http://lod.bco-dmo.org/id/dataset/659743
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-09-26
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Log of Jason Dives from cruise TN293 at the Loihi Seamount in March 2013
2016-09-26
publication
2016-09-26
revision
BCO-DMO Linked Data URI
2016-09-26
creation
http://lod.bco-dmo.org/id/dataset/659743
Craig L. Moyer
Western Washington University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Moyer, C. L. (2016) Log of Jason Dives from cruise TN293 at the Loihi Seamount in March 2013. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 26 Sept 2016) Version Date 2016-09-26 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/659743 [access date]
Log of Jason Dives from cruise TN293 at the Loihi Seamount in March 2013 Dataset Description: <p>This dataset provides metadata for all significant sample collections on the deployment, TN293. Date and time are in GMT. Location coordinates are based on the nav that the Jason team places before deployment (GPS coordinates are available through the virtual van website at&nbsp;<a href="http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html" target="_blank">http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html</a>)</p> Methods and Sampling:
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1155756 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1155756
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1155754 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1155754
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1155290 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1155290
completed
Craig L. Moyer
Western Washington University
516 High Street Dept. of Biology MS#9160
Bellingham
WA
98225
USA
Craig.Moyer@wwu.edu
pointOfContact
asNeeded
Dataset Version: 26 Sept 2016
Unknown
ISO_DateTime_UTC
dive
location
x
y
z
heading
depth
sample_name
sample_type
sample_details
theme
None, User defined
ISO_DateTime_UTC
dive_id
site
xpos
ypos
No BCO-DMO term
heading of vehicle
depth
sample identification
sample type
sample description
featureType
BCO-DMO Standard Parameters
ROV Jason
instrument
BCO-DMO Standard Instruments
TN293
service
Deployment Activity
Loihi Seamount, Hawaii
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Ecology of microbial mats at seamount associated Fe-rich hydrothermal vent systems
http://oceanexplorer.noaa.gov/explorations/14fire/welcome.html
Ecology of microbial mats at seamount associated Fe-rich hydrothermal vent systems
<p><em>Description from NSF award abstract:</em><br />
A grand challenge in microbial ecology is to understand what drives the structure of microbial communities. A recently discovered novel class of Proteobacteria, the Zetaproteobacteria, are associated with microbial mats at iron rich hydrothermal vents at submarine volcanoes deep in the ocean. These bacteria only grow using iron as an energy source and fix carbon dioxide. Within iron rich microbial mats, Zetaproteobacteria are the dominant bacterial population; however they are rare in most other deep-sea or marine habitats, suggesting they may be restricted to specific niches characterized by gradients of oxygen and iron. Recent discoveries have expanded their range to fluids collected from deep ocean crust boreholes, iron deposits in coastal saltmarshes, and with steel associated bio-corrosion, demonstrating that marine Zetaproteobacteria are cosmopolitan. A unique property of these marine iron oxidizing bacteria is that they produce morphologically distinct iron oxide structures in the form of filamentous sheaths or stalk-like structures. These structures are easily recognized by light microscopy, and electron microscopy is beginning to reveal subtle differences among them that may be diagnostic of different populations of iron oxidizing bacteria. Another unusual aspect of iron oxidizing bacteria is that they produce large quantities of oxides with relatively little bacterial biomass. As a result, the oxides form a matrix that influences water and nutrient flow in the microbial mats where they grow, and in turn, may influence the growth of other groups of bacteria and archaea that live in the mats. In an ecological context, the PIs believe this makes them a keystone species that form the predominant structural matrix of the mat, and engineer an environment conducive for growth