http://lod.bco-dmo.org/id/dataset/664422
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-11-10
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Dissolved oxygen of pore water from sediment gravity cores, and push cores taken during R/V Atlantis cruise AT26-24 at the Dorado Outcrop near Cocos Ridge in December of 2014 (Dorado Outcrop project)
2016-11-10
publication
2016-11-10
revision
BCO-DMO Linked Data URI
2016-11-10
creation
http://lod.bco-dmo.org/id/dataset/664422
C. Geoffrey Wheat
University of Alaska Fairbanks
principalInvestigator
Andrew Fisher
University of California-Santa Cruz
principalInvestigator
Samuel Hulme
Moss Landing Marine Laboratories
principalInvestigator
James McManus
University of Akron
principalInvestigator
Beth N. Orcutt
Bigelow Laboratory for Ocean Sciences
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Wheat, C., Fisher, A., Hulme, S., McManus, J., Orcutt, B. N. (2016) Dissolved oxygen of pore water from sediment gravity cores, and push cores taken during R/V Atlantis cruise AT26-24 at the Dorado Outcrop near Cocos Ridge in December of 2014 (Dorado Outcrop project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2016-11-10 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/664422 [access date]
DO of pore water from sediment gravity and push cores Dataset Description: <p>This dataset contains dissolved oxygen data of pore waters from sediment gravity cores (2014) and push cores collected by Jason (2013) and Alvin (2014). &nbsp;Cores were collected during the&nbsp;R/V Atlantis cruises AT26-09 and AT26-24.</p> Methods and Sampling: <p>Sampling took place at Dorado Outcrop off the west coast of Costa Rica in the Pacific Ocean&nbsp;during the R/V&nbsp;Atlantis&nbsp;cruises AT26-09 and&nbsp;AT26-24. &nbsp;For more information about operations of this cruise see the cruise pages which contain links to cruise reports ( <a href="http://www.bco-dmo.org/deployment/627919" target="_blank">AT26-09</a>,&nbsp;<a href="http://www.bco-dmo.org/deployment/627856" target="_blank">AT26-24</a>).</p>
<p>Dissolved oxygen (DO) was measured&nbsp;at-sea&nbsp;in pore waters from sediment gravity cores and cores collected by the submersible&nbsp;ALVIN&nbsp;with a needle-type oxygen optode inserted radially into sediment cores, following published protocols (e.g., Orcutt&nbsp;et al., 2013).&nbsp;</p>
<p>Reference:</p>
<p>Orcutt, B. N., Wheat, C. G., Rouxel, O., Hulme, S., Edwards, K. J., Bach, W., 2013. Oxygen Consumption rates in subseafloor basaltic crust derived from a&nbsp;reaction transport&nbsp;model, Nature Comm., published 27 Sep 2013, pg. 1-8, doi:10.1038/ncomms3539.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1130146 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1130146
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1131210 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1131210
