http://lod.bco-dmo.org/id/dataset/662096
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-10-20
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Coral species list and site descriptions for studies conducted on the partial SSU rRNA genes of bacteria and archaea in the Florida Keys, Australia, and Micronesia in 2013. (Coral Microbial Relationships project)
2016-10-20
publication
2016-10-20
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-04-22
publication
https://doi.org/10.1575/1912/bco-dmo.662096.1
Amy Apprill
Woods Hole Oceanographic Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Apprill, A. (2016) Coral species list and site descriptions for studies conducted on the partial SSU rRNA genes of bacteria and archaea in the Florida Keys, Australia, and Micronesia in 2013. (Coral Microbial Relationships project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2016-10-20 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.662096.1 [access date]
List of species that were sampled and locations of sampling sites. Dataset Description: <p>&nbsp;</p>
<p>A list of the coral species sampled and the site locations for studies conducted on the partial SSU rRNA genes of bacteria and archaea from tissue samples produced using 515F/806RB primers. Samples were collected in the Federated States of Micronesia, Austrailia, and the Florida&nbsp;Keys.</p> Methods and Sampling: <p><strong>Coral collection and processing</strong></p>
<p>Coral fragments were collected by a scuba diver using a hammer and chisel during field sampling trips to Kapangamarangi Atoll, Micronesia (November 2012), Florida Keys, U.S.A. (May 2013) and Magnetic Bay, Australia (November 2013). Fragments were stored in a cooler containing ice until they were flash frozen in liquid nitrogen. Fragments were obtained from 3 representative colonies of the following species: <em>Porites&nbsp;</em><em>lobata</em><em>,&nbsp;Pocillopora&nbsp;</em><em>verrucosa</em><em>,&nbsp;Acropora&nbsp;</em><em>humilis</em><em>, Orbicella&nbsp;</em><em>faveolata</em><em>, Montastraea&nbsp;</em><em>cavernosa</em><em>, O.&nbsp;</em><em>annularis</em><em>,&nbsp;and&nbsp;Diploria&nbsp;</em><em>strigosa</em>.&nbsp;Fragments were shipped back to Woods Hole Oceanographic Institution and stored at -80 C until they were processed.&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1233612 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1233612
completed
Amy Apprill
Woods Hole Oceanographic Institution
508-289-2649
Marine Chemistry and Geochemistry Department 266 Woods Hole Road, MS# 4
Woods Hole
MA
02543
USA
aapprill@whoi.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
species
collection_site
lat
lon
depth
colony_name
theme
None, User defined
species scientific name (binomial)
site
latitude
longitude
depth
sample identification
featureType
BCO-DMO Standard Parameters
Apprill_2013
service
Deployment Activity
Bermuda, Red Sea, Federated States of Micronesia, Florida Keys, and Australia
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Fundamental Coral-Microbial Associations
https://osprey.bco-dmo.org/project/564442
Fundamental Coral-Microbial Associations
<p><em>Description from NSF award abstract:</em><br />
Reef-building corals are in decline worldwide due in part to climate change and other human activities, and it is becoming increasingly important to understand what aspects of coral biology are degraded by environmental stress which then leads to coral mortality. It is now widely known that corals harbor communities of bacteria and archaea that are believed to play important roles in maintaining the health of their hosts, but we lack any appreciable understanding about the identity of the microbial associates regularly residing within healthy, reef-building corals. This project asks the central question: do reef-building corals harbor fundamental or persistent microbial associates that are symbiotic within their tissues? In order to address this hypothesis, the investigator will assess the identity of the bacterial and archaeal microbes using a variety of molecular and microscopy approaches that includes the identification and localization of a widespread group of coral bacterial associates belonging to the genus Endozoicomonas. The results of this study will then be used to develop additional questions about the role of these microbial associates in nutrient cycling and how they contribute to the health and survival of corals.</p>
Coral Microbial Relationships
largerWorkCitation
project
eng; USA
oceans
Bermuda, Red Sea, Federated States of Micronesia, Florida Keys, and Australia
-81.39111
146.852
-15.0883
24.606054
2013-01-01
2013-12-31
Florida Keys, Federated States of Micronesia, Red Sea, & Bermuda
0
BCO-DMO catalogue of parameters from Coral species list and site descriptions for studies conducted on the partial SSU rRNA genes of bacteria and archaea in the Florida Keys, Australia, and Micronesia in 2013. (Coral Microbial Relationships project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/662148.rdf
Name: species
Units: unitless
Description: <p>Species of coral sampled</p>
http://lod.bco-dmo.org/id/dataset-parameter/662149.rdf
Name: collection_site
Units: unitless
Description: <p>Geographic location where sampling occurred</p>
http://lod.bco-dmo.org/id/dataset-parameter/662150.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude; N is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/662151.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude; W is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/662152.rdf
Name: depth
Units: meters
Description: <p>Depth where sampling occurred</p>
http://lod.bco-dmo.org/id/dataset-parameter/662153.rdf
Name: colony_name
Units: unitless
Description: <p>PI issued ID for the coral colony sampled</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
1638
https://darchive.mblwhoilibrary.org/bitstream/1912/24056/1/dataset-662096_site-locations-and-species-sampled__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.662096.1
download
onLine
dataset
<p><strong>Coral collection and processing</strong></p>
<p>Coral fragments were collected by a scuba diver using a hammer and chisel during field sampling trips to Kapangamarangi Atoll, Micronesia (November 2012), Florida Keys, U.S.A. (May 2013) and Magnetic Bay, Australia (November 2013). Fragments were stored in a cooler containing ice until they were flash frozen in liquid nitrogen. Fragments were obtained from 3 representative colonies of the following species: <em>Porites&nbsp;</em><em>lobata</em><em>,&nbsp;Pocillopora&nbsp;</em><em>verrucosa</em><em>,&nbsp;Acropora&nbsp;</em><em>humilis</em><em>, Orbicella&nbsp;</em><em>faveolata</em><em>, Montastraea&nbsp;</em><em>cavernosa</em><em>, O.&nbsp;</em><em>annularis</em><em>,&nbsp;and&nbsp;Diploria&nbsp;</em><em>strigosa</em>.&nbsp;Fragments were shipped back to Woods Hole Oceanographic Institution and stored at -80 C until they were processed.&nbsp;</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Data Processing Notes:</strong><br />
-removed spaces and replaced with underscores<br />
-reformatted column names to comply with BCO-DMO standards<br />
-converted all lat/lons to decimal degrees</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: Apprill_2013
Apprill_2013
BIOS
BIOS
laboratory
Apprill_2013
Amy Apprill
Woods Hole Oceanographic Institution
BIOS
BIOS
laboratory