http://lod.bco-dmo.org/id/dataset/636127
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-01-21
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Phytoplankton nutrient traits and data sources collected from the Kellogg Biological Station, MSU, Michigan in 2014 (Phytoplankton Traits project)
2021-06-10
publication
2021-06-10
revision
BCO-DMO Linked Data URI
2021-06-10
creation
http://lod.bco-dmo.org/id/dataset/636127
Elena Litchman
Michigan State University
principalInvestigator
Kyle F. Edwards
University of Hawaiʻi at Mānoa
principalInvestigator
Christopher Klausmeier
Michigan State University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Litchman, E., Klausmeier, C., Edwards, K. F. (2021) Phytoplankton nutrient traits and data sources collected from the Kellogg Biological Station, MSU, Michigan in 2014 (Phytoplankton Traits project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2021-06-10 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/636127 [access date]
Phytoplankton nutrient traits and data sources Dataset Description: <p>This dataset combines Tables 1 and 2 from Edwards et al (2015) Ecology. Cell volume measurements for nearly all species in the nutrient trait data set is also available, see <a href="http://www.bco-dmo.org/dataset/636302" target="_blank">Table 3</a>. Nutrient utilization traits. Each row presents a single species/strain from one publication. If multiple traits were measured on that strain in that publication, they are all listed in the same row. If the same strain was tested at multiple temperatures, the measurements from each temperature are recorded in different rows. Temperature of the experiment, irradiance, day length, taxon, system (freshwater/marine), isolate ID, cell volume, C per cell, and citation source are all included as well.</p>
<p>These data were obtained from <a href="http://www.esapubs.org/archive" target="_blank">http://www.esapubs.org/archive</a> on 2016-01-21.</p>
<p><a href="http://dmoserv3.bco-dmo.org/data_docs/Phytoplankton_Traits/Ecological_Archives_E096_metadata_2016-01-22.pdf" target="_blank">Full metadata details</a></p>
<p><strong>Related Reference:</strong></p>
<p>Kyle F. Edwards, Christopher A. Klausmeier, and Elena Litchman. 2015. Nutrient utilization traits of phytoplankton. Ecology 96:2311. http://dx.doi.org/10.1890/14-2252.1</p> Methods and Sampling: <p>Data acquisition, methodology, and criteria for inclusion:&nbsp;We comprehensively searched the literature for studies that used unialgal cultures to measure how phytoplankton growth, nutrient content, and nutrient uptake rate respond to nutrient supply. We focused on experiments using nitrate, ammonium, or phosphate as the limiting nutrient. We only compiled studies where light was not strongly limiting, and where only a single nutrient was limiting. For one diazotroph (<em>Trichodesmium</em>), the experiments compiled here did not include nitrogen in the medium.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0928819 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0928819
completed
Elena Litchman
Michigan State University
269-671-2338
3700 E Gull Lake Dr.
Hickory Corners
MI
49060
USA
litchman@msu.edu
pointOfContact
Kyle F. Edwards
University of Hawaiʻi at Mānoa
808-956-6198
Department of Oceanography 1000 Pope Road
Honolulu
HI
96822
kfe@hawaii.edu
pointOfContact
Christopher Klausmeier
Michigan State University
W. K. Kellogg Biological Station
Hickory Corners
MI
49060
USA
klausme1@msu.edu
pointOfContact
asNeeded
Dataset Version: 2
Unknown
species
isolate
taxon
system
temperature
irradiance
light_hours
synonym
volume
c_per_cell
c_citation
mu_inf_amm
mu_amm
k_amm_m
k_amm
vmax_amm
vmax_amm_c
qmin_amm
qmin_amm_c
qmax_amm
qmax_amm_c
mu_inf_nit
mu_nit
k_nit_m
k_nit
vmax_nit
vmax_nit_c
qmin_nit
qmin_nit_c
qmax_nit
qmax_nit_c
mu_inf_p
mu_p
k_p_m
k_p
vmax_p
vmax_p_c
qmin_p
qmin_p_c
qmax_p
qmax_p_c
citation_code
full_citation
theme
None, User defined
species
No BCO-DMO term
taxon
temperature of sample or a generic measurement (not in-situ water temp)
irradiance
length_day
volume
reference_paper
growth
featureType
BCO-DMO Standard Parameters
Litchman_2014
service
Deployment Activity
Kellogg Biological Station, MSU, Michigan
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Phytoplankton Traits, Functional Groups and Community Organization: A Synthesis
https://osprey.bco-dmo.org/project/543188
Phytoplankton Traits, Functional Groups and Community Organization: A Synthesis
<p><em>Description from NSF award abstract:</em><br />
