19:I[42426,["/_next/static/immutable/chunks/1xctgzqre-wsy.js","/_next/static/immutable/chunks/06_-wz6pdtp2b.js","/_next/static/immutable/chunks/30e52g49hg40p.js","/_next/static/immutable/chunks/02yq6tul2z-oh.js","/_next/static/immutable/chunks/10bx_ec2vj7n_.js","/_next/static/immutable/chunks/33bfn03fo8xnt.js","/_next/static/immutable/chunks/0tfjf78scu61b.js","/_next/static/immutable/chunks/31xnvej4n1bi9.js"],"default"] 1a:T194d,

Methods (see SI in Waldbusser et al. 2015, Nature Climate Change for extended methods):
Water collection and stripping dissolved inorganic carbon:
For each experiment, 1 um filtered seawater was collected from Yaquina Bay, Oregon. The alkalinity was reduced by addition of trace metal grade HCl in near alkalinity equivalence, followed by bubbling with ambient air for 48 hours to strip (DIC) as CO2. The acidified, stripped seawater was then 0.22 um filtered, pasteurized, and stored at 2-5 degrees C. Prior to treatment manipulation, the seawater was bubbled with 0.2 um-filtered outside air until atmospheric conditions were achieved, then carbonate DIC and alkalinity values were determined for manipulations.

Experimental manipulation:
A 4x4 factorial experimental design was developed to target 16 total treatment combinations of PCO2 and War (saturation state with respect to aragonite) (Supplementary Table 1, Figure 1), with triplicate 500 ml biological oxygen demand (BOD) bottles per treatment. Two separate experiments were conducted with each species. DIC and alkalinity concentrations were calculated for each of the 16 target treatment combinations (PCO2 and War). Experimental treatments were created by gravimetric addition of mineral acids and bases to the decarbonated seawater in gas-impermeable bags customized with luer lock fittings. Aliquots of a concentrated, ambient-PCO2, solution of Na2CO3 and and NaHCO3 were added to adjust DIC to target treatment level followed by 0.1N HCl to adjust alkalinity. Immediately following chemical manipulation, the bags with treatment water were stored without head-space at 2-5 degrees C for up to several weeks before spawning broodstock. Antibiotics were added to BOD bottles (2 ppm chloramphenicol and 10 ppm ampicillin), which we found to have no negative effects on larvae or carbonate chemistry in prior trials. Controls were included to evaluate experimental manipulations and incubation conditions by hatching eggs in open culture containers, as well as by using stored seawater collected prior to decarbonation and not subjected to chemical manipulations described in this study.

Carbonate chemistry measurements:
Carbonate chemistry samples were collected from the treatment water bags just prior to stocking larvae in BOD bottles, and also from each BOD bottle at the end of the incubation period. Carbonate chemistry samples were collected in 350 ml amber glass bottles with polyurethane-lined crimp-sealed metal caps and preserved by addition of 30 ml of saturated HgCl2. Analyses of PCO2 and DIC were carried out following the procedure of Bandstra et al. modified for discrete samples as in Hales et al. Gas and liquid standards that bracketed the experimental range (Supplementary Table 1) were employed to ensure accuracy.

Larval Rearing:
Broodstock for mussel (Mytilus galloprovincialis) and oyster (Crassostrea gigas) experiments were obtained from Carlsbad Aquafarm, Carlsbad, CA, or from selected stocks of the Molluscan Broodstock Program (MBP), Yaquina Bay, Oregon, respectively. Broodstock spawning was stimulated by rapid increase of 10 degrees C in ambient seawater temperature. Gametes were collected from at least two male and two female parents, and the eggs fertilized in ambient seawater. Developing embryos were added at a density of 10 larvae ml-1 to triplicate BOD bottles per treatment after visual verification of successful fertilization. Sealed BOD bottles were oriented on their side and incubated for 48 hours at culture temperature (18 degrees C for mussels and 22 degrees C and 25 degrees C for oyster trials 1 and 2, respectively). Larvae from each BOD bottle were concentrated after a filtered chemistry sample was collected, sampled in triplicate, and preserved in 10% formalin buffered to ~8.1-8.2.

