http://lod.bco-dmo.org/id/dataset/639502
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-03-02
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Whole organism mRNA sequencing - RNAseq data from mRNA from McMurdo Station Hofmann Antarctica at McMurdo Station starting 2015 (OA pH, Temperature, Calcium Inverts project)
2016-03-03
publication
2016-03-03
revision
BCO-DMO Linked Data URI
2016-03-03
creation
http://lod.bco-dmo.org/id/dataset/639502
Gretchen E. Hofmann
University of California-Santa Barbara
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Hofmann, G. E. (2016) Whole organism mRNA sequencing - RNAseq data from mRNA from McMurdo Station Hofmann Antarctica at McMurdo Station starting 2015 (OA pH, Temperature, Calcium Inverts project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 03 March 2016) Version Date 2016-03-03 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/639502 [access date]
mRNA sequencing - RNAseq Dataset Description: <p><strong>Accession number:</strong> SRR2463656.<br />
<strong>Species name:</strong> /Limacina helicina antarctica/<br />
<strong>Description of the types of sequences: *Whole organism mRNA sequencing<br />
Locations where species were collected:</strong> 77.5649°S, 166.18712°E<br />
<strong>Sequencing and analysis methods:</strong> mRNA sequencing on an Illumina<br />
NextSeq500 using the mid-output mode with 300 cycles and 150 bp<br />
paired-end reads.</p>
Funding provided by NSF Antarctic Sciences (NSF ANT) Award Number: PLR-0944201 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0944201
Funding provided by NSF Antarctic Sciences (NSF ANT) Award Number: PLR-1246202 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1246202
completed
Gretchen E. Hofmann
University of California-Santa Barbara
805-893-6175
Department of Ecology, Evolution and Marine Biology, UCSB 4310 Marine Science Institute
Santa Barbara
CA
93106-9620
USA
hofmann@ucsb.edu
pointOfContact
asNeeded
Dataset Version: 03 March 2016
Unknown
Accession_Number
Species_Name
Description
Site
Latitude
Longitude
Sequencing_and_Analysis_Methods
link
theme
None, User defined
accession number
species scientific name (binomial)
sample description
site
latitude
longitude
external_link
featureType
BCO-DMO Standard Parameters
Hofmann_Antarctica_McMurdoStation
service
Deployment Activity
McMurdo Station -77.5649, 166.18712
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Linking natural variability and anthropogenic changes in pH and temperature to performance in calcifying Antarctic marine invertebrates
https://osprey.bco-dmo.org/project/553634
Linking natural variability and anthropogenic changes in pH and temperature to performance in calcifying Antarctic marine invertebrates
<p>Abstract: The research supported in this project will examine the effects of environmental change on a key Antarctic marine invertebrate, a pelagic mollusk, the pteropod, Limacina helicina antarctica. There are two main activities in this project: (1) to deploy oceanographic equipment, in this case, autonomously recording pH sensors called SeaFETs and other devices that record temperature and salinity, and (2) to use these environmental data in the laboratory at McMurdo Station to study the response of the marine invertebrates to future changes in water quality that is expected in the next few decades. Notably, changes in oceanic pH (aka ocean acidification) and ocean warming are projected to be particularly threatening to calcifying marine organisms in cold-water, high latitude seas, making tolerance data on these organisms a critical research need in Antarctic marine ecosystems. </p>
<p>These Antarctic shelled-animals are especially vulnerable to dissolution stress from ocean acidification because they currently inhabit seawater that is barely at the saturation level to support biogenic calcification. Indeed, these polar animals are considered to be the 'first responders' to chemical changes in the surface oceans. Thus, this project will lead to information about the adaptive capacity of L. helcina antarctica. From an ecological perspective this is important because this animal is a critical part of the Antarctic food chain in coastal waters and changes in its abundance will impact other species. Finally, the research conducted in this project will serve as a training and educational opportunity for undergraduate and graduate students as well as postdoctoral scholars.</p>
OA pH, Temp, Calc Inverts
largerWorkCitation
project
eng; USA
oceans
McMurdo Station -77.5649, 166.18712
2016-03-03
McMurdo Sound, Antarctica
0
BCO-DMO catalogue of parameters from Whole organism mRNA sequencing - RNAseq data from mRNA from McMurdo Station Hofmann Antarctica at McMurdo Station starting 2015 (OA pH, Temperature, Calcium Inverts project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/639590.rdf
Name: Accession_Number
Units: text
Description: <p>Accession Number</p>
http://lod.bco-dmo.org/id/dataset-parameter/639591.rdf
Name: Species_Name
Units: text
Description: <p>Species Name</p>
http://lod.bco-dmo.org/id/dataset-parameter/639592.rdf
Name: Description
Units: text
Description: <p>Accession Description</p>
http://lod.bco-dmo.org/id/dataset-parameter/639593.rdf
Name: Site
Units: text
Description: <p>Site of Collection</p>
http://lod.bco-dmo.org/id/dataset-parameter/639594.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude (South is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/639595.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude (West is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/639596.rdf
Name: Sequencing_and_Analysis_Methods
Units: text
Description: <p>Accession Sequencing and Analysis Methods</p>
http://lod.bco-dmo.org/id/dataset-parameter/639597.rdf
Name: link
Units: text
Description: <p>Link to Accession in Genbank</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://osprey.bco-dmo.org/dataset/639502/data/download
download
onLine
dataset
<p><strong>Accession number:</strong> SRR2463656.<br />
<strong>Species name:</strong> /Limacina helicina antarctica/<br />
<strong>Description of the types of sequences: *Whole organism mRNA sequencing<br />
Locations where species were collected:</strong> 77.5649°S, 166.18712°E<br />
<strong>Sequencing and analysis methods:</strong> mRNA sequencing on an Illumina<br />
NextSeq500 using the mid-output mode with 300 cycles and 150 bp<br />
paired-end reads.</p>
Specified by the Principal Investigator(s)
<p><strong>Accession number:</strong> SRR2463656.<br />
<strong>Species name:</strong> /Limacina helicina antarctica/<br />
<strong>Description of the types of sequences: *Whole organism mRNA sequencing<br />
Locations where species were collected:</strong> 77.5649°S, 166.18712°E<br />
<strong>Sequencing and analysis methods:</strong> mRNA sequencing on an Illumina<br />
NextSeq500 using the mid-output mode with 300 cycles and 150 bp<br />
paired-end reads.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: Hofmann_Antarctica_McMurdoStation
Hofmann_Antarctica_McMurdoStation
McMurdo Station
laboratory
Hofmann_Antarctica_McMurdoStation
Gretchen E. Hofmann
University of California-Santa Barbara
McMurdo Station
laboratory