2013_summer_aquatic_respiration_rates.csv</a></td>
</tr>
<tr>
<td><a href="http://www.bco-dmo.org/dataset/630116" target="_blank">limpet aerial respiration</a></td>
<td><a href="http://dmoserv3.bco-dmo.org/data/allen_bengt/Expts_Model_Ecosystem/2013_summer_aerial_respiration_rates.csv">2013_summer_aerial_respiration_rates.csv</a></td>
</tr>
</tbody>
</table>
<p>These data are also available at the Stanford Digital Repository: <a href="https://purl.stanford.edu/mz343tz6255">https://purl.stanford.edu/mz343tz6255</a></p> Methods and Sampling: <p>Oxygen measurements taken using Ocean Optics FOXY fluorescence-based optode. Limpet mass data for all measured animals is included. Detailed methodology is available in Miller et al (2015).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1131038 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1131038
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1130095 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1130095
completed
Dr Mark W Denny
Stanford University - Hopkins
831-655-6207
Hopkins Marine Station 120 Ocean View Blvd.
Pacific Grove
CA
93950
USA
mwdenny@stanford.edu
pointOfContact
Dr Bengt J Allen
California State University Long Beach
562-985-7553
Department of Biological Sciences 1250 Bellflower Blvd.
Long Beach
CA
90840
USA
bengt.allen@csulb.edu
pointOfContact
asNeeded
Dataset Version: 2016-01-12
Unknown
air_water
species
temp
limpet
mass_submerged_g
mass_air_g
mass_empty_shell_g
mass_tin_tare_g
mass_dry_gross_g
image_id
mass_tissue_live_g
mass_net_dry_tissue_g
mass_net_disp_g
vol_limpet_cm3
area_shell_mm2
date_collection
date_trial
comment
theme
None, User defined
No BCO-DMO term
species scientific name (binomial)
water temperature at measurement depth
sample identification
weight
disp_vol
date
comments
featureType
BCO-DMO Standard Parameters
Water Temperature Sensor
instrument
BCO-DMO Standard Instruments
Denny_2013
service
Deployment Activity
Rocky intertidal zone; Hopkins Marine Station, Pacific Grove, CA USA
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Environmental Variability, Functional Redundancy, and the Maintenance of Ecological Processes: Experiments in a Model Ecosystem
https://osprey.bco-dmo.org/project/489340
Environmental Variability, Functional Redundancy, and the Maintenance of Ecological Processes: Experiments in a Model Ecosystem
<p><em>From NSF award abstract:</em><br />
Functional traits of species are those that determine either species-specific responses to environmental conditions or their influence on ecological processes. Current theory suggests that communities with many species that perform a given function in a similar way but have different sensitivities to environmental conditions will exhibit greater temporal stability of ecosystem properties. So-called functional redundancy should lead to compensation among species, as some will do better when others do worse in response to environmental variability. Anthropogenic global warming is a major driver of current and anticipated changes in population dynamics, species interactions, and community structure from local to global scales. Resulting changes in biodiversity therefore have the potential to significantly alter important ecosystem properties such as productivity, nutrient cycling, and resistance to disturbance or invasion. Although ecologists have typically emphasized the response of populations and communities to changing climatic averages (e.g., increasing temperature and rainfall), global circulation models also predict significant increases in the intensity, frequency and duration of extreme weather and climate events in many parts of the world; that is, increases in the variability of the physical environment. Unfortunately, our current knowledge about the effects of increasing climatic variation on natural ecosystems is generally quite poor. Predicting how communities will likely respond to changing environmental variability has therefore been recognized as a critical research priority.</p>
<p>This project will advance our understanding of how projected changes in temperature variability will affect the behavior, demography, and interactions of key taxa on rocky shores, a model system for testing theoretical ecological predictions with field experiments. Environmental temperatures strongly influence the physiology, behavior, and demography of most organisms, and changes in average temperature have already been implicated in geographic range shifts of many species. A novel manipulative technique will be used to test the effects of changes in thermal variability on performance by a guild of congeneric grazing limpets, the productivity of their benthic microalgal food, and the resulting interaction strengths between the two taxa. Energy transfer among trophic levels is a key ecosystem process linked to local food-web support and rates of nutrient cycling. This research will evaluate not only species-specific effects of thermal variability on limpet survival, growth, and grazing activity, but also the potential for functional redundancy among limpet species to maintain that ecosystem function over time as environmental variability increases. Data generated from this study will provide a framework for future investigations of the consequences of climate change in this diverse and productive habitat.</p>
Experiments in a Model Ecosystem
largerWorkCitation
project
eng; USA
biota
oceans
Rocky intertidal zone; Hopkins Marine Station, Pacific Grove, CA USA
2016-01-12
Rocky intertidal zone; Hopkins Marine Station, Pacific Grove, CA USA