Larval shell development and size:
Larvae were examined microscopically to determine the proportion of normally and abnormally developed D-hinge (prodissoconch I) larvae as well as larval shell lengths. Normally developed larvae were characterized by a straight hinge, smooth curvature along the edge of the valve, and appearance of tissue within the translucent shells. Digital images were used to determined shell length (longest axis perpendicular to the hinge) of normally developed larvae only. Images were analyzed using ImageJ (V1.42).

Data analyses:
Proportion normal data were scaled to the un-manipulated, seawater control for each experiment by dividing treatment values by control values. We used a two-way analysis of variance (ANOVA), with PCO2 and War as the primary factors with experiment as a blocking factor. Proportion normal data were square-root arcsine transformed. Assumptions of normality and homoscedascity were checked and any violations were managed as noted. Initial data analyses found unequal variance across treatment groups in the transformed proportion normal data, and mean values per treatment were used to improve heteroscedascity as well as blocking by experiment. To evaluate pH effects on shell development we ran a series of regression analyses of transformed proportion normal regressed on pH, within each War treatment and experiment. We then used a Bonferroni correction for multiple tests of significance to reduce Type 1 error. Analyses were conducted with the SAS software suite (v9.3). Non-linear, least-squares regression in Sigma-Plot (v12.5) was used to fit functional responses of development (logistic) and shell length (power).

References:
Bandstra L, Hales B & Takahashi T. 2006. High-frequency measurements of total CO2: Method development and first oceanographic observations. Mar Chem 100(1-2): 24-38.

Hales B, Takahashi T & Bandstra L. 2005. Atmospheric CO2 uptake by a coastal upwelling system. Global Biogeochem Cycles 19(1).

Langdon CJ, Evans F, Jacobson D and Blouin, M. 2003. Yields of cultured Pacific oysters Crassostrea gigas Thunberg improved after one generation of selection. Aquaculture, 220:227-244.

American Society for Testing and Materials. 2004. Standard guide for conducting static acute toxicity tests starting with embryos of four species of saltwater bivalve molluscs. E724-98. 22 pp.

1b:Te5f,Extracted from the NSF award abstract: The shift in the carbonate chemistry of marine waters, as a result of direct anthropogenic CO2 addition and climate-driven changes in circulation, poses a threat to many organisms. A rapidly expanding body of literature has shown that increasing levels of carbonic acid and decreasing carbonate ion levels will have deleterious effects on many marine organisms; however little is known about the mode of action of these changes in water chemistry on marine bivalves. Many marine organisms, particularly bivalves, depend critically on the production of calcium carbonate mineral, and this material becomes thermodynamically unstable under more acidic conditions. The actual mineral precipitation, however, takes place within interstitial volumes intermittently separated from ambient seawater by biological membranes. Therefore, abiotic relationships between solid phase minerals and seawater thermodynamics are oversimplified representations of the complex interplay among seawater chemistry, bivalve physiology, and shell growth processes. In this integrative, multi-disciplinary project we will develop and apply novel experimental approaches to elucidate fundamental physiological responses to changes in seawater chemistry associated with ocean acidification. The four primary objectives of this project are to: 1) develop a novel experimental approach and system capable of unique combinations of pCO2, pH, and mineral saturation state (Ω), 2) conduct short-term exploratory experiments to determine bivalve responses to different carbonate system variables, 3) conduct longer-term directed studies of the integrated effects of different carbonate system variables over early life history of bivalves, and 4) compare these biological responses among a group of bivalve species that differ in shell mineralogy and nativity to the periodically acidified upwelling region of the Pacific Northwest coast of North America. By isolating the effects of different components of the carbonate system on the early life stages of marine bivalves, e.g. does an oyster larvae respond more strongly to pCO2 or mineral saturation state?, we can begin to identify the mechanisms behind bivalve responses as well as understand how these organisms survive in transiently corrosive conditions. Laboratory based experiments on three primary taxa (oyster, mussel, clam) having native and non-native species pairs to Oregon’s coastal waters: oysters Ostrea lurida and Crassostrea gigas; mussels Mytilus califonianus and Mytilus galloprovincialis; and clams Macoma nasuta and Ruditapes philippinarum, will allow for species comparisons among different shell mineralogy, microstructure, life-history, and adaptability. High-precision pCO2 and dissolved inorganic carbon (DIC) instruments will be used in experiments to control and properly constrain the carbonate chemistry. A compliment of response variables will be measured across the early life stages of these species that include tissue acid-base balance, shell mineralogy and chemistry, respiration rate, and behavior. Additionally, our emphasis will be placed on observation of development, growth, and shell structure by directly linking observational data with other measured response data. An adaptive strategy using short-term experiments to determine the most salient variables in the carbonate system to manipulate in longer-term studies is being employed. This approach allows us to evaluate acute effects, mimicking diurnal changes to carbonate variables often found in coastal areas, and integrated chronic effects mimicking a more gradual acidification due to the rise in atmospheric CO2.6:["$","$L19",null,{"dataset":{"_id":"638362","description":"

