http://lod.bco-dmo.org/id/dataset/645195
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-05-11
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
LTR - Thalassoma Surveys
2016-05-23
publication
2016-05-23
revision
BCO-DMO Linked Data URI
2016-05-23
creation
http://lod.bco-dmo.org/id/dataset/645195
Craig Osenberg
University of Georgia
principalInvestigator
Thomas Frazer
University of Florida
principalInvestigator
Jeffrey Shima
Victoria University of Wellington
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Osenberg, C., Shima, J., Frazer, T. (2016) LTR - Thalassoma Surveys. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 23 May 2016) Version Date 2016-05-23 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/645195 [access date]
Long Term Reefs Thalassoma Surveys Dataset Description: <p><em>Thalassoma</em> surveys were conducted from 2003-2007, 2009, 2012, and 2014. These surveys were conducted at each of 192 reefs. Beginning in 2012, reefs 129-144 and added reefs 193-198 were manipulated for a project studying the effects of vermetid removals; information pertaining to this manipulation can be found in the project “Spatial patterns of coral-vermetid interactions: short-term effects and long-term consequences”. All data collected on reefs 129-144 and 193-198 beginning in 2012 can also be found under that project. These reefs are characterized in the “Long Term Reef Physical Characteristics” dataset. <em>Thalassoma</em> surveys are meant to characterize size structure of <em>Thalassoma</em> and other fish species thought to affect <em>Thalassoma</em> dynamics. We ultimately hope to use the data on size structure and numbers of <em>Thalassoma</em> to infer settlement rates, growth rates and survival.</p>
<p><strong>Location:</strong> Moorea, French Polynesia (17.48 degrees S, 149.82 degrees W)</p> Methods and Sampling: <p><strong>Sampling and Analytical Methodology:</strong><br />
A single snorkeler approaches one of the 192 patch reefs (for size of reef, see “Physical Characteristics” dataset, each are ~ 1-8 m<sup>2</sup> in aerial extent) swam around it and attempted to recognize and estimate the size of all the <em>Thalassoma</em> on the reef. Large adults that were clearly attracted by the arrival of the snorkeler were ignored. We also estimated the number and size of resident <em>Gomphosus</em> <em>varius</em>, <em>Pseudocheilinus</em> <em>lineatus</em> all around the reef. Counts of small recruits of labrids and scarids were combined, excluding those three species. We also counted and identified species that we considered potential predators that were within ~ 3 meters of the reef for each patch reef. In 2012 settler counts were not completed.</p>
<p><strong>Materials:</strong> <strong> </strong>Data slate with photographs of <em>Thalassoma</em> of different size classes to help with the visual estimates at each site.</p>
<p><strong>Species Abbreviation Codes:</strong></p>
<pre>
AbbreviationCommon NameScientific name
bebbig eye emperorMonotaxis grandoculis
carcardinal fishApogon spp.
ftsflame-tail snapperLutjanus fulvus
lizlizardfishSaurida spp.
lnflionfishPterois spp. or Dendrochirus spp.
mryMorayGymnothorax spp. or Echidna spp. or Scuticaria spp.
mwmaori wrasseCheilinus spp.
solsoldierfishMyripristis spp.
spsand perchParapercis spp.
sqsquirellfishNeoniphon spp. or Sargocentron spp.
stnfStonefishSynanceia spp.
tpftrumpetfishAulostomus chinensis
ydbyellow dot breamGnathodentex aurolineatus
snpsnapperLutjanidae
carreccardinal fish recruitApogon spp.
mwjmaori wrasse juvenileCheilinus spp.
bebjbig eye bream juvenileMonotaxis grandoculis
soljsoldierfish juvenileMyripristis spp.
ydbjyellow dot bream juvenileGnathodentex aurolineatus
carjjuvenile cardinal fishApogon spp.
octoctopus
spotted mryspotted morayGymnothorax moringa or sp?
scorpaenidscorpaenid
pfrpufferfish/puffer/puffer fishArothron sp
cornet fishcornet fishFistularia commersonii
flounderflounderCanthigaster solandri or Arothon meleagris
box fishbox fishOstracion sp or Lactoria sp. (Ostraciidae)
breambreamnemipteridae
blck sqblack squirrelfishSargocentron spp
seabreamseabreamAcanthopargus sp? Or just Sparidae
razor fishrazor fishInsiitstius sp
checkerchecker wrasseRhinecanthus aculeatus
otoctopus maybe? Orange trigger?
