http://lod.bco-dmo.org/id/dataset/662421
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-10-25
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Dimethylsulfoniopropionate (DMSP) concentrations and turnover during a deployment of the Environmental Sample Processor in Fall, 2014 in Monterey Bay, CA
2016-10-25
publication
2016-10-25
revision
BCO-DMO Linked Data URI
2016-10-25
creation
http://lod.bco-dmo.org/id/dataset/662421
Mary Ann Moran
University of Georgia
principalInvestigator
James M. Birch
Monterey Bay Aquarium Research Institute
principalInvestigator
Ronald P. Kiene
University of South Alabama
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Moran, M., Birch, J. M., Kiene, R. P. (2016) Dimethylsulfoniopropionate (DMSP) concentrations and turnover during a deployment of the Environmental Sample Processor in Fall, 2014 in Monterey Bay, CA. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2016-10-25 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/662421 [access date]
DMSP concentrations from ESP, fall 2014 Dataset Description: Methods and Sampling: <p>Glycine betaine, an inhibitor of bacterial DMSP uptake, was added at 5 micromolar concentrations to&nbsp;triplicate samples; triplicate controls had no addition. Subsamples were removed at the initial time point and at 2 hr intervals up to 6 hrs. Samples were analyzed for remaining DMSPd and the difference between glycine betaine and control incubations was calculated to estimate DMSP consumption rate.</p>
<p>For methodology&nbsp;details, see:<br />
<br />
Varaljay, V., et al. Single-taxon field measurements of bacterial gene regulation controlling DMSP fate. The ISME Journal (2015), 1-10.&nbsp;doi:10.1038/ismej.2015.23</p>
<p>Rellinger, A., et al. Occurrence and turnover of DMSP and DMS in deep waters of the Ross Sea, Antarctica.&nbsp;Deep-Sea Research I 56 (2009) 686–702.&nbsp;doi:10.1016/j.dsr.2008.12.010</p>
<p>Li, C., et al,&nbsp;Assessment of DMSP turnover reveals a non-bioavailable&nbsp;pool of dissolved DMSP in coastal waters of the Gulf of&nbsp;Mexico.&nbsp;Environ. Chem. (2015) http://dx.doi.org/10.1071/EN15052</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1342694 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1342694
completed
Mary Ann Moran
University of Georgia
706-542-6481
Department of Marine Sciences
Athens
GA
30602
USA
mmoran@uga.edu
pointOfContact
James M. Birch
Monterey Bay Aquarium Research Institute
7700 Sandholdt Rd.
Moss Landing
CA
95039
USA
jbirch@mbari.org
pointOfContact
Ronald P. Kiene
University of South Alabama
pointOfContact
asNeeded
Unknown
date
lat
lon
DMSPt_nM
DMSPt_stdev
DMSPd_consumption
comments
Shimadzu GC-2014 gas chromatograph equipped with a Chromosil 330 column and a flame photometric detector for quantification
theme
None, User defined
date
latitude
longitude
dimethylsulphoniopropionate concentration
standard deviation
comments
featureType
BCO-DMO Standard Parameters
Gas Chromatograph
instrument
BCO-DMO Standard Instruments
Moran_Monterey_2014
service
Deployment Activity
Monterey Bay, CA
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Dimensions of Biodiversity
http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503446
Dimensions of Biodiversity
(adapted from the NSF Synopsis of Program)
Dimensions of Biodiversity is a program solicitation from the NSF Directorate for Biological Sciences. FY 2010 was year one of the program. [MORE from NSF]
The NSF Dimensions of Biodiversity program seeks to characterize biodiversity on Earth by using integrative, innovative approaches to fill rapidly the most substantial gaps in our understanding. The program will take a broad view of biodiversity, and in its initial phase will focus on the integration of genetic, taxonomic, and functional dimensions of biodiversity. Project investigators are encouraged to integrate these three dimensions to understand the interactions and feedbacks among them. While this focus complements several core NSF programs, it differs by requiring that multiple dimensions of biodiversity be addressed simultaneously, to understand the roles of biodiversity in critical ecological and evolutionary processes.