Chemistry and organism response data from Waldbusser et al. 2015, Nature Climate Change. Experiments were conducted in the Hatfield Marine Science Center, Newport, OR.

Related publications:
\nWaldbusser, G., et al. 2015. Saturation-state sensitivity of marine bivalve larvae to ocean acidification. Nature Climate Change, 5, 273-280. doi:10.1038/nclimate2479

\n","problem":"","acquisition":"$1a","processing":"

All the proportion normal data have been corrected to the control values for each experiment.

BCO-DMO edits:
\n- modified parameter names to conform with BCO-DMO naming conventions;
\n- replaced C. gigas and M. galloprovincialis with full names, Crassostrea gigas and Mytilus galloprovincialis;
\n- replaced missing data with \"nd\", meaning \"no data\".

\n","bcodmoProcessing":"","title":"Chemistry and organism response data from Waldbusser et al. 2015, Nature Climate Change; from experiments conducted at the Hatfield Marine Science Center, Newport, OR in 2013","nickname":"Oyster Mussel Carbonate Responses","dataUrl":"","currentState":"Final no updates expected","currentStateId":"7","validated":true,"restricted":false,"version":"10 Feb 2016","version_date":"2016-02-10T05:00:00.000Z","abstract":"","citation":"Waldbusser, G. G. (2016) Chemistry and organism response data from Waldbusser et al. 2015, Nature Climate Change; from experiments conducted at the Hatfield Marine Science Center, Newport, OR in 2013. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 10 Feb 2016) Version Date 2016-02-10 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/638362 [access date]","citationParts":{"identifier":"http://lod.bco-dmo.org/id/dataset/638362","versionDate":"2016-02-10","versionId":"10 Feb 2016","year":"2016","title":"Chemistry and organism response data from Waldbusser et al. 2015, Nature Climate Change; from experiments conducted at the Hatfield Marine Science Center, Newport, OR in 2013","authors":"Waldbusser, G. G.","publisher":"Biological and Chemical Oceanography Data Management Office (BCO-DMO)."},"doi":"","release_date":null,"field_dataset_location":"","temporal_extent":{"start":null,"end":null},"temporal":{"resolution":"","type":"","start":{"value":"","label":""},"end":{"value":"","label":""}},"spatial_extent":{"shape":"","center":{"latitude":0,"longitude":0},"wkt":"","north":0,"east":0,"south":0,"west":0},"dataset_type":["experimental"],"keywords":["biota","oceans"],"data_files":[{"id":"900845","title":"oyster_mussel_carbonate.csv","url":"https://datadocs.bco-dmo.org/dataset/638362/file/P66Gw2Qf5AoloK/oyster_mussel_carbonate.csv","showTableUrl":"https://www.bco-dmo.org/dataset/638362/data/view/900845","description":"Primary data file for dataset ID 638362","filename":"oyster_mussel_carbonate.csv","bytesize":5167,"checksum":{"value":"31351fea3ff28a64cd35cf6394e0758e","Algorithm":{"_id":"190","name":"MD5"}},"mimetype":"text/csv","fileType":{"_id":"192","name":"Comma Separated Values (.csv)"},"isErddap":"","date":"","isPublicDuringEmbargo":false,"primaryDataFile":true,"showTable":true,"restricted":false}],"supplemental_files":[],"roles":[{"role":{"_id":"138","name":"Principal Investigator"},"performedBy":{"_id":"51380","name":"George G. Waldbusser"},"performedAtOrganization":{"_id":"124","name":"Oregon State University"}},{"role":{"_id":"145","name":"BCO-DMO Data Manager"},"performedBy":{"_id":"51498","name":"Shannon Rauch"},"performedAtOrganization":{"_id":"191","name":"Woods Hole Oceanographic Institution"}}],"deployments":[{"_id":"557259","name":"Waldbusser_HMSC","synonyms":[],"dates":{"start":"2013-08-19T00:00:00.000Z","end":null},"platform":{"_id":"472782","name":"OSU-HMSC"},"chiefScientists":[]}],"funding":[{"_id":"54838","name":"OCE-1041267","fundingSource":{"_id":"355","name":"NSF Division of Ocean Sciences"},"url":"https://www.nsf.gov/awardsearch/show-award?AWD_ID=1041267"}],"instruments":[{"_id":"638371","name":"Biological Oxygen Demand (BOD) bottles","description":"","type_id":"542498","type_name":"Bottle","type_desc":"A container, typically made of glass or plastic and with a narrow neck, used for storing drinks or other liquids.","type_acronym":"Bottle"},{"_id":"638372","name":"microscope","description":"","type_id":"708","type_name":"Microscope - Optical","type_desc":"Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a \"light microscope\".","type_acronym":""}],"parameters":[{"_id":"638373","name":"species","format":"","frictionlessType":"","description":"