blcktrigblack triggerMelichthys sp
arguspeacock wrasseHalichoeres argus
snowflake mrysnowflake morayEchidna nebulosa
longface emperorLongface emperorLethrinus olivaceus
clown corisClown corisCoris aygula
orange triggerOrange-lined triggerfishBalistapus undulatus
scythe triggerScythe triggerfishSufflamen bursa
checker wrasseCheckerboard wrasseHalichoeres hortulanus
picassoPicasso triggerfishRhinecanthus aculeatus
porcupinePorcupine fishDiodon sp
yellow anal fin snpsnapperLutjanus sp
yellow tail snpsnapperLutjanus sp
tripletailtriple tail wrasseCheilinus trilobatus
bw pufferBlack and white pufferfishArothron sp
uncertainuncertain if a settler? 2003 reefs 99, 110</pre>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0242312 Award URL: http://www.nsf.gov/awardsearch/showAward?AWD_ID=0242312
onGoing
Craig Osenberg
University of Georgia
706-713 2051
Odum School of Ecology University of Georgia
Athens
GA
30602
USA
osenberg@uga.edu
pointOfContact
Thomas Frazer
University of Florida
352-392 9230
PO Box 1116455
Gainesville
FL
32611
USA
frazer@ufl.edu
pointOfContact
Jeffrey Shima
Victoria University of Wellington
+64 4 463 6494
PO Box 600 Victoria University of Wellington
Wellington
6140
New Zealand
Jeffrey.Shima@vuw.ac.nz
pointOfContact
asNeeded
Dataset Version: 23 May 2016
Unknown
DATE
Observer
Time
Reef
Treatment
Species
Size
Number
No_Settlers
Predators
Notes
Transect Tape
Slate
Mask and snorkel
theme
None, User defined
date
person name
time of day
site
treatment
species
length
number
comments
featureType
BCO-DMO Standard Parameters
Measuring Tape
Underwater Writing Slate
Diving Mask and Snorkel
instrument
BCO-DMO Standard Instruments
Osenberg_et_al_Moorea
service
Deployment Activity
Moorea, French Polynesia (-17.48 degrees S, -149.82 degrees W)
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Cryptic density dependence: the effects of spatial, ontogenetic, and individual variation in reef fish
https://www.bco-dmo.org/project/540423
Cryptic density dependence: the effects of spatial, ontogenetic, and individual variation in reef fish
<p><em>Description from NSF award abstract:</em><br />
Ecologists have long been interested in the factors that drive spatial and temporal variability in population density and structure. In marine reef systems, attention has focused on the role of settlement-the transition of pelagic larvae to a benthic stage-and on density-dependent processes affecting recently settled juveniles. Recent data suggest that co-variance in settlement and subsequent density-dependent survival can obscure the patterns of density dependence at larger scales, a phenomenon called cryptic density dependence. This research will explore the mechanisms that underlie the spatial covariance of settlement and site quality - a process that has received little attention in the standard paradigm. These mechanistic studies of cryptic density dependence will facilitate the development of new frameworks for fish population dynamics that incorporate larval ecology, habitat quality, density dependence, life history, and the patterns and implications of spatial covariance among these factors. More generally, the work provides a specific empirical context, and a general theoretical treatment, of cryptic heterogeneity (hidden individual variation in demographic rates).</p>
<p><strong>Note: </strong>Drs. Craig W. Osenberg and Ben Bolker were at the University of Florida at the time the NSF award was granted. Dr. Osenberg moved to the University of Georgia during the summer of 2014 (<a href="http://www.bco-dmo.org/person/540414" target="_blank">current contact information</a>). Dr. Bolker moved to McMaster University in 2010 (<a href="http://www.bco-dmo.org/person/540425" target="_blank">current contact information</a>).</p>
CDD_in_Reef_Fish
largerWorkCitation
project
eng; USA
oceans
Moorea, French Polynesia (-17.48 degrees S, -149.82 degrees W)