Dimensions of Biodiversity
largerWorkCitation
program
Bacterial Taxa that Control Sulfur Flux from the Ocean to the Atmosphere
https://osprey.bco-dmo.org/project/541255
Bacterial Taxa that Control Sulfur Flux from the Ocean to the Atmosphere
<p>Surface ocean bacterioplankton preside over a divergence point in the marine sulfur cycle where the fate of dimethylsulfoniopropionate (DMSP) is determined. While it is well recognized that this juncture influences the fate of sulfur in the ocean and atmosphere, its regulation by bacterioplankton is not yet understood. Based on recent findings in biogeochemistry, bacterial physiology, bacterial genetics, and ocean instrumentation, the microbial oceanography community is poised to make major advances in knowledge of this control point. This research project is ascertaining how the major taxa of bacterial DMSP degraders in seawater regulate DMSP transformations, and addresses the implications of bacterial functional, genetic, and taxonomic diversity for global sulfur cycling.</p>
<p>The project is founded on the globally important function of bacterial transformation of the ubiquitous organic sulfur compound DMSP in ocean surface waters. Recent genetic discoveries have identified key genes in the two major DMSP degradation pathways, and the stage is now set to identify the factors that regulate gene expression to favor one or the other pathway during DMSP processing. The taxonomy of the bacteria mediating DMSP cycling has been deduced from genomic and metagenomic sequencing surveys to include four major groups of surface ocean bacterioplankton. How regulation of DMSP degradation differs among these groups and maps to phylogeny in co-occurring members is key information for understanding the marine sulfur cycle and predicting its function in a changing ocean. Using model organism studies, microcosm experiments (at Dauphin Island Sea Lab, AL), and time-series field studies with an autonomous sample collection instrument (at Monterey Bay, CA), this project is taking a taxon-specific approach to decipher the regulation of bacterial DMSP degradation.</p>
<p>This research addresses fundamental questions of how the diversity of microbial life influences the geochemical environment of the oceans and atmosphere, linking the genetic basis of metabolic potential to taxonomic diversity. The project is training graduate students and post-doctoral scholars in microbial biodiversity and providing research opportunities and mentoring for undergraduate students. An outreach program is enhance understanding of the role and diversity of marine microorganisms in global elemental cycles among high school students. Advanced Placement Biology students are participating in marine microbial research that covers key learning goals in the AP Biology curriculum. Two high school students are selected each year for summer research internships in PI laboratories.</p>
OceanSulfurFluxBact
largerWorkCitation
project
eng; USA
oceans
Monterey Bay, CA
2016-10-25
0
BCO-DMO catalogue of parameters from Dimethylsulfoniopropionate (DMSP) concentrations and turnover during a deployment of the Environmental Sample Processor in Fall, 2014 in Monterey Bay, CA
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/662433.rdf
Name: date
Units: year-month-day
Description: <p>date; Pacific time zone</p>
http://lod.bco-dmo.org/id/dataset-parameter/662434.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/662435.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/662436.rdf
Name: DMSPt_nM
Units: nanoMoles
Description: <p>dimethylsulfoniopropionate (DMSP) concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/662437.rdf
Name: DMSPt_stdev
Units: nanoMoles
Description: <p>DMSP concentration standard deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/662438.rdf
Name: DMSPd_consumption
Units: nanoMoles/day (nM/day)
Description: <p>DMSPd consumption rate based on glycine betaine inhibition: the difference between glycine betaine and control incubations</p>
http://lod.bco-dmo.org/id/dataset-parameter/662439.rdf
Name: comments
Units: unitless
Description: <p>comments</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
906
https://datadocs.bco-dmo.org/file/jAABjQDuG1MKYp/dmsp.csv
dmsp.csv
Primary data file for dataset ID 662421
download
https://osprey.bco-dmo.org/dataset/662421/data/download
download
onLine
dataset
<p>Glycine betaine, an inhibitor of bacterial DMSP uptake, was added at 5 micromolar concentrations to&nbsp;triplicate samples; triplicate controls had no addition. Subsamples were removed at the initial time point and at 2 hr intervals up to 6 hrs. Samples were analyzed for remaining DMSPd and the difference between glycine betaine and control incubations was calculated to estimate DMSP consumption rate.</p>
<p>For methodology&nbsp;details, see:<br />
<br />
Varaljay, V., et al. Single-taxon field measurements of bacterial gene regulation controlling DMSP fate. The ISME Journal (2015), 1-10.&nbsp;doi:10.1038/ismej.2015.23</p>
<p>Rellinger, A., et al. Occurrence and turnover of DMSP and DMS in deep waters of the Ross Sea, Antarctica.&nbsp;Deep-Sea Research I 56 (2009) 686–702.&nbsp;doi:10.1016/j.dsr.2008.12.010</p>
<p>Li, C., et al,&nbsp;Assessment of DMSP turnover reveals a non-bioavailable&nbsp;pool of dissolved DMSP in coastal waters of the Gulf of&nbsp;Mexico.&nbsp;Environ. Chem. (2015) http://dx.doi.org/10.1071/EN15052</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing notes:</strong><br />
- added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions<br />
- re-formatted date from m/d/yyyy to yyyy-mm-dd<br />
- added lat and lon of ESP mooring for mapping purposes</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Shimadzu GC-2014 gas chromatograph equipped with a Chromosil 330 column and a flame photometric detector for quantification
Shimadzu GC-2014 gas chromatograph equipped with a Chromosil 330 column and a flame photometric detector for quantification
PI Supplied Instrument Name: Shimadzu GC-2014 gas chromatograph equipped with a Chromosil 330 column and a flame photometric detector for quantification PI Supplied Instrument Description:To measure DMSP concentrations Instrument Name: Gas Chromatograph Instrument Short Name:Gas Chromatograph Instrument Description: Instrument separating gases, volatile substances, or substances dissolved in a volatile solvent by transporting an inert gas through a column packed with a sorbent to a detector for assay. (from SeaDataNet, BODC) Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB02/
Deployment: Moran_Monterey_2014
Moran_Monterey_2014
Univ_Georgia
laboratory
Moran_Monterey_2014
Mary Ann Moran
University of Georgia
Univ_Georgia
laboratory