Species of mussel or oyster.

","units":{"_id":"","name":"dimensionless"},"type":{"_id":"976","name":"species","description":"

a taxonomic binomial that consists of a genus name followed by the species name of an organism

"}},{"_id":"638374","name":"experiment","format":"","frictionlessType":"","description":"

Experiment identifier.

","units":{"_id":"","name":"dimensionless"},"type":{"_id":"1073","name":"no_bcodmo_term","description":"

An association with a community-wide standard parameter has not yet been made.

"}},{"_id":"638375","name":"omega_trt","format":"","frictionlessType":"","description":"

Treatment values for saturation state of aragonite are noted as "a" to "d" denoted the lowest to highest values.

","units":{"_id":"","name":"dimensionless"},"type":{"_id":"1073","name":"no_bcodmo_term","description":"

An association with a community-wide standard parameter has not yet been made.

"}},{"_id":"638376","name":"CO2_trt","format":"","frictionlessType":"","description":"

Treatment values for PCO2 are noted as Low (L), Mid-Low (ML), Mid_High (MH), and High (H).

","units":{"_id":"","name":"dimensionless"},"type":{"_id":"1073","name":"no_bcodmo_term","description":"

An association with a community-wide standard parameter has not yet been made.

"}},{"_id":"638377","name":"alk","format":"","frictionlessType":"","description":"

Alkalinity.

","units":{"_id":"","name":"micromoles per kilogram (umol/kg)"},"type":{"_id":"1073","name":"no_bcodmo_term","description":"

An association with a community-wide standard parameter has not yet been made.

"}},{"_id":"638378","name":"DIC","format":"","frictionlessType":"","description":"

Dissolved inorganic carbon (DIC).

","units":{"_id":"","name":"micromoles per kilogram (umol/kg)"},"type":{"_id":"1187","name":"DIC","description":"

Dissolved Inorganic Carbon

"}},{"_id":"638379","name":"HCO3","format":"","frictionlessType":"","description":"

Bicarbonate (HCO3).

","units":{"_id":"","name":"micromoles per kilogram (umol/kg)"},"type":{"_id":"1073","name":"no_bcodmo_term","description":"

An association with a community-wide standard parameter has not yet been made.