2016-05-23
Moorea, French Polynesia (-17.48, -149.82)
0
BCO-DMO catalogue of parameters from LTR - Thalassoma Surveys
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/645207.rdf
Name: DATE
Units: DD-MMM-YYYY
Description: date of data observation
http://lod.bco-dmo.org/id/dataset-parameter/645208.rdf
Name: Observer
Units: text
Description: name of observer (name of observer (Jeff Shima; Sean Geange; Craig W. Osenberg; Jada S. White; Colette St. Mary; Chris McDermot); (JS; Geange; CWO; White; JSW; CSTM; CMcD; LR; Kindsvater)
http://lod.bco-dmo.org/id/dataset-parameter/645209.rdf
Name: Time
Units: HH:MM
Description: time of begin observation period for site
http://lod.bco-dmo.org/id/dataset-parameter/645210.rdf
Name: Reef
Units: dimensionless
Description: Number corresponding to reef ID
http://lod.bco-dmo.org/id/dataset-parameter/645213.rdf
Name: Treatment
Units: NA
Description: Treatment (does not apply to this data set)
http://lod.bco-dmo.org/id/dataset-parameter/645214.rdf
Name: Species
Units: text
Description: Species or category
http://lod.bco-dmo.org/id/dataset-parameter/645215.rdf
Name: Size
Units: mm
Description: visual estimate of length
http://lod.bco-dmo.org/id/dataset-parameter/645216.rdf
Name: Number
Units: number of individuals
Description: number of individuals of given species/length
http://lod.bco-dmo.org/id/dataset-parameter/645217.rdf
Name: No_Settlers
Units: number of individuals
Description: number of new settlers
http://lod.bco-dmo.org/id/dataset-parameter/645218.rdf
Name: Predators
Units: number of individuals
Description: Also gives ID of "other predators"; as per abbreviation codes listed below
http://lod.bco-dmo.org/id/dataset-parameter/645219.rdf
Name: Notes
Units: text
Description: free text notes corresponding to observation; site; date; etc; Also gives ID of "other predators"; as per abbreviation codes listed in Aquisition decription
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
3749580
https://datadocs.bco-dmo.org/file/oAAmBpQIvB9kVk/LTR_ThalassomaSurveys.csv
LTR_ThalassomaSurveys.csv
Primary data file for dataset ID 645195
download
https://www.bco-dmo.org/dataset/645195/data/download
download
onLine
dataset
<p><strong>Sampling and Analytical Methodology:</strong><br />
A single snorkeler approaches one of the 192 patch reefs (for size of reef, see “Physical Characteristics” dataset, each are ~ 1-8 m<sup>2</sup> in aerial extent) swam around it and attempted to recognize and estimate the size of all the <em>Thalassoma</em> on the reef. Large adults that were clearly attracted by the arrival of the snorkeler were ignored. We also estimated the number and size of resident <em>Gomphosus</em> <em>varius</em>, <em>Pseudocheilinus</em> <em>lineatus</em> all around the reef. Counts of small recruits of labrids and scarids were combined, excluding those three species. We also counted and identified species that we considered potential predators that were within ~ 3 meters of the reef for each patch reef. In 2012 settler counts were not completed.</p>
<p><strong>Materials:</strong> <strong> </strong>Data slate with photographs of <em>Thalassoma</em> of different size classes to help with the visual estimates at each site.</p>
<p><strong>Species Abbreviation Codes:</strong></p>
<pre>
AbbreviationCommon NameScientific name
bebbig eye emperorMonotaxis grandoculis
carcardinal fishApogon spp.
ftsflame-tail snapperLutjanus fulvus
lizlizardfishSaurida spp.
lnflionfishPterois spp. or Dendrochirus spp.
mryMorayGymnothorax spp. or Echidna spp. or Scuticaria spp.
mwmaori wrasseCheilinus spp.
solsoldierfishMyripristis spp.
spsand perchParapercis spp.
sqsquirellfishNeoniphon spp. or Sargocentron spp.
stnfStonefishSynanceia spp.
tpftrumpetfishAulostomus chinensis
ydbyellow dot breamGnathodentex aurolineatus
snpsnapperLutjanidae
carreccardinal fish recruitApogon spp.