0
BCO-DMO catalogue of parameters from Limpet mass and body volume data for respiration measurements from samples collected in Rocky intertidal zone near Hopkins Marine Station in 2013 (Experiments in a Model Ecosystem project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/632603.rdf
Name: air_water
Units: unitless
Description: <p>whether respiration trial was run in air or water (Reminder that many limpets in this data file were run as pilot trials and not included in the published analysis.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/632604.rdf
Name: species
Units: unitless
Description: <p>Lottia species name</p>
http://lod.bco-dmo.org/id/dataset-parameter/632605.rdf
Name: temp
Units: degrees Celsius
Description: <p>temperature of respiration trial</p>
http://lod.bco-dmo.org/id/dataset-parameter/632606.rdf
Name: limpet
Units: unitless
Description: <p>unique identifying label for each limpet consisting of a 3-character species name abbreviation and a 3 or 4 digit number: lim = Lottia limatula; dig = L. austrodigitalis; sca = L. scabra; pel = L. pelta</p>
http://lod.bco-dmo.org/id/dataset-parameter/632607.rdf
Name: mass_submerged_g
Units: grams
Description: <p>mass of the submerged live limpet in seawater; used for calculation of volume</p>
http://lod.bco-dmo.org/id/dataset-parameter/632608.rdf
Name: mass_air_g
Units: grams
Description: <p>wet mass of live limpet (shell + tissue)</p>
http://lod.bco-dmo.org/id/dataset-parameter/632609.rdf
Name: mass_empty_shell_g
Units: grams
Description: <p>dry mass of empty limpet shell</p>
http://lod.bco-dmo.org/id/dataset-parameter/632610.rdf
Name: mass_tin_tare_g
Units: grams
Description: <p>mass of tin foil weighing dish; used for drying tissue</p>
http://lod.bco-dmo.org/id/dataset-parameter/632611.rdf
Name: mass_dry_gross_g
Units: grams
Description: <p>mass of tin foil dish and dried tissue</p>
http://lod.bco-dmo.org/id/dataset-parameter/632612.rdf
Name: image_id
Units: unitless
Description: <p>corresponding image name for limpet shell (used to calculate projected area of shell)</p>
http://lod.bco-dmo.org/id/dataset-parameter/632613.rdf
Name: mass_tissue_live_g
Units: grams
Description: <p>wet tissue mass; calculated as difference between mass_air_g and mass_empty_shell_g</p>
http://lod.bco-dmo.org/id/dataset-parameter/632614.rdf
Name: mass_net_dry_tissue_g
Units: grams
Description: <p>dried tissue mass; calculated as difference between mass_dry_gross_g and mass_tin_tare_g</p>
http://lod.bco-dmo.org/id/dataset-parameter/632615.rdf
Name: mass_net_disp_g
Units: grams
Description: <p>net displaced mass; calculated as the difference betweenmass_air_g and mass_submerged_g</p>
http://lod.bco-dmo.org/id/dataset-parameter/632616.rdf
Name: vol_limpet_cm3
Units: cm^3
Description: <p>limpet displaced volume; calculated as mass_net_disp_g * 1.0247 (density of local seawater at 15C = 1.0247 g/cm^3).</p>
http://lod.bco-dmo.org/id/dataset-parameter/632617.rdf
Name: area_shell_mm2
Units: mm^2
Description: <p>projected area of limpet shell when viewed from above; measured using the digital image of the shell in ImageJ by painting the outline of the shell and calculating the enclosed area. This same method was used to estimate limpet growth in the field using digital images taken from overhead.</p>
http://lod.bco-dmo.org/id/dataset-parameter/632618.rdf
Name: date_collection
Units: mm/dd/yyyy
Description: <p>date that limpet was collected from the field</p>
http://lod.bco-dmo.org/id/dataset-parameter/632619.rdf
Name: date_trial
Units: mm/dd/yyyy
Description: <p>date of respiration measurements</p>
http://lod.bco-dmo.org/id/dataset-parameter/632620.rdf
Name: comment
Units: unitless
Description: <p>lists whether limpet shell was intact or chipped. Chipped shells should not be used to calculate the relationship between limpet mass and projected area measured in overhead images.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
128745
https://datadocs.bco-dmo.org/file/wnnxNP4Cgyo99Z/limpet_mass_sort.csv
limpet_mass_sort.csv
Primary data file for dataset ID 630054
download
https://osprey.bco-dmo.org/dataset/630054/data/download
download
onLine
dataset
<p>Oxygen measurements taken using Ocean Optics FOXY fluorescence-based optode. Limpet mass data for all measured animals is included. Detailed methodology is available in Miller et al (2015).</p>
Specified by the Principal Investigator(s)
<p>Growth measurements were made by analyzing limpet shell projected area in ImageJ. Limpet respiration time series were used to estimate oxygen consumption rate. Complete analysis for size measurements and derived respiration rates are provided in the attached R code.</p>
<p><strong>BCO-DMO Processing:</strong></p>
<p>- added conventional header with dataset name, PI name, version date<br />
- renamed parameters to BCO-DMO standard<br />
- replaced NA with nd (no data)<br />
- replaced spaces with underscores<br />
- sorted data by air_water, then species, then temp</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: PI Supplied Instrument Description:iButton temperature datalogger (DS1921G, Maxim Integrated) Instrument Name: Water Temperature Sensor Instrument Short Name:Water Temp Sensor Instrument Description: General term for an instrument that measures the temperature of the water with which it is in contact (thermometer). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/134/
Deployment: Denny_2013
Denny_2013
Hopkins Marine Station
laboratory
Denny_2013
Dr Mark W Denny
Stanford University - Hopkins
Hopkins Marine Station
laboratory