of specific bacterial populations within the mat ecosystem. The PIs propose to use high resolution mat sampling techniques to investigate the architecture of mat ecosystems and couple these with modern molecular methods (i.e., single-cell metagenomics) and geochemical measurements of the vent fluid to couple morphological and functional diversity to phylogenetic and physiological diversity. Because the Zetaproteobacteria are ancient, have unique metabolic and morphological attributes, and appear to be restricted to a well-defined habitat, they offer an interesting model for understanding fundamental ecological concepts that drive microbial diversity and evolution.</p>
<p>A better understanding of iron oxidizing bacteria that include Zetaproteobacteria is of fundamental interest to scientists interested in areas of earth science and oceanography because they illustrate how microbes can fundamentally influence geochemical cycling and mineral deposition. Furthermore, morphological structures similar to those produced by Zetaproteobacteria can still be identified hundreds of millions (and possibly billions) of years back in the geological record, making them of paleontological, and potentially of exobiological, interest. As knowledge of extant populations grow, it is possible they will also help to inform us of environmental change in past Earth history. A wealth of educational and outreach opportunities will be made possible by this work, including graduate and postdoctoral education, research experiences for undergraduates, and teacher training. In addition the participating scientists are involved in a number of programs to make the general public aware of the process of how scientific research is conducted, and how discoveries of a fundamental nature can ultimately benefit humankind.</p>
<p><strong>Additional information/resources:</strong><br />
<strong>TN293 (Loihi 2013)</strong><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Ecology_of_Vent_Mats/Loihi_Summit_Map.pdf">Loihi Summit Map (PDF)</a><br />
Cruise blog: <a href="https://zetahunters.wordpress.com/" target="_blank">https://zetahunters.wordpress.com/</a><br />
Jason Virtual Control Van: <a href="http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html" target="_blank">http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html</a></p>
<p><em>Related Publications:</em><br />
<span style="font-family:helvetica,arial,sans-serif"><em><strong>Fullerton</strong></em>, H., K. W. Hager, S. M. McAllister, and C. L. Moyer. 2017. Hidden diversity revealed by genome-resolved metagenomics of iron-oxidizing microbial mats from L<span style="font-family:helvetica">ō</span>’ihi Seamount, Hawai’i. ISMEJ 11:1900–1914. doi:<a href="http://dx.doi.org/10.1038/ismej.2017.40" target="_blank">10.1038/ismej.2017.40</a></span><br />
<strong><em>Emerson</em></strong>, D., J. J. Scott, A. Leavitt, E. Fleming, and C. L. Moyer. 2016. In situ estimates of iron-oxidation and accretion rates for iron-oxidizing bacterial mats at Loihi Seamount. bioRxiv 095414. doi:<a href="http://dx.doi.org/10.1101/095414" target="_blank">10.1101/095414</a><br />
<em><strong>Scott</strong></em>, J. J., B. T. Glazer, and D. Emerson. 2017. Bringing microbial diversity into focus: high-resolution analysis of iron mats from the L<span style="font-family:helvetica">ō</span>’ihi Seamount. Environmental Microbiology 19:301–316. doi:<a href="http://dx.doi.org/10.1111/1462-2920.13607" target="_blank">10.1111/1462-2920.13607</a><br />
<em><strong>Chan</strong></em>, C.S., S.M. McAllister, A.H. Leavitt, B.T. Glazer, S.T. Krepski, and D. Emerson. 2016. The architecture of iron microbial mats reflects the adaptation of chemolithotrophic iron oxidation in freshwater and marine environments. Frontiers in Microbiology 7:796. doi:<a href="http://dx.doi.org/10.3389/fmicb.2016.00796" target="_blank">10.3389/fmicb.2016.00796</a><br />
<strong><em>Fullerton</em></strong>, H., K. W. Hager, and C. L. Moyer. 2015. Draft genome sequence of Mariprofundus ferrooxydans strain JV-1, isolated from Loihi Seamount, Hawaii. Genome announcements 3:e01118-15. doi:<a href="http://dx.doi.org/10.1128/genomeA.01118-15" target="_blank">10.1128/genomeA.01118-15</a><br />
