<div><p>Oxygen measurements taken using Ocean Optics FOXY fluorescence-based optode. Limpet mass data for all measured animals is included. Detailed methodology is available in Miller et al (2015).</p></div>
Respiration chamber images and R-code for analysis of size measurements and derived respiration rates
<div><p>This dataset provides links to images of the respiration chamber used in the other datasets for this project and also an example of the R-code used to analyze the limpet mass and body volume data.</p>
<p>Growth data for animals on experimental plates in the field during 2013 was collected monthly via digital photographs and measured using ImageJ software. Respiration of limpets collected from the field during summer 2013 was measured in air or seawater at a range of temperatures for one hour or two hours.</p>
<p><strong>Related Reference:</strong></p>
<p>Miller, L.P., B.J. Allen, F.A. King, D.R. Chilin, V.M. Reynoso and M.W. Denny (2015). Warm microhabitats drive both increased respiration and growth rates of intertidal consumers. Marine Ecology Progress Series 522: 127-143 doi: <a href="http://dx.doi.org/10.3354/meps11117">http://dx.doi.org/10.3354/meps11117</a></p>
<p>These data are also available at the Stanford Digital Repository: <a href="https://purl.stanford.edu/mz343tz6255">https://purl.stanford.edu/mz343tz6255</a></p>
<p><strong>Download R code: </strong><a href="/objectserver/be0f3d3c58584e2b79baf4ca9d39130f/2013_limpet_mass_analysis.R?url=http%3A%2F%2Fdmoserv3.bco-dmo.org%2Fdata%2Fallen_bengt%2FExpts_Model_Ecosystem%2F2013_limpet_mass_analysis.R&f=6262626661643163653463613230643964386236636439336661656136616136687474703a2f2f646d6f73657276332e62636f2d646d6f2e6f72672f646174612f616c6c656e5f62656e67742f45787074735f4d6f64656c5f45636f73797374656d2f323031335f6c696d7065745f6d6173735f616e616c797369732e52">2013_limpet_mass_analysis.R</a></p>
<table border="1" cellpadding="1" cellspacing="1" style="width:500px"><tbody><tr><td><strong>Related Datasets</strong> (includes metadata)</td>
<td><strong>Download original data files</strong></td>
</tr><tr><td><a href="http://www.bco-dmo.org/dataset/630054" style="line-height: 18.9091px;" target="_blank">limpet mass and body volume</a></td>
<td><a href="/objectserver/c9018b68d895c07fc8ee66f7625abf54/2013_limpet_mass_master.csv?url=http%3A%2F%2Fdmoserv3.bco-dmo.org%2Fdata%2Fallen_bengt%2FExpts_Model_Ecosystem%2F2013_limpet_mass_master.csv&f=3865336233656232633531633932303339613263383439663966363138623362687474703a2f2f646d6f73657276332e62636f2d646d6f2e6f72672f646174612f616c6c656e5f62656e67742f45787074735f4d6f64656c5f45636f73797374656d2f323031335f6c696d7065745f6d6173735f6d61737465722e637376" style="line-height: 18.9091px;">2013_limpet_mass_master.csv</a></td>
</tr><tr><td><a href="http://www.bco-dmo.org/dataset/630089" style="line-height: 18.9091px;" target="_blank">limpet aquatic respiration</a></td>
<td><a href="/objectserver/755a438b7e92c9555ccbdda283fb286c/2013_summer_aquatic_respiration_rates.csv?url=http%3A%2F%2Fdmoserv3.bco-dmo.org%2Fdata%2Fallen_bengt%2FExpts_Model_Ecosystem%2F2013_summer_aquatic_respiration_rates.csv&f=3365653265633936623262636162653037376238306332336436356138633233687474703a2f2f646d6f73657276332e62636f2d646d6f2e6f72672f646174612f616c6c656e5f62656e67742f45787074735f4d6f64656c5f45636f73797374656d2f323031335f73756d6d65725f617175617469635f7265737069726174696f6e5f72617465732e637376" style="line-height: 18.9091px;">2013_summer_aquatic_respiration_rates.csv</a></td>
</tr><tr><td><a href="http://www.bco-dmo.org/dataset/630116" style="line-height: 18.9091px;" target="_blank">limpet aerial respiration</a></td>
<td><a href="/objectserver/acdff83f6aa43917db78fbb67a87b47e/2013_summer_aerial_respiration_rates.csv?url=http%3A%2F%2Fdmoserv3.bco-dmo.org%2Fdata%2Fallen_bengt%2FExpts_Model_Ecosystem%2F2013_summer_aerial_respiration_rates.csv&f=6361336239623032646534383434323061343361636265336330613236656565687474703a2f2f646d6f73657276332e62636f2d646d6f2e6f72672f646174612f616c6c656e5f62656e67742f45787074735f4d6f64656c5f45636f73797374656d2f323031335f73756d6d65725f61657269616c5f7265737069726174696f6e5f72617465732e637376" style="line-height: 18.9091px;">2013_summer_aerial_respiration_rates.csv</a></td>
</tr></tbody></table><p> </p></div>
limpet R-code and images
<div><p>Growth measurements were made by analyzing limpet shell projected area in ImageJ. Limpet respiration time series were used to estimate oxygen consumption rate. Complete analysis for size measurements and derived respiration rates are provided in the attached R code.</p></div>
630140
limpet R-code and images
2015-12-23T15:02:00-05:00
2015-12-23T15:02:00-05:00
2023-07-07T16:10:26-04:00
urn:bcodmo:dataset:630140
Respiration chamber images and R-code for analysis of size measurements and derived respiration rates from experiments conducted at Hopkins Marine Station in 2013 (Experiments in a Model Ecosystem project)
false
Denny, M. W., Allen, B. J. (2015) Respiration chamber images and R-code for analysis of size measurements and derived respiration rates from experiments conducted at Hopkins Marine Station in 2013 (Experiments in a Model Ecosystem project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2015-12-23) Version Date 2015-12-23 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/630140 [access date]
true
2015-12-23
false
2015-12-23
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