http://lod.bco-dmo.org/id/dataset/645524
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-05-17
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Results from experiment examining Zostera marina genotype response to warming from the Bodega Marine Laboratory
2016-05-17
publication
2016-05-17
revision
BCO-DMO Linked Data URI
2016-05-17
creation
http://lod.bco-dmo.org/id/dataset/645524
John J. Stachowicz
University of California-Davis
principalInvestigator
Richard K. Grosberg
University of California-Davis
principalInvestigator
Susan L. Williams
University of California - Davis: Bodega Marine Laboratory
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Stachowicz, J. J., Grosberg, R. K., Williams, S. L. (2016) Results from experiment examining Zostera marina genotype response to warming from the Bodega Marine Laboratory. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 17 May 2016) Version Date 2016-05-17 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/645524 [access date]
Experiment examining Zostera marina genotype response to warming. Dataset Description: <p>Zostera&nbsp;marina genotype-specific traits after transplantation, a 5-week warming event, and a 5-week recovery.</p>
<p>The experiment is described in:<br />
Reynolds LK, DuBois K, Abbott JM, Williams SL, Stachowicz JJ (2016) Response of a Habitat-Forming Marine Plant to a Simulated Warming Event Is Delayed, Genotype Specific, and Varies with Phenology. PLoS ONE 11(6): e0154532. doi:<a href="http://dx.doi.org/10.1371/journal.pone.0154532" target="_blank">10.1371/journal.pone.0154532</a></p> Methods and Sampling: <p>The experiment is described in:<br />
Reynolds LK, DuBois K, Abbott JM, Williams SL, Stachowicz JJ (2016) Response of a Habitat-Forming Marine Plant to a Simulated Warming Event Is Delayed, Genotype Specific, and Varies with Phenology. PLoS ONE 11(6): e0154532. doi:<a href="http://dx.doi.org/10.1371/journal.pone.0154532" target="_blank">10.1371/journal.pone.0154532</a></p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1234345 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1234345
completed
John J. Stachowicz
University of California-Davis
530-752-1113
Department of Evolution and Ecology 1 Shields Ave
Davis
CA
95616
USA
jjstachowicz@ucdavis.edu
pointOfContact
Richard K. Grosberg
University of California-Davis
Department of Ecology and Evolution 1 Shields Ave
Davis
CA
95616
USA
rkgrosberg@ucdavis.edu
pointOfContact
Susan L. Williams
University of California - Davis: Bodega Marine Laboratory
707-875-1950
Bodega Marine Laboratory P.O. Box 247
Bodega Bay
CA
94923
USA
slwilliams@ucdavis.edu
pointOfContact
asNeeded
Dataset Version: 17 May 2016
Unknown
time_point
treatment
genotype
bin
shootpro_grams
leafpro_grams
shootpro
leafpro
rhizome_len
above_below
max_leaf_len
sheath_width
leaves
DA_yield
alpha
ETR_max
NO3
theme
None, User defined
time_point
treatment
No BCO-DMO term
alpha
Electron Transport Rate (ETR)
Nitrate
featureType
BCO-DMO Standard Parameters
BML_Stachowicz
service
Deployment Activity
Bodega Marine Lab
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Connecting genetic diversity to ecosystem functioning: links between genetic diversity, relatedness and trait variation in a seagrass community
https://osprey.bco-dmo.org/project/564447
Connecting genetic diversity to ecosystem functioning: links between genetic diversity, relatedness and trait variation in a seagrass community
<p>There is growing evidence that genetic variation within and among populations of key species plays an important role in marine ecosystem processes. Several experiments provide compelling evidence that the number of genotypes in an assemblage (genotypic richness) can influence critical ecosystem functions including productivity, resistance to disturbance and invasion or colonization success. However, these studies use only the number of genotypes as a measure of genetic diversity. Recent analyses of species diversity experiments show that phylogenetic diversity may be a more reliable predictor of ecosystem functioning than simply the number of species. However, such approaches have not yet been applied to understanding the effects of genetics on ecosystem functioning. While genetic relatedness within a species holds the potential to predict the outcome of intraspecific interactions, and the functioning of ecosystems that depend on those species, we currently have few data to assess the shape or strength of this relationship. The investigators will build on their own previous work, and that of others, in eelgrass (<em>Zostera marina</em>) ecosystems showing strong effects of genotypic richness on a spectrum of critical ecosystem processes. The investigators will ask whether genotypic richness, or - as in studies at the level of species diversity - genetic relatedness/distance better predicts ecosystem functioning? If genetic relatedness measures are better predictors, then what mechanisms underlie this relationship? Can genetic relatedness predict ecological relatedness?</p>
<p>Although the current focus is on eelgrass, the research should be applicable to many systems. The project will assess the relationship between genetic relatedness and phenotypic distinctiveness of a key marine foundation species and use manipulative experiments to test the relative importance of the number of genotypes in an assemblage vs. their genetic relatedness and trait diversity for ecosystem functioning. Specifically, experiments will:<br />
