http://lod.bco-dmo.org/id/dataset/636508
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-01-26
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Bioinformatic analyses and field data from the R/V Kilo Moana KM0701 cruise in the South Pacific during 2007 (WP2 project)
2016-01-26
publication
2016-01-26
revision
BCO-DMO Linked Data URI
2016-01-26
creation
http://lod.bco-dmo.org/id/dataset/636508
Zackary I. Johnson
University of Hawai'i
principalInvestigator
James Jeffrey Morris
University of Alabama at Birmingham
principalInvestigator
Steven W. Wilhelm
University of Tennessee Knoxville
principalInvestigator
Erik Zinser
University of Tennessee Knoxville
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Johnson, Z. I., Zinser, E., Morris, J. J., Wilhelm, S. W. (2016) Bioinformatic analyses and field data from the R/V Kilo Moana KM0701 cruise in the South Pacific during 2007 (WP2 project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 26 January 2016) Version Date 2016-01-26 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/636508 [access date]
BioInformatics - MorrisJPR_HOOHgenes_2016 Dataset Description: <p>Bioinformatic analyses and field data associated w. Morris et al. 2016, JPR</p>
<p>Served as links to the Morris contributed package and to GitHub</p> Methods and Sampling:
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0526462 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0526462
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0526072 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0526072
completed
Zackary I. Johnson
University of Hawai'i
1-252-504-7543
Marine Sciences and Conservation 135 Duke Marine Lab Rd.
Beaufort
NC
28516
USA
zij@duke.edu
pointOfContact
James Jeffrey Morris
University of Alabama at Birmingham
205-934-9498
1300 University Blvd CH253
Birmingham
AL
35294
USA
evolve@uab.edu
pointOfContact
Steven W. Wilhelm
University of Tennessee Knoxville
865-974-0665
1499 Circle Dr Room 637
Knoxville
TN
37996
USA
wilhelm@utk.edu
pointOfContact
Erik Zinser
University of Tennessee Knoxville
1-865-974-9283
Dept. of Microbiology M409 WLS
Knoxville
TN
37996
USA
ezinser@utk.edu
pointOfContact
asNeeded
Dataset Version: 26 January 2016
Unknown
CruiseId
Site
Latitude
Longitude
Description
Link
theme
None, User defined
Cruise identfier
site
latitude
longitude
sample description
external_link
featureType
BCO-DMO Standard Parameters
KM0701
service
Deployment Activity
SP1/South Pacific
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Ecotypic Diversity and Adaptation of Prochlorococcus in the Stratified, High Temperature Waters of the Western Pacific Warm Pool
http://www.soest.hawaii.edu/oceanography/zij/wp2/
Ecotypic Diversity and Adaptation of Prochlorococcus in the Stratified, High Temperature Waters of the Western Pacific Warm Pool
<p>In most tropical and subtropical ecosystems, the prokaryotic cyanobacteria Prochlorococcus plays a critical role in ecosystem structure and biogeochemistry because it is the numerically dominant photoautotrophic picoplankter. Although the worldwide distributions of Prochlorococcus are generally understood, the precise reasons for its overwhelming ecological success have remained elusive. This picture has recently become complicated by the discovery that Prochlorococcus is not monophyletic and that different genetic clades of Prochlorococcus have remarkably different distributions with depth and over oceanic basins. Thus, our understanding of factors that structure Prochlorococcus populations in the natural environment, and our ability to predict how this structure might respond to environmental changes, are limited. The PIs will address this by focusing on naturally occurring populations in the Western Pacific Warm Pool, an area where Prochlorococcus is known to dominate, but where there are no data on clade abundances. In addition to being a large region of the Pacific Ocean with significance to the global carbon cycle, the Western Pacific Warm Pool (WPWP) is of particular interest because it is typically highly stratified, with surface waters having extreme temperatures and light levels compared to those at depth. Populations of Prochlorococcus at the surface and at depth experience different environmental pressures, and may belong to different clades and have different adaptive physiologies. The PIs will test this hypothesis on a cruise from Hawaii to Brisbane, Australia through the stratified WPWP. Samples from this transect will be used to quantify (using quantitative PCR) the six known clades of Prochlorococcus and to search for new clades (using clone libraries and isolates) and their abundances. The ultimate goal is to relate clade abundances to temperature, light, nutrient concentrations and other measured biological, chemical and physical variables.</p>
<p>This project will encompass multiple layers of outreach to scientists and the scientific community at large. Data and strains will be deposited at national repositories and results will be disseminated through publications, professional meeting presentations, and a project web site. Undergraduates and graduate students will be trained, and students will be an integral part of the data collection, analysis, and dissemination phases and will be encouraged to present at national meetings. Cross-institutional training will enhance graduate student education. The PIs will integrate results from this project into undergraduate and graduate curricula at their home institutions and will be attending the NSF sponsored 'Scientific Inquiry in the K-16 Classroom' seminar to develop methods to link results to primary education. The PIs will use presentations and activities with local outreach groups, such as the Hawaii Academy of Sciences, to encourage scientific understanding through mentoring, science symposia and science competitions for primary and secondary school students.</p>
<p><a href="http://bcodata.whoi.edu/WP2/wp2_cruise_report.pdf">WP2/KM0701 Cruise Report</a></p>
<p> </p>
WP2
largerWorkCitation
project
eng; USA
oceans
SP1/South Pacific
2016-01-26
Western Pacific
0
BCO-DMO catalogue of parameters from Bioinformatic analyses and field data from the R/V Kilo Moana KM0701 cruise in the South Pacific during 2007 (WP2 project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/636531.rdf
Name: CruiseId
Units: text
Description: <p>Official UNOLS Cruise Id</p>
http://lod.bco-dmo.org/id/dataset-parameter/636532.rdf
Name: Site
Units: text
Description: <p>Site Id</p>
http://lod.bco-dmo.org/id/dataset-parameter/636533.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude (South is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/636534.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude (West is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/636535.rdf
Name: Description
Units: text
Description: <p>Package/Link Description</p>
http://lod.bco-dmo.org/id/dataset-parameter/636536.rdf
Name: Link
Units: text
Description: <p>Link to GitHub</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
475
https://datadocs.bco-dmo.org/file/GwwAkGPS1vDWQB/Bioinformatics.csv
Bioinformatics.csv
Primary data file for dataset ID 636508
download
https://osprey.bco-dmo.org/dataset/636508/data/download
download
onLine
dataset
<p><strong>BCO-DMO Processing Notes</strong><br />
- Links generated to GitHub and the Morris Package</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: KM0701
KM0701
R/V Kilo Moana
Community Standard Description
International Council for the Exploration of the Sea
R/V Kilo Moana
vessel
KM0701
Zackary I. Johnson
University of Hawai'i
http://bcodata.whoi.edu/WP2/wp2_cruise_report.pdf
Report describing KM0701
R/V Kilo Moana
Community Standard Description
International Council for the Exploration of the Sea
R/V Kilo Moana
vessel