http://lod.bco-dmo.org/id/dataset/636406
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-01-25
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Ciliate escape response micro-PIV videos collected in the North Atlantic and Gulf of Mexico from 2011-2014 (Protist Behavior and Imposed Flow project)
2016-01-25
publication
2016-01-25
revision
BCO-DMO Linked Data URI
2016-01-25
creation
http://lod.bco-dmo.org/id/dataset/636406
Dr Edward J. Buskey
University of Texas - Marine Science Institute
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Buskey, E. J. (2016) Ciliate escape response micro-PIV videos collected in the North Atlantic and Gulf of Mexico from 2011-2014 (Protist Behavior and Imposed Flow project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2016-01-25) Version Date 2016-01-25 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/636406 [access date]
Ciliate escape response micro-PIV videos Dataset Description: <p><strong>Related Reference:</strong><br />
Gemmell et al. 2015. A tale of the ciliate tail: investigation into the adaptive significance of this sub-cellular structure. Proceedings of the Royal Society B. 282 (1812) DOI: <a href="http://dx.doi.org/10.1098/rspb.2015.0770" target="_blank">10.1098/rspb.2015.0770</a></p>
<p><strong>Related Datasets:</strong><br />
<a href="http://www.bco-dmo.org/dataset/636371">Ciliate PIV data</a><br />
<a href="http://www.bco-dmo.org/dataset/636431">Ciliate PIV data: Fig 3-RSBP</a></p> Methods and Sampling: <p><a href="http://dmoserv3.bco-dmo.org/data_docs/Protist_Behavior_Flow/ciliate_PIV_methods.pdf" target="_blank">Methodology</a></p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1129668 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1129668
completed
Dr Edward J. Buskey
University of Texas - Marine Science Institute
361-749-3102
750 Channel View Drive
Port Aransas
TX
78373
USA
ed.buskey@utexas.edu
pointOfContact
asNeeded
Dataset Version: 2016-01-25
Unknown
fig
description
fps_playback
file_size_MB
file_link
theme
None, User defined
No BCO-DMO term
brief description
file_link
featureType
BCO-DMO Standard Parameters
Camera
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Linking Propulsive Morphology, Swimming Behavior and Sensory Perception by Marine Planktonic Protists to their Trophic Roles within Marine Food Webs
https://osprey.bco-dmo.org/project/542452
Linking Propulsive Morphology, Swimming Behavior and Sensory Perception by Marine Planktonic Protists to their Trophic Roles within Marine Food Webs
<p><em>Description from NSF award abstract:</em><br />
One of the central issues in biological oceanography is to understand the processes that regulate the biomass and distribution of phytoplankton in the ocean. The fate of most phytoplankton is to be consumed by grazers, and it is now generally accepted that marine planktonic protists are the most important grazers on phytoplankton, and that grazing by protists can fundamentally affect phytoplankton biomass and distribution in the ocean. Protists can become temporarily very abundant (up to tens of thousands per liter) and can grow nearly as rapidly as phytoplankton do, which gives them great potential to regulate phytoplankton populations. Adaptations by protists to feed selectively on the fastest growing species of phytoplankton and to reduce predation by metazoan zooplankton should enhance the coupling between phytoplankton growth and grazing, and therefore promote planktonic ecosystem stability. Compared to larger metazoan zooplankton such as copepods, relatively little is known about the morphological and behavioral adaptations in protists for selective feeding and predator avoidance.</p>
<p>The PIs will study details of selective feeding behavior and predator avoidance behavior of free-swimming planktonic protists in 3-dimension using high-speed video. Under the same conditions, they will measure flow fields imposed by individual free-swimming protists using a time-resolving stereo micro-particle image velocimetry (microPIV) system. To gain a mechanistic understanding, they will also conduct empirical data-driven, reality-reproducing computational fluid dynamics (CFD) simulations of the protist-imposed flow fields. The results will be used to test the hypothesis that diversity and flexibility in propulsive morphology facilitates protists to achieve sophisticated swimming behaviors and sensory perception capabilities that adapt them for selective feeding and predator avoidance. These capabilities may also serve as important driving forces for protistan biodiversity, represented by various sizes, shapes, propulsive morphologies and motility patterns.</p>
Protist Behavior and Imposed Flow
largerWorkCitation
project
eng; USA
biota
oceans
2016-01-25
US coastal North Atlantic water, and US coastal Gulf of Mexico water
0
BCO-DMO catalogue of parameters from Ciliate escape response micro-PIV videos collected in the North Atlantic and Gulf of Mexico from 2011-2014 (Protist Behavior and Imposed Flow project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/636423.rdf
Name: fig
Units: unitless
Description: <p>Figure number citing the video: Gemmell et al (2015) RSBP</p>
http://lod.bco-dmo.org/id/dataset-parameter/636424.rdf
Name: description
Units: unitless
Description: <p>Description of PIV video subject</p>
http://lod.bco-dmo.org/id/dataset-parameter/636425.rdf
Name: fps_playback
Units: frames per second
Description: <p>frames per second during playback</p>
http://lod.bco-dmo.org/id/dataset-parameter/636426.rdf
Name: file_size_MB
Units: megabytes
Description: <p>size of video file</p>
http://lod.bco-dmo.org/id/dataset-parameter/636427.rdf
Name: file_link
Units: unitless
Description: <p>link to the video file</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
474
https://datadocs.bco-dmo.org/file/p99nDGEh9XwLp/PIV_ciliate_videos_RSBP_2015.csv
PIV_ciliate_videos_RSBP_2015.csv
Primary data file for dataset ID 636406
download
https://osprey.bco-dmo.org/dataset/636406/data/download
download
onLine
dataset
<p><a href="http://dmoserv3.bco-dmo.org/data_docs/Protist_Behavior_Flow/ciliate_PIV_methods.pdf" target="_blank">Methodology</a></p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing:</strong></p>
<p>Downloaded .avi files from Dryad [2016-01-25]</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: PI Supplied Instrument Description:Photron SA6 high-speed camera with a 150W fiber optic illuminator (Fisher Scientific) Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/