completed
C. Geoffrey Wheat
University of Alaska Fairbanks
831-633-7033
Institute of Marine Science P. O. Box 475
Moss Landing
CA
95039
USA
wheat@mbari.org
pointOfContact
Andrew Fisher
University of California-Santa Cruz
831-459-5598
E&MS Building, Room A232 1156 High Street
Santa Cruz
CA
95064
USA
afisher@ucsc.edu
pointOfContact
Samuel Hulme
Moss Landing Marine Laboratories
831-771-4454
8272 Moss Landing Rd.
Moss Landing
CA
95039
USA
shulme@mlml.calstate.edu
pointOfContact
James McManus
University of Akron
207-315-2567, ext. 307
60 Bigelow Drive
East Boothbay
ME
04544
USA
mcmanusjim@icloud.com
pointOfContact
Beth N. Orcutt
Bigelow Laboratory for Ocean Sciences
207-315-2567 ext 312
60 Bigelow Drive PO Box 380
East Boothbay
Maine
04544
USA
borcutt@bigelow.org
pointOfContact
asNeeded
Unknown
cruise_id
lat_approx
lon_approx
core_id
sediment_depth
oxygen
comment
ALVIN needle-type oxygen optode
Alvin push cores
theme
None, User defined
Cruise identfier
latitude
longitude
core id
depth core
dissolved Oxygen
comments
featureType
BCO-DMO Standard Parameters
Gravity Corer
Oxygen Sensor
Push Corer
ROV Jason
instrument
BCO-DMO Standard Instruments
AT26-24
AT26-09
service
Deployment Activity
Dorado Outcrop near Cocos Ridge; (87 06'W, 9 50'N)
Dorado Outcrop near Cocos Ridge (87 06'W, 9 50'N)
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Center for Dark Energy Biosphere Investigations
http://www.darkenergybiosphere.org
Center for Dark Energy Biosphere Investigations
The mission of the Center for Dark Energy Biosphere Investigations (C-DEBI) is to explore life beneath the seafloor and make transformative discoveries that advance science, benefit society, and inspire people of all ages and origins.
C-DEBI provides a framework for a large, multi-disciplinary group of scientists to pursue fundamental questions about life deep in the sub-surface environment of Earth. The fundamental science questions of C-DEBI involve exploration and discovery, uncovering the processes that constrain the sub-surface biosphere below the oceans, and implications to the Earth system. What type of life exists in this deep biosphere, how much, and how is it distributed and dispersed? What are the physical-chemical conditions that promote or limit life? What are the important oxidation-reduction processes and are they unique or important to humankind? How does this biosphere influence global energy and material cycles, particularly the carbon cycle? Finally, can we discern how such life evolved in geological settings beneath the ocean floor, and how this might relate to ideas about the origin of life on our planet?
C-DEBI's scientific goals are pursued with a combination of approaches:
(1) coordinate, integrate, support, and extend the research associated with four major programs—Juan de Fuca Ridge flank (JdF), South Pacific Gyre (SPG), North Pond (NP), and Dorado Outcrop (DO)—and other field sites;
(2) make substantial investments of resources to support field, laboratory, analytical, and modeling studies of the deep subseafloor ecosystems;
(3) facilitate and encourage synthesis and thematic understanding of submarine microbiological processes, through funding of scientific and technical activities, coordination and hosting of meetings and workshops, and support of (mostly junior) researchers and graduate students; and
(4) entrain, educate, inspire, and mentor an interdisciplinary community of researchers and educators, with an emphasis on undergraduate and graduate students and early-career scientists.
Note: Katrina Edwards was a former PI of C-DEBI; James Cowen is a former co-PI.
Data Management:
C-DEBI is committed to ensuring all the data generated are publically available and deposited in a data repository for long-term storage as stated in their Data Management Plan (PDF) and in compliance with the NSF Ocean Sciences Sample and Data Policy. The data types and products resulting from C-DEBI-supported research include a wide variety of geophysical, geological, geochemical, and biological information, in addition to education and outreach materials, technical documents, and samples. All data and information generated by C-DEBI-supported research projects are required to be made publically available either following publication of research results or within two (2) years of data generation.
To ensure preservation and dissemination of the diverse data-types generated, C-DEBI researchers are working with BCO-DMO Data Managers make data publicly available online. The partnership with BCO-DMO helps ensure that the C-DEBI data are discoverable and available for reuse. Some C-DEBI data is better served by specialized repositories (NCBI's GenBank for sequence data, for example) and, in those cases, BCO-DMO provides dataset documentation (metadata) that includes links to those external repositories.
