http://lod.bco-dmo.org/id/dataset/639731
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-03-07
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
California mussel body size data for RNA-Seq project from UCSB Mussel Growth study from Hofmann laboratory at Campus Point, Goleta, CA in 2015 (OMEGAS-II project)
2016-03-07
publication
2016-03-07
revision
BCO-DMO Linked Data URI
2016-03-07
creation
http://lod.bco-dmo.org/id/dataset/639731
Gretchen E. Hofmann
University of California-Santa Barbara
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Hofmann, G. E. (2016) California mussel body size data for RNA-Seq project from UCSB Mussel Growth study from Hofmann laboratory at Campus Point, Goleta, CA in 2015 (OMEGAS-II project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 07 March 2016) Version Date 2016-03-07 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/639731 [access date]
UCSB Mussel Growth - Mussel body size data for RNA-Seq project Dataset Description: <p>Mussel Growth Data - UCSB - Mussel body size data for RNA-Seq project</p>
<p>63h D-hinge larvae reared under 350µatm and 1300 µatm, described in: High pCO2 affects body size, but not gene expression in larvae of the California mussel (Mytilus californianus)</p>
<p><strong>Sample Id: "</strong>11-L-un" or "12-H-un"<br />
Where H refers to high CO2<br />
L= low CO2<br />
The number is bucket number<br />
And 'un' refers to the fact the cultures were unfiltered</p>
<p><strong>Related Reference:</strong><br />
Kelly, M.W., J. L. Padilla-Gamiño, G. E. Hofmann (2015) High pCO<sub>2</sub> affects body size, but not gene expression in larvae of the California mussel (<em>Mytilus californianus)</em>. <em>ICES Journal of Marine Science</em>. doi: 10.1093/icesjms/fsv184.</p> Methods and Sampling: <p>63h D-hinge larvae reared under 350µatm and 1300 µatm, described in: High pCO2 affects body size, but not gene expression in larvae of the California mussel (Mytilus californianus)</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1220359 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1220359
completed
Gretchen E. Hofmann
University of California-Santa Barbara
805-893-6175
Department of Ecology, Evolution and Marine Biology, UCSB 4310 Marine Science Institute
Santa Barbara
CA
93106-9620
USA
hofmann@ucsb.edu
pointOfContact
asNeeded
Dataset Version: 07 March 2016
Unknown
SITE
Latitude
Longitude
sampleID
FAMILY
co2_treat
max_diameter
theme
None, User defined
site
latitude
longitude
sample identification
family
treatment
diameter
featureType
BCO-DMO Standard Parameters
Hofmann_CampusPoint_Goleta_CA
service
Deployment Activity
Campus Point Goleta, CA 34.30 -119.84
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
OMEGAS II - Linking ecological and organismal responses to the ocean acidification seascape in the California Current System
http://omegas.science.oregonstate.edu
OMEGAS II - Linking ecological and organismal responses to the ocean acidification seascape in the California Current System
<p><em>Project abstract:</em></p>
<p>This project is a renewal of an existing ocean acidification (OA) grant supporting an interdisciplinary research team (called OMEGAS) with expertise in oceanography, ecology, biogeochemistry, molecular physiology, and molecular genetics. Research to date has documented a dynamic oceanographic mosaic in the inner shelf of the California Current System (CCS) that spans 1,200+ km and varies at tidal, diurnal, event, and seasonal temporal scales at local to ocean basin spatial scales. In OMEGAS II, the project seeks to better understand the drivers of this striking time-space variability, and to link the OA seascape to the physiological and ecological performance of a key member of this ecosystem, the mussel Mytilus californianus. In addition, the investigators will explore the influence of this oceanographic mosaic on species interactions and community organization. As a dominant habitat-forming species, strong interactor, and major space occupant, M. californianus is arguably the core component of the rocky intertidal ecosystem along the upwelling-dominated CCS. Using an interdisciplinary, spatially extensive approach integrating inner shelf oceanography with ecology, physiology, and eco-mechanics, the interdisciplinary team will study the response of juvenile mussels M. californianus to OA. The studies span levels of biological organization, thereby allowing assessment of how the cost of forming a shell under field conditions might influence physiological performance and resistance to predation. This investigation will include modeling to link to larger-scale ecosystem and oceanographic dynamics in the CCS and beyond.</p>