<em><strong>Field</strong></em>, E.K., A. Sczyrba, A.E. Lyman, C.C. Harris, T. Woyke, R. Stepanauskas, and D. Emerson. 2015. Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount. ISMEJ 9:857–870. doi:<a href="http://dx.doi.org/10.1038/ismej.2014.183" target="_blank">10.1038/ismej.2014.183</a><br />
<em><strong>Jesser,</strong></em> KJ, Fullerton H, Hager KW, Moyer CL. 2015. Quantitative PCR analysis of functional genes in iron-rich microbial mats at an active hydrothermal vent system (Lō'ihi Seamount, Hawai'i). Appl Environ Microbiol 81:2976–2984. doi:<a href="http://dx.doi.org/10.1128/AEM.03608-14" target="_blank">10.1128/AEM.03608-14</a>. (<a href="http://dmoserv3.whoi.edu/data_docs/Ecology_of_Vent_Mats/Appl_Environ_Microbiol-2015-Jesser.pdf">PDF</a>)</p>
<p><strong>RR1413 (Mariana 2014)</strong><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Moyer/SRoF-Ironman-2014-CruiseReport-withdivelogs.pdf">RR1413 Cruise Report</a> (5.2 MB PDF)<br />
<a href="http://dmoserv3.whoi.edu/data_docs/Ecology_of_Vent_Mats/Urushima2Rota.pdf">Urushima to Rota Map (PDF)</a><br />
Jason Virtual Control Van website: <a href="http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-rr1413/index.html" target="_blank">http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-rr1413/index.html</a></p>
<p><em>Related Publications:</em><br />
<em><strong>Hager</strong></em>, K. W., H. Fullerton, D. A. Butterfield, and C. L. Moyer. 2017. Community structure of lithotrophically-driven hydrothermal microbial mats from the Mariana Arc and Back-Arc. Frontiers in Microbiology 8:1578. doi:<a href="http://dx.doi.org/10.3389/fmicb.2017.01578" target="_blank">10.3389/fmicb.2017.01578</a></p>
Ecology of Vent Mats
largerWorkCitation
project
eng; USA
oceans
Loihi Seamount, Hawaii
2016-09-26
Loihi Seamount, Hawaii; and Mariana Arc and Backarc Hydrothermal Systems
0
BCO-DMO catalogue of parameters from Log of Jason Dives from cruise TN293 at the Loihi Seamount in March 2013
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/659752.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>Date and time of collection, formatted to the ISO 8601 standard (YYYY-mm-ddTHH:MM:SS.xxZ where T indicates the start of the time string). BCO-DMO generated values in this columns using the date and time columns in the original data file.</p>
http://lod.bco-dmo.org/id/dataset-parameter/659753.rdf
Name: dive
Units: unitless
Description: <p>Dive identification number</p>
http://lod.bco-dmo.org/id/dataset-parameter/659754.rdf
Name: location
Units: unitless
Description: <p>Location of collection</p>
http://lod.bco-dmo.org/id/dataset-parameter/659755.rdf
Name: x
Units: unitless
Description: <p>x component of the location coordinates; location coordinates are based on the nav that the Jason team places before deployment. x, y, z, and heading are all based on the NAV net that Jason personnel deploy prior to the cruise. They convert these to GPS coordinates, but do a reanalysis of nav (re-nav) at the end of the dive. For GPS coordinates, see the virtual van website: <a href="http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html" target="_blank">http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html</a></p>
http://lod.bco-dmo.org/id/dataset-parameter/659756.rdf
Name: y
Units: unitless
Description: <p>y component of the location coordinates; location coordinates are based on the nav that the Jason team places before deployment. x, y, z, and heading are all based on the NAV net that Jason personnel deploy prior to the cruise. They convert these to GPS coordinates, but do a reanalysis of nav (re-nav) at the end of the dive. For GPS coordinates, see the virtual van website: <a href="http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html" target="_blank">http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html</a></p>
http://lod.bco-dmo.org/id/dataset-parameter/659757.rdf
Name: z
Units: unitless
Description: <p>z component of the location coordinates; location coordinates are based on the nav that the Jason team places before deployment. x, y, z, and heading are all based on the NAV net that Jason personnel deploy prior to the cruise. They convert these to GPS coordinates, but do a reanalysis of nav (re-nav) at the end of the dive. For GPS coordinates, see the virtual van website: <a href="http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html" target="_blank">http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html</a></p>
http://lod.bco-dmo.org/id/dataset-parameter/659758.rdf
