http://lod.bco-dmo.org/id/dataset/659440
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-09-20
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Sample logs from R/V Atlantis (AT26-14) Alvin dives in the Gulf of Mexico during 2014 (Lophelia OA project)
2016-09-20
publication
2016-09-20
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-04-24
publication
https://doi.org/10.1575/1912/bco-dmo.659440.1
Erik E. Cordes
Temple University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Cordes, E. (2016) Sample logs from R/V Atlantis (AT26-14) Alvin dives in the Gulf of Mexico during 2014 (Lophelia OA project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2016-09-20 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.659440.1 [access date]
Sample logs for R/V Atlantis (AT26-14) Alvin dives in 2014. Dataset Description: <p>Sample logs from HOV Alvin dives (AL4704-AL4716) on R/V Atlantis (AT26-14) between April - May 2014 in the Gulf of Mexico.</p> Methods and Sampling: <p>Sample logs were acquired for each dive. UTM coordinates, lat/lons,&nbsp;depths, and sampling descriptions are included.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1220478 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1220478
completed
Erik E. Cordes
Temple University
215-204-8876
Temple University Biology-Life Sciences 315
Philadelphia
PA
19122
USA
ecordes@temple.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
dive
sampleLog_date
sampleLog_time
sampleLog_seconds
sampleLog_sample
sampleLog_location
sampleLog_pump
sampleLog_species
sampleLog_notes
time
lat
lon
utmx
utmy
depth
time_sec
Pump
Niskin
theme
None, User defined
dive_id
date
time of day
seconds_local
sample identification
site
species scientific name (binomial)
comments
latitude
longitude
utm_coordinate
depth
featureType
BCO-DMO Standard Parameters
HOV Alvin Slurp Samplers
Niskin bottle
instrument
BCO-DMO Standard Instruments
AT26-14
AT26-14_Alvin_Dives
service
Deployment Activity
Gulf of Mexico
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
Physiological and genetic responses of the deep-water coral, Lophelia pertusa, to ongoing ocean acidification in the Gulf of Mexico
https://osprey.bco-dmo.org/project/2224
Physiological and genetic responses of the deep-water coral, Lophelia pertusa, to ongoing ocean acidification in the Gulf of Mexico
<p>The Gulf of Mexico deep water ecosystems are threatened by the persistent threat of ocean acidification. Deep-water corals will be among the first to feel the effects of this process, in particular the deep-water scleractinians that form their skeleton from aragonite. The continued shoaling of the aragonite saturation horizon (the depth below which aragonite is undersaturated) will place many of the known, and as yet undiscovered, deep-water corals at risk in the very near future. The most common deep-water framework-forming scleractinian in the world's oceans is <em>Lophelia pertusa</em>. This coral is most abundant in the North Atlantic, where aragonite saturation states are relatively high, but it also creates extensive reef structures between 300 and 600 m depth in the Gulf of Mexico where aragonite saturation states were previously unknown. Preliminary data indicate that pH at this depth range is between 7.85 and 8.03, and the aragonite saturation state is typically between 1.28 and 1.69. These are the first measurements of aragonite saturation state for the deep Gulf of Mexico, and are among the lowest Aragonite saturation state yet recorded for framework-forming corals in any body of water, at any depth.</p>
<p>This project will examine the effects of ocean acidification on<em> L. pertusa</em>, combining laboratory experiments, rigorous oceanographic measurements, the latest genome and transcriptome sequencing platforms, and quantitative PCR and enzyme assays to examine changes in coral gene expression and enzyme activity related to differences in carbonate chemistry. Short-term and long-term laboratory experiments will be performed at Aragonite saturation state of 1.45 and 0.75 and the organismal (e.g., survivorship and calcification rate) and genetic (e.g., transcript abundance) responses of the coral will be monitored. Genomic DNA and RNA will be extracted, total mRNA purified, and comprehensive and quantitative profiles of the transcriptome generated using a combination of 454 and Illumina sequencing technologies. Key genes in the calcification pathways as well as other differentially expressed genes will be targeted for specific qPCR assays to verify the Illumina sequencing results. On a research cruise,<em> L. pertusa</em> will be sampled (preserved at depth) along a natural gradient in carbonate chemistry, and included in the Illumina sequencing and qPCR assays. Water samples will be obtained by submersible-deployed niskin bottles adjacent to the coral collections as well as CTD casts of the water column overlying the sites. Water samples will be analyzed for pH, alkalinity, nitrates and soluble reactive phosphorus. These will be used in combination with historical data in a model to hindcast Aragonite saturation state.</p>
<p>This project will provide new physiological and genetic data on an ecologically-significant and anthropogenically-threatened deepwater coral in the Gulf of Mexico. An experimental system, already developed by the PIs, offers controlled conditions to test the effect of Aragonite saturation state on calcification rates in scleractinians and, subsequently, to identify candidate genes and pathways involved in the response to reduced pH and Aragonite saturation state. Both long-term and population sampling experiments will provide additional transcriptomic data and specifically investigate the expression of the candidate genes. These results will contribute to our understanding of the means by which scleractinians may acclimate and acclimatize to low pH, alkalinity, and Aragonite saturation state. Furthermore, the investigators will continue a time series of oceanographic measurements of the carbonate system in the Gulf of Mexico, which will allow the inclusion of this significant body of water in models of past and future ocean acidification scenarios.</p>