<p>Results from OMEGAS I show that the growth, survival, and shell strength of mussel larvae are strongly negatively affected by elevated pCO2, and that growth of adult mussels varied among sites within regions and between regions. Emerging data on natural variability in seawater conditions will allow a deeper exploration of the organismal response of M. californianus, and the ecological consequences of traits, such as reduced shell thickness and strength. The present project will expand and strengthen the existing oceanographic network to increase our understanding of the coastal OA regime, and provide the environmental context for ecological and physiological research. Specifically, this project will (1) conduct field and laboratory experiments on the influence of OA on the growth, shell accretion, and resistance to predation of juvenile mussels collected from 10 sites spanning 1,400 km of coastline, (2) link the OA-sensor oceanographic "backbone" to an existing database of community structure via ecological modeling to assess the influence of OA on coastal variation in community organization, (3) determine the physiological responses of juvenile mussels following field deployments and culture under common garden conditions to evaluate mechanistic underpinnings to the responses observed in mussels from different sites, (4) explore the physiological and transcriptomic response of mussels in lab mesocosms to field-documented variability in pCO2, and (5) using modified ROMS models, evaluate the linkage between basin-scale oceanography and local-scale variation in inner-shelf oceanography to evaluate the relative influences of large-to-local scale factors on OA variability. This research aims to understand how coastal ecosystems will respond to OA, and thus to develop our capacity to predict the future impact of OA on coastal ecosystems.</p>
<p><strong>PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH</strong><br />
Hettinger, A., E. Sanford, T. M. Hill, J. D. Hosfelt, A. D. Russell, and B. Gaylord.. "The influence of food supply on the response of Olympia oyster larvae to ocean acidification.," <em>Biogeosciences</em>, v.10, 2013, p. 6629.</p>
<p>Hettinger, A., E. Sanford, T.M. Hill, E.A. Lenz, A.D. Russell, and B. Gaylord. "Larval carry-over effects from ocean acidification persist in the natural environment.," <em>Global Change Biology</em>, 2013.</p>
<p>Hofmann, G. E., T. G. Evans, M. W. Kelly, J. L. Padilla-Gamiño, C. A. Blanchette, L. Washburn, F. Chan, M. A. McManus, B. A. Menge, B. Gaylord, T. M. Hill, E. Sanford, M. LaVigne, J. M. Rose, L. Kapsenberg, and J. M. Dutton.. "Exploring local adaptation and the ocean acidification seascape ? studies in the California Current Large Marine Ecosystem.," <em>Biogeosciences Discussions</em>, v.10, 2013, p. 11825.</p>
<p>LaVigne, M. T.M. Hill, E. Sanford, B. Gaylord, A.D. Russell, E.A. Lenz, J.D. Hosfelt, M.K. Young.. "The elemental composition of purple sea urchin (Strongylocentrotus purpuratus) calcite and potential effects of pCO2 during early life stages.," <em>Biogeosciences</em>, v.10, 2013, p. 3465.</p>
<p>Pespeni, M.H., E. Sanford, B. Gaylord, T. M. Hill, J. D. Hosfelt, H. Jaris, M. LaVigne, E. A. Lenz, A. D. Russell, M. K. Young, S. R. Palumbi.. "Evolutionary change during experimental ocean acidification.," <em>Proceedings National Academy of Sciences</em>, v.110, 2013, p. 6937.</p>
OMEGAS-II
largerWorkCitation
project
eng; USA
oceans
Campus Point Goleta, CA 34.30 -119.84
2016-03-07
California Current Large Marine Ecosystem, Oregon, California
0
BCO-DMO catalogue of parameters from California mussel body size data for RNA-Seq project from UCSB Mussel Growth study from Hofmann laboratory at Campus Point, Goleta, CA in 2015 (OMEGAS-II project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/639778.rdf
Name: SITE
Units: text
Description: <p>Site Id</p>
http://lod.bco-dmo.org/id/dataset-parameter/639779.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude (South is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/639780.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude (West is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/639781.rdf
Name: sampleID
Units: text
Description: <p>sampleID</p>
<p>Where H refers to high CO2<br />
L= low CO2<br />
The number is bucket number<br />
And 'un' refers to the fact the cultures were unfiltered</p>
http://lod.bco-dmo.org/id/dataset-parameter/639782.rdf
Name: FAMILY
Units: text
Description: <p>FAMILY</p>
http://lod.bco-dmo.org/id/dataset-parameter/639783.rdf
Name: co2_treat
Units: text
Description: <p>co2 treatment</p>
http://lod.bco-dmo.org/id/dataset-parameter/639784.rdf
Name: max_diameter
Units: mm
Description: <p>max_diameter</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
20317
https://datadocs.bco-dmo.org/file/P66Gw2KIN35lg0/UCSB_MusselGrowth_Size.csv
UCSB_MusselGrowth_Size.csv
Primary data file for dataset ID 639731
download
https://osprey.bco-dmo.org/dataset/639731/data/download
download
onLine
dataset
<p>63h D-hinge larvae reared under 350µatm and 1300 µatm, described in: High pCO2 affects body size, but not gene expression in larvae of the California mussel (Mytilus californianus)</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing Notes</strong><br />
&nbsp;- Generated from original file: "Mussel size data for ICES JMS paper.xlsx" contributed by Gretchen Hofmann<br />
&nbsp;- Parameter names edited to conform to BCO-DMO naming convention found at <a href="http://usjgofs.whoi.edu/naming-guidelines.html" target="_blank">Choosing Parameter Name</a><br />
&nbsp;- Site and Lat/Lon of site added from published paper</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: Hofmann_CampusPoint_Goleta_CA
Hofmann_CampusPoint_Goleta_CA
CampusPoint_Goleta_CA
shoreside
Hofmann_CampusPoint_Goleta_CA
Gretchen E. Hofmann
University of California-Santa Barbara
CampusPoint_Goleta_CA
shoreside