(1) characterize the relationship between genetic relatedness and trait similarity among individual genotypes of eelgrass, including responses to experimental warming;<br />
(2) compare the effects of genetic relatedness and trait similarity among genotypes on the outcome of intraspecific competitive interactions; and<br />
(3) test the relative effect of genetic relatedness vs. number of genotypes of eelgrass on the growth of eelgrass, its associated ecosystem functions it (e.g., primary production, nutrient dynamics, trophic transfer, habitat provision, and detrital production and decomposition).</p>
<p>Seagrass ecosystems provide important services to coastal regions including primary production, nutrient cycling, habitat for fisheries species, and erosion control. Previous studies have shown these services can be compromised by reduction in the numbers of species of grazers or genotypes, but this study will allow a more predictive approach to diversity loss by integrating the effects of multiple components of diversity and clarifying the extent to which diversity effects can be predicted by the genetic or ecological uniqueness of component genotypes.</p>
Genetic Div to Ecosys Functioning
largerWorkCitation
project
eng; USA
biota
oceans
Bodega Marine Lab
2016-05-17
0
BCO-DMO catalogue of parameters from Results from experiment examining Zostera marina genotype response to warming from the Bodega Marine Laboratory
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/645533.rdf
Name: time_point
Units: dimensionless
Description: <p>Time point of sampling: after acclimation (1), a 5 week warming event (2), and after a 5 week recovery (3).</p>
http://lod.bco-dmo.org/id/dataset-parameter/645534.rdf
Name: treatment
Units: dimensionless
Description: <p>Treatment type: Warm vs Control.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645535.rdf
Name: genotype
Units: dimensionless
Description: <p>Individual clone.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645536.rdf
Name: bin
Units: dimensionless
Description: <p>Replicate mesocosm.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645537.rdf
Name: shootpro_grams
Units: grams (g)
Description: <p>Biomass of new shoots produced (cumulative over time).</p>
http://lod.bco-dmo.org/id/dataset-parameter/645538.rdf
Name: leafpro_grams
Units: grams per day (g day-1)
Description: <p>Leaf biomass productivity measured with the marking technique.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645539.rdf
Name: shootpro
Units: counts
Description: <p>Number of new shoots produced (cumulative over time).</p>
http://lod.bco-dmo.org/id/dataset-parameter/645540.rdf
Name: leafpro
Units: square centimeters per day (cm2 day-1)
Description: <p>Leaf area productivity measured with the marking technique.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645541.rdf
Name: rhizome_len
Units: centimeters (cm)
Description: <p>Cumulative rhizome length.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645542.rdf
Name: above_below
Units: dimensionless
Description: <p>Above to below ground biomass ratio.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645543.rdf
Name: max_leaf_len
Units: centimeters (cm)
Description: <p>Maximum leaf length of terminal shoot.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645544.rdf
Name: sheath_width
Units: centimeters (cm)
Description: <p>Maximum leaf width of terminal shoot at the top of the sheath.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645545.rdf
Name: leaves
Units: count
Description: <p>Number of leaves on the terminal shoot.</p>
http://lod.bco-dmo.org/id/dataset-parameter/645546.rdf
Name: DA_yield
Units: dimensionless
Description: <p>Terminal shoot Dark adapted yield (FV/Fm measured by Pulse Amplitude Modulation).</p>
http://lod.bco-dmo.org/id/dataset-parameter/645547.rdf
Name: alpha
Units: dimensionless
Description: <p>Terminal shoot alpha (the initial slope of the curve—a measure of light harvesting efficiency by Pulse Amplitude Modulation).</p>
http://lod.bco-dmo.org/id/dataset-parameter/645548.rdf
Name: ETR_max
Units: dimensionless
Description: <p>Terminal shoot ETRMAX (the asymptote of the curve—a measure of photosystem capacity to use absorbed light by Pulse Amplitude Modulation).</p>
http://lod.bco-dmo.org/id/dataset-parameter/645549.rdf
Name: NO3
Units: micromoles per gram per minute (micromol g-1 min-1)
Description: <p>Terminal shoot nitrate uptake rate normalized to plant biomass.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
23963
https://datadocs.bco-dmo.org/file/QAAXxZnS97DD9E/warming_experiment.csv
warming_experiment.csv
Primary data file for dataset ID 645524
download
https://osprey.bco-dmo.org/dataset/645524/data/download
download
onLine
dataset
<p>The experiment is described in:<br />
Reynolds LK, DuBois K, Abbott JM, Williams SL, Stachowicz JJ (2016) Response of a Habitat-Forming Marine Plant to a Simulated Warming Event Is Delayed, Genotype Specific, and Varies with Phenology. PLoS ONE 11(6): e0154532. doi:<a href="http://dx.doi.org/10.1371/journal.pone.0154532" target="_blank">10.1371/journal.pone.0154532</a></p>
Specified by the Principal Investigator(s)
<p>BCO-DMO processing:<br />
- modified parameter names to conform with BCO-DMO naming conventions;<br />
- replaced "." with "nd" (missing data/no data);<br />
- rounded columns to 2 decimal places: leafpro_grams, leafpro, above_below, alpha, ETR_max, NO3.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: BML_Stachowicz
BML_Stachowicz
lab Bodega Marine Laboratory
laboratory
BML_Stachowicz
John J. Stachowicz
University of California-Davis
lab Bodega Marine Laboratory
laboratory