Name: heading
Units: degrees
Description: <p>Heading. x, y, z, and heading are all based on the NAV net that Jason personnel deploy prior to the cruise. They convert these to GPS coordinates, but do a reanalysis of nav (re-nav) at the end of the dive. For GPS coordinates, see the virtual van website: <a href="http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html" target="_blank">http://4dgeo.whoi.edu/webdata/virtualvan/html/VV-tn293/index.html</a></p>
http://lod.bco-dmo.org/id/dataset-parameter/659759.rdf
Name: depth
Units: meters (m)
Description: <p>Depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/659760.rdf
Name: sample_name
Units: unitless
Description: <p>Sample name</p>
http://lod.bco-dmo.org/id/dataset-parameter/659761.rdf
Name: sample_type
Units: unitless
Description: <p>Sample type:<br />
Temp probe = Jason high temperature probe.<br />
Echem = Cyclic voltammetry electrochemistry wand for in situ chemistry measurements.<br />
BMS = BM = Biomat syringe sampler for fine scale microbial mat sampling.<br />
Major = Major Ti-samplers for collection of discrete high temperature venting fluids.<br />
Gas = Gas sampler for collecting gasses from venting fluids.<br />
MTR = Miniature temperature recorder, placed in vent fluids and collected at a later time to download long-term temperature data.<br />
Slide Trap = Sampler with glass slides installed to allow for colonization by microbes and immediate visualization onboard.<br />
SIO Charges = Colonization chambers.<br />
Scoop = Contained sampler with ball valve on end to prevent turbulent flow.<br />
Nanostick = Stick sampler for long term deployment and chemical analysis.<br />
PVC = Grid for deployment at mat removal site.<br />
Slurp = Suction Sample = Suction sample hose for collecting large microbial mat samples.<br />
Micromanipulator = Manipulate EChem probe on a micron scale to collect profiles through mats.<br />
Baby Suck = Single syringe BMS sampler for collection of biomat.<br />
Photo document = Imaging of mat sites.<br />
Photo Mosaic = Downward-looking photography for stitching for large scale vent mapping.<br />
Rock = Collection of rocks for examination of microbial colonizers</p>
http://lod.bco-dmo.org/id/dataset-parameter/659762.rdf
Name: sample_details
Units: unitless
Description: <p>Sample details/notes</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
50067
https://datadocs.bco-dmo.org/file/oAAmoRnh6vnj7k/TN293_Dive_Log.csv
TN293_Dive_Log.csv
Primary data file for dataset ID 659743
download
https://osprey.bco-dmo.org/dataset/659743/data/download
download
onLine
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: Instrument Name: ROV Jason Instrument Short Name:ROV Jason Instrument Description: The Remotely Operated Vehicle (ROV) Jason is operated by the Deep Submergence Laboratory (DSL) at Woods Hole Oceanographic Institution (WHOI). WHOI engineers and scientists designed and built the ROV Jason to give scientists access to the seafloor that didn't require them leaving the deck of the ship. Jason is a two-body ROV system. A 10-kilometer (6-mile) fiber-optic cable delivers electrical power and commands from the ship through Medea and down to Jason, which then returns data and live video imagery. Medea serves as a shock absorber, buffering Jason from the movements of the ship, while providing lighting and a bird’s eye view of the ROV during seafloor operations. During each dive (deployment of the ROV), Jason pilots and scientists work from a control room on the ship to monitor Jason’s instruments and video while maneuvering the vehicle and optionally performing a variety of sampling activities. Jason is equipped with sonar imagers, water samplers, video and still cameras, and lighting gear. Jason’s manipulator arms collect samples of rock, sediment, or marine life and place them in the vehicle’s basket or on "elevator" platforms that float heavier loads to the surface. More information is available from the operator site at URL. https://ndsf.whoi.edu/jason/
Cruise: TN293
TN293
R/V Thomas G. Thompson
Community Standard Description
International Council for the Exploration of the Sea
R/V Thomas G. Thompson
vessel
TN293
Craig L. Moyer
Western Washington University
R/V Thomas G. Thompson
Community Standard Description
International Council for the Exploration of the Sea
R/V Thomas G. Thompson
vessel