Phytoplankton account for half of global primary productivity and their biomass and community composition significantly impact global carbon and other biogeochemical cycles and ecosystem functioning. Explaining patterns of global distributions of phytoplankton groups and predicting how phytoplankton communities will re-organize under anthropogenic environmental change requires knowledge of diverse eco-physiological traits defining ecological niches of phytoplankton species. In this project, the investigators will assemble a query-based database of diverse phytoplankton traits such as cell/colony size, growth rates, resource acquisition and predator avoidance traits, among others. Data for all available species and strains will be included. They will use the database to answer fundamental questions in phytoplankton ecology such as:<br />
1) what traits exhibit trade-offs (pairwise and beyond) and what shapes are they?<br />
2) What traits scale allometrically with cell/body size? Can scaling exponents from first principles be predicted? What are potential limits to allometric scaling as a way of simplifying the complex trait space that characterizes real organisms?<br />
3) What are trait differences among major functional/taxonomic groups of phytoplankton and how much does taxonomy/phylogeny constrain particular functional traits?<br />
4) Are there differences in trait distributions between marine and freshwater groups?</p>
<p>The investigators will also use the database to parameterize novel models of phytoplankton community organization and evolution based on adaptive dynamics approaches. They will use the models to explore how community structure emerges under different environmental scenarios, given physiological constraints and ecological interactions. Changes in elemental stoichiometry, size structure and functional group distributions at different spatial and temporal scales will also be examined.</p>
Phytoplankton Traits
largerWorkCitation
project
eng; USA
biota
oceans
Kellogg Biological Station, MSU, Michigan
2021-06-10
0
BCO-DMO catalogue of parameters from Phytoplankton nutrient traits and data sources collected from the Kellogg Biological Station, MSU, Michigan in 2014 (Phytoplankton Traits project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/636135.rdf
Name: species
Units: text
Description: <p>Species name</p>
http://lod.bco-dmo.org/id/dataset-parameter/636136.rdf
Name: isolate
Units: text
Description: <p>Isolate ID</p>
http://lod.bco-dmo.org/id/dataset-parameter/636137.rdf
Name: taxon
Units: text
Description: <p>Taxon name</p>
http://lod.bco-dmo.org/id/dataset-parameter/636138.rdf
Name: system
Units: text
Description: <p>Freshwater/marine</p>
http://lod.bco-dmo.org/id/dataset-parameter/636139.rdf
Name: temperature
Units: degrees Celsius
Description: <p>Culture temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/636140.rdf
Name: irradiance
Units: umol photons/m^2/s^1
Description: <p>Culture irradiance</p>
http://lod.bco-dmo.org/id/dataset-parameter/636141.rdf
Name: light_hours
Units: hr
Description: <p>Culture daylength</p>
http://lod.bco-dmo.org/id/dataset-parameter/636142.rdf
Name: synonym
Units: text
Description: <p>Former species name</p>
http://lod.bco-dmo.org/id/dataset-parameter/636143.rdf
Name: volume
Units: um3
Description: <p>Cell volume</p>
http://lod.bco-dmo.org/id/dataset-parameter/636144.rdf
Name: c_per_cell
Units: umol cell-1
Description: <p>Carbon per cell</p>
http://lod.bco-dmo.org/id/dataset-parameter/636145.rdf
Name: c_citation
Units: integer
Description: <p>C per cell citation</p>
http://lod.bco-dmo.org/id/dataset-parameter/636146.rdf
Name: mu_inf_amm
Units: day-1
Description: <p>u(infinity) for ammonium-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636147.rdf
Name: mu_amm
Units: day-1
Description: <p>umax for ammonium-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636148.rdf
Name: k_amm_m
Units: umol L-1
Description: <p>Km for ammonium-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636149.rdf
Name: k_amm
Units: umol L-1
Description: <p>K for ammonium uptake</p>
http://lod.bco-dmo.org/id/dataset-parameter/636150.rdf
Name: vmax_amm
Units: umol N cell-1 day-1
Description: <p>Vmax for ammonium uptake</p>
http://lod.bco-dmo.org/id/dataset-parameter/636151.rdf
Name: vmax_amm_c
Units: umol N umol C-1 day -1
Description: <p>Vmax:C for ammonium uptake</p>
http://lod.bco-dmo.org/id/dataset-parameter/636152.rdf
Name: qmin_amm
Units: umol N cell-1
Description: <p>Qmin for ammonium-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636153.rdf
Name: qmin_amm_c
Units: umol N umol C-1
Description: <p>Qmin:C for ammonium-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636154.rdf
Name: qmax_amm
Units: umol N cell-1