mwjmaori wrasse juvenileCheilinus spp.
bebjbig eye bream juvenileMonotaxis grandoculis
soljsoldierfish juvenileMyripristis spp.
ydbjyellow dot bream juvenileGnathodentex aurolineatus
carjjuvenile cardinal fishApogon spp.
octoctopus
spotted mryspotted morayGymnothorax moringa or sp?
scorpaenidscorpaenid
pfrpufferfish/puffer/puffer fishArothron sp
cornet fishcornet fishFistularia commersonii
flounderflounderCanthigaster solandri or Arothon meleagris
box fishbox fishOstracion sp or Lactoria sp. (Ostraciidae)
breambreamnemipteridae
blck sqblack squirrelfishSargocentron spp
seabreamseabreamAcanthopargus sp? Or just Sparidae
razor fishrazor fishInsiitstius sp
checkerchecker wrasseRhinecanthus aculeatus
otoctopus maybe? Orange trigger?
blcktrigblack triggerMelichthys sp
arguspeacock wrasseHalichoeres argus
snowflake mrysnowflake morayEchidna nebulosa
longface emperorLongface emperorLethrinus olivaceus
clown corisClown corisCoris aygula
orange triggerOrange-lined triggerfishBalistapus undulatus
scythe triggerScythe triggerfishSufflamen bursa
checker wrasseCheckerboard wrasseHalichoeres hortulanus
picassoPicasso triggerfishRhinecanthus aculeatus
porcupinePorcupine fishDiodon sp
yellow anal fin snpsnapperLutjanus sp
yellow tail snpsnapperLutjanus sp
tripletailtriple tail wrasseCheilinus trilobatus
bw pufferBlack and white pufferfishArothron sp
uncertainuncertain if a settler? 2003 reefs 99, 110</pre>
Specified by the Principal Investigator(s)
<p><strong>Data Processing: </strong></p>
<p><strong>Calculations:</strong> Note: data were entered into excel and then restructured with a macro to create the final data set. Because of this data entry method there maybe two similar entries. (e.g., if there were two fish of species or type X that were the same size (Y), they would each be on the final data sheet as Fish X, Size Y, count: 1, instead of Fish X and Y size count: 2)</p>
<p><strong>BCO-DMO Processing Notes</strong><br />
- Generated from original file "LTR_ThalassomaSurveys.csv" contributed by Rebecca Atkins<br />
- Parameter names edited to conform to BCO-DMO naming convention found at <a href="http://usjgofs.whoi.edu/naming-guidelines.html" target="_blank">Choosing Parameter Name</a><br />
- Any blank rows removed</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Transect Tape
Transect Tape
PI Supplied Instrument Name: Transect Tape PI Supplied Instrument Description:Materials: transect tape and slates Instrument Name: Measuring Tape Instrument Short Name: Instrument Description: A tape measure or measuring tape is a flexible ruler. It consists of a ribbon of cloth, plastic, fibre glass, or metal strip with linear-measurement markings. It is a common tool for measuring distance or length.
Slate
Slate
PI Supplied Instrument Name: Slate PI Supplied Instrument Description:Materials: transect tape and slates Instrument Name: Underwater Writing Slate Instrument Short Name: Instrument Description: Underwater writing slates and pencils are used to transport pre-dive plans underwater, to record facts whilst underwater and to aid communication with other divers.
Mask and snorkel
Mask and snorkel
PI Supplied Instrument Name: Mask and snorkel Instrument Name: Diving Mask and Snorkel Instrument Short Name: Instrument Description: A diving mask (also half mask, dive mask or scuba mask) is an item of diving equipment that allows underwater divers, including, scuba divers, free-divers, and snorkelers to see clearly underwater.
Snorkel: A breathing apparatus for swimmers and surface divers that allows swimming or continuous use of a face mask without lifting the head to breathe, consisting of a tube that curves out of the mouth and extends above the surface of the water.
Deployment: Osenberg_et_al_Moorea
Osenberg_et_al_Moorea
Osenberg et al Moorea
Osenberg_et_al_Moorea
Craig Osenberg
University of Georgia
Osenberg et al Moorea