Lophelia OA
largerWorkCitation
project
eng; USA
oceans
Gulf of Mexico
-93.59891607
-88.0120774
27.08029275
29.17450947
2014-04-30
2014-05-14
Northern Gulf of Mexico
0
BCO-DMO catalogue of parameters from Sample logs from R/V Atlantis (AT26-14) Alvin dives in the Gulf of Mexico during 2014 (Lophelia OA project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/659457.rdf
Name: dive
Units: unitless
Description: <p>Dive ID number</p>
http://lod.bco-dmo.org/id/dataset-parameter/659458.rdf
Name: sampleLog_date
Units: unitless
Description: <p>Date sample was taken; mm/dd/yy</p>
http://lod.bco-dmo.org/id/dataset-parameter/659459.rdf
Name: sampleLog_time
Units: unitless
Description: <p>Time sample was taken; HH:MM</p>
http://lod.bco-dmo.org/id/dataset-parameter/659460.rdf
Name: sampleLog_seconds
Units: seconds
Description: <p>Seconds into dive sampling occurs; SSSSS</p>
http://lod.bco-dmo.org/id/dataset-parameter/659462.rdf
Name: sampleLog_sample
Units: unitless
Description: <p>Sampling method</p>
http://lod.bco-dmo.org/id/dataset-parameter/659463.rdf
Name: sampleLog_location
Units: unitless
Description: <p>Sampling location</p>
http://lod.bco-dmo.org/id/dataset-parameter/659464.rdf
Name: sampleLog_pump
Units: unitless
Description: <p>Sampling pump; on or off</p>
http://lod.bco-dmo.org/id/dataset-parameter/659465.rdf
Name: sampleLog_species
Units: unitless
Description: <p>Species sampled</p>
http://lod.bco-dmo.org/id/dataset-parameter/659466.rdf
Name: sampleLog_notes
Units: unitless
Description: <p>Notes on sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/659468.rdf
Name: time
Units: unitless
Description: <p>Time sample was taken as it occurs in footage; HH:MM:SS</p>
http://lod.bco-dmo.org/id/dataset-parameter/659469.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/659470.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/659471.rdf
Name: utmx
Units: meters
Description: <p>Universal Transverse Mercator coordinate system X coordinates</p>
http://lod.bco-dmo.org/id/dataset-parameter/659472.rdf
Name: utmy
Units: meters
Description: <p>Universal Transverse Mercator coordinate system Y coordinates</p>
http://lod.bco-dmo.org/id/dataset-parameter/659473.rdf
Name: depth
Units: meters
Description: <p>Depth of sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/659474.rdf
Name: time_sec
Units: seconds
Description: <p>Seconds into dive the start of sampling occurs</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
54301
https://darchive.mblwhoilibrary.org/bitstream/1912/24074/1/dataset-659440_at26-14-alvin-sample-logs__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.659440.1
download
onLine
dataset
<p>Sample logs were acquired for each dive. UTM coordinates, lat/lons,&nbsp;depths, and sampling descriptions are included.</p>
Specified by the Principal Investigator(s)
<p><strong><span style="font-size:14px">Data Management Office Processing Notes:</span></strong><br />
<span style="font-size:14px"><span style="color:rgb(0, 0, 0); font-family:helvetica,arial,sans-serif">-Combined separate deployment files into one table.</span><br />
<span style="color:rgb(0, 0, 0); font-family:helvetica,arial,sans-serif">-Re-formatted column names to comply with BCO-DMO naming standards.&nbsp;</span></span></p>
<div>&nbsp;</div>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Pump
Pump
PI Supplied Instrument Name: Pump PI Supplied Instrument Description:Pump used to collect samples from seafloor or water column Instrument Name: HOV Alvin Slurp Samplers Instrument Short Name: Instrument Description: Small and large capacity vacuum pump samplers. May have single or multiple chambers.
Slurp Samplers (from https://ndsf.whoi.edu/alvin/systems/)
The slurp samplers consist of a collection chamber and a hydraulically powered water pump. A nozzle with a tube connected to it is held and moved by a manipulator while water is pulled into the nozzle by the pump. The water travels down the tube into the collection chamber, and then goes through a mesh screen before going through the pump itself. Biological samples are sucked into the nozzle and deposited in the collection chamber. They are kept from going into the pump by the mesh screen. The screen can be changed for coarser or finer mesh as needed. Two styles of collection chamber are available; single chamber and 5-chamber.
Single chamber: a large cylindrical single collection chamber into which all samples will be deposited. Water weight 2 lbs, 27 lbs full of water.
5-chamber: five separate cylindrical collection chambers of 4.5 inch ID x 11.5 inch height. One chamber is used at a time and the chambers are rotated by a hydraulic actuator mounted to the bottom of the 5-chamber assembly. Water weight 10 lbs, 140 lbs full of water.
Niskin
Niskin
PI Supplied Instrument Name: Niskin PI Supplied Instrument Description:Used to collect water samples Instrument Name: Niskin bottle Instrument Short Name:Niskin bottle Instrument Description: A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/
Cruise: AT26-14
AT26-14
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT26-14
Erik E. Cordes
Temple University
Deployment: AT26-14_Alvin_Dives
AT26-14_Alvin_Dives
HOV Alvin
Community Standard Description
International Council for the Exploration of the Sea
HOV Alvin
submarine-manned
AT26-14_Alvin_Dives
Erik E. Cordes
Temple University
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
HOV Alvin
Community Standard Description
International Council for the Exploration of the Sea
HOV Alvin
submarine-manned