Description: <p>Qmax for ammonium-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636155.rdf
Name: qmax_amm_c
Units: umol N umol C-1
Description: <p>Qmax:C for ammonium-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636156.rdf
Name: mu_inf_nit
Units: day-1
Description: <p>u(infinity) for nitrate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636157.rdf
Name: mu_nit
Units: day-1
Description: <p>umax for nitrate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636158.rdf
Name: k_nit_m
Units: umol L-1
Description: <p>Km for nitrate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636159.rdf
Name: k_nit
Units: umol L-1
Description: <p>K for nitrate uptake</p>
http://lod.bco-dmo.org/id/dataset-parameter/636160.rdf
Name: vmax_nit
Units: umol N cell-1 day-1
Description: <p>Vmax for nitrate uptake</p>
http://lod.bco-dmo.org/id/dataset-parameter/636161.rdf
Name: vmax_nit_c
Units: umol N umol C-1 day-1
Description: <p>Vmax:C for nitrate uptake</p>
http://lod.bco-dmo.org/id/dataset-parameter/636162.rdf
Name: qmin_nit
Units: umol N cell-1
Description: <p>Qmin for nitrate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636163.rdf
Name: qmin_nit_c
Units: umol N umol C-1
Description: <p>Qmin:C for nitrate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636164.rdf
Name: qmax_nit
Units: umol N cell-1
Description: <p>Qmax for nitrate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636165.rdf
Name: qmax_nit_c
Units: umol N umol C-1
Description: <p>Qmax:C for nitrate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636166.rdf
Name: mu_inf_p
Units: day-1
Description: <p>u(infinity) for phosphate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636167.rdf
Name: mu_p
Units: day-1
Description: <p>umax for phosphate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636168.rdf
Name: k_p_m
Units: umol L-1
Description: <p>Km for phosphate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636169.rdf
Name: k_p
Units: umol L-1
Description: <p>K for phosphate uptake</p>
http://lod.bco-dmo.org/id/dataset-parameter/636170.rdf
Name: vmax_p
Units: umol P cell-1 day-1
Description: <p>Vmax for phosphate uptake</p>
http://lod.bco-dmo.org/id/dataset-parameter/636171.rdf
Name: vmax_p_c
Units: umol P umol C-1 day-1
Description: <p>Vmax:C for phosphate uptake</p>
http://lod.bco-dmo.org/id/dataset-parameter/636172.rdf
Name: qmin_p
Units: umol P cell-1
Description: <p>Qmin for phosphate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636173.rdf
Name: qmin_p_c
Units: umol P umol C-1
Description: <p>Qmin:C for phosphate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636174.rdf
Name: qmax_p
Units: umol P cell-1
Description: <p>Qmax for phosphate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636175.rdf
Name: qmax_p_c
Units: umol P umol C-1
Description: <p>Qmax:C for phosphate-limited growth</p>
http://lod.bco-dmo.org/id/dataset-parameter/636176.rdf
Name: citation_code
Units: integer
Description: <p>Publication code</p>
http://lod.bco-dmo.org/id/dataset-parameter/636177.rdf
Name: full_citation
Units: string
Description: <p>Citation for the original publication</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
143361
https://datadocs.bco-dmo.org/file/P66GwRncp3m1r/nut_traits_T1-2.csv
nut_traits_T1-2.csv
Primary data file for dataset ID 636127
download
https://osprey.bco-dmo.org/dataset/636127/data/download
download
onLine
dataset
<p>Data acquisition, methodology, and criteria for inclusion:&nbsp;We comprehensively searched the literature for studies that used unialgal cultures to measure how phytoplankton growth, nutrient content, and nutrient uptake rate respond to nutrient supply. We focused on experiments using nitrate, ammonium, or phosphate as the limiting nutrient. We only compiled studies where light was not strongly limiting, and where only a single nutrient was limiting. For one diazotroph (<em>Trichodesmium</em>), the experiments compiled here did not include nitrogen in the medium.</p>
Specified by the Principal Investigator(s)
<div><span style="font-size:13px">BCO-DMO data manager processing notes</span></div>
<div><span style="font-size:13px">* Version 2 (2021-06-10) replaces version 1 (</span>2016-01-21<span style="font-size:13px">).&nbsp; &nbsp;There was an unsupported character in the source file.&nbsp;Converted to utf-8.&nbsp; Author's name in comment&nbsp;now reads "</span>Toxic Marine Phytoplankton vol. 4, eds. A. Gran´li, B. Sundstr_m, and L. Edler."</div>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: Litchman_2014
Litchman_2014
Unknown Platform
Litchman_2014
Elena Litchman
Michigan State University
Unknown Platform