"}},{"_id":"638380","name":"CO3","format":"","frictionlessType":"","description":"

CO3

","units":{"_id":"","name":"micromoles per kilogram (umol/kg)"},"type":{"_id":"1073","name":"no_bcodmo_term","description":"

An association with a community-wide standard parameter has not yet been made.

"}},{"_id":"638381","name":"PCO2","format":"","frictionlessType":"","description":"

Partial pressure of carbon dioxide (PCO2).

","units":{"_id":"","name":"micromoles per kilogram (umol/kg)"},"type":{"_id":"1991","name":"pCO2","description":"

Partial pressure of carbon dioxide {pCO2} in the water body by computation from pH and alkalinity.

"}},{"_id":"638382","name":"pH","format":"","frictionlessType":"","description":"

pH.

","units":{"_id":"","name":"pH scale"},"type":{"_id":"1892","name":"pH","description":"

pH: The measure of the acidity or basicity of an aqueous solution

"}},{"_id":"638383","name":"omega","format":"","frictionlessType":"","description":"

Saturation state of aragonite.

","units":{"_id":"","name":"dimensionless"},"type":{"_id":"1073","name":"no_bcodmo_term","description":"

An association with a community-wide standard parameter has not yet been made.

"}},{"_id":"638384","name":"fracN","format":"","frictionlessType":"","description":"

Fraction of Normally Developed Larvae, proportion of normal larvae over all larvae.

","units":{"_id":"","name":"dimensionless (proportion)"},"type":{"_id":"1963","name":"OM_ar","description":"

The saturation state of seawater with respect to aragonite (known as OMEGA_ar) is a measure of the thermodynamic potential for aragonite to form or to dissolve, and is defined as the product of the concentrations of dissolved calcium and carbonate ions in seawater, divided by their product at equilibrium.

"}},{"_id":"638385","name":"size","format":"","frictionlessType":"","description":"

Size of shell.

","units":{"_id":"","name":"micrometers (um)"},"type":{"_id":"1073","name":"no_bcodmo_term","description":"

An association with a community-wide standard parameter has not yet been made.

"}},{"_id":"638386","name":"fracN_stdev","format":"","frictionlessType":"","description":"

Standard deviation of fracN.

","units":{"_id":"","name":"dimensionless"},"type":{"_id":"1974","name":"standard deviation","description":"

Generic standard deviation value, taking on the units of the parameter that it is tied to.

"}},{"_id":"638387","name":"size_stdev","format":"","frictionlessType":"","description":"

Standard deviation of size.

","units":{"_id":"","name":"micrometers (um)"},"type":{"_id":"1974","name":"standard deviation","description":"

Generic standard deviation value, taking on the units of the parameter that it is tied to.

"}}],"related_publications":[],"related_datasets":[],"services":[{"grouping":"","items":[{"name":"View Data","description":"An in-browser view of the primary tabular data file","url":"https://www.bco-dmo.org/dataset/638362/data/view","contentType":"text/html","actionType":"view"}]},{"grouping":"Metadata","items":[{"name":"HTML","description":"A simple HTML page of the dataset metadata","url":"https://www.bco-dmo.org/dataset/638362/description","contentType":"text/html","actionType":"view"},{"name":"PDF","description":"A PDF of the HTML dataset metadata","url":"https://www.bco-dmo.org/dataset/638362/Dataset_description.pdf","contentType":"application/pdf","actionType":"download"},{"name":"ISO 19115-2 (NOAA Profile)","description":"","url":"https://www.bco-dmo.org/dataset/638362/iso","contentType":"application/xml","actionType":"download"}]}],"programs":[{"_id":"2030","name":"Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)","acronym":"SEES-OA"}],"projects":[{"_id":"2167","name":"A mechanistic understanding of the impacts of ocean acidification on the early life stages of marine bivalves","acronym":"Mechanisms of bivalve response to acidification","description":"$1b"}],"archives":[],"license":{"name":"Creative Commons Attribution 4.0","id":"CC-BY-4.0","uri":"https://creativecommons.org/licenses/by/4.0/","spdxUri":"https://spdx.org/licenses/CC-BY-4.0"},"metrics":{"views":{"count":144},"downloads":{"count":481}}}}]