C-DEBI
largerWorkCitation
program
Discovery, sampling, and quantification of flows from cool yet massive ridge-flank hydrothermal springs on Dorado Outcrop, eastern Pacific Ocean
http://www.darkenergybiosphere.org/research/dorado.html
Discovery, sampling, and quantification of flows from cool yet massive ridge-flank hydrothermal springs on Dorado Outcrop, eastern Pacific Ocean
<p><em>Description from NSF award abstract:</em><br />
Pristine fluids from a typical ridge-flank hydrothermal system have never been sampled, mainly because it has not been possible to locate a site of focused discharge where representative samples could be collected. The PIs have located a small basement feature, Dorado outcrop, on 23 m.y.-old seafloor on the eastern flank of the East Pacific Rise that they plan to sample to determine the fluid composition, and to assess the rate of discharge from the outcrop, so that they can quantify the chemical impact of this hydrothermal system. They plan an 18-day expedition that combines the surveying capabilities of the AUV Sentry (bathymetric, sub-bottom sonar, photo mosaics, water column anomalies) and an ocean-class vessel capable of collecting high-quality multi-beam data and CTD samples, and supporting the survey and sampling capabilities of the ROV Jason II for collection of spring and plume fluids, heat flow data, sediment push cores, and still and video photography. These data and samples will be combined hopefully to generate the first well-constrained estimates of hydrothermal flows from Dorado outcrop. This expedition will result in the collection of samples and data from a "fire hose" of ridge-flank, hydrothermal system, challenging the commonly held view that discharge from ridge flank hydrothermal systems occurs primarily from diffuse seeps.</p>
Dorado Outcrop
largerWorkCitation
project
eng; USA
oceans
Dorado Outcrop near Cocos Ridge; (87 06'W, 9 50'N); Dorado Outcrop near Cocos Ridge (87 06'W, 9 50'N)
2016-11-10
Dorado Outcrop near Cocos Ridge (9N, 87W)
0
BCO-DMO catalogue of parameters from Dissolved oxygen of pore water from sediment gravity cores, and push cores taken during R/V Atlantis cruise AT26-24 at the Dorado Outcrop near Cocos Ridge in December of 2014 (Dorado Outcrop project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/664439.rdf
Name: cruise_id
Units: unitless
Description: <p>Cruise identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/664441.rdf
Name: lat_approx
Units: decimal degrees
Description: <p>Approximate latitude of Dorado Outcrop</p>
http://lod.bco-dmo.org/id/dataset-parameter/664443.rdf
Name: lon_approx
Units: decimal degrees
Description: <p>Approximate longitude of Dorado Outcrop</p>
http://lod.bco-dmo.org/id/dataset-parameter/664447.rdf
Name: core_id
Units: unitless
Description: <p>Core identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/664449.rdf
Name: sediment_depth
Units: centimeters
Description: <p>Depth in core sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/664450.rdf
Name: oxygen
Units: micromoles per liter (uM)
Description: <p>Dissolved oxygen</p>
http://lod.bco-dmo.org/id/dataset-parameter/664451.rdf
Name: comment
Units: unitless
Description: <p>Comment for core and sample depth</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
6160
https://datadocs.bco-dmo.org/file/rggprkkUr8762q/Core_O2.csv
Core_O2.csv
Primary data file for dataset ID 664422
download
https://osprey.bco-dmo.org/dataset/664422/data/download
download
onLine
dataset
<p>Sampling took place at Dorado Outcrop off the west coast of Costa Rica in the Pacific Ocean&nbsp;during the R/V&nbsp;Atlantis&nbsp;cruises AT26-09 and&nbsp;AT26-24. &nbsp;For more information about operations of this cruise see the cruise pages which contain links to cruise reports ( <a href="http://www.bco-dmo.org/deployment/627919" target="_blank">AT26-09</a>,&nbsp;<a href="http://www.bco-dmo.org/deployment/627856" target="_blank">AT26-24</a>).</p>
<p>Dissolved oxygen (DO) was measured&nbsp;at-sea&nbsp;in pore waters from sediment gravity cores and cores collected by the submersible&nbsp;ALVIN&nbsp;with a needle-type oxygen optode inserted radially into sediment cores, following published protocols (e.g., Orcutt&nbsp;et al., 2013).&nbsp;</p>
<p>Reference:</p>
<p>Orcutt, B. N., Wheat, C. G., Rouxel, O., Hulme, S., Edwards, K. J., Bach, W., 2013. Oxygen Consumption rates in subseafloor basaltic crust derived from a&nbsp;reaction transport&nbsp;model, Nature Comm., published 27 Sep 2013, pg. 1-8, doi:10.1038/ncomms3539.</p>
from Cruise: AT26-09 <p>HOBO logger deployed during AT26-09</p>
Specified by the Principal Investigator(s)
<p>The data have not been processed further.</p>
<p><strong>BCO-DMO Processing Notes:</strong></p>
<p>* added a conventional header with dataset name, PI name, version date<br />
*&nbsp;modified parameter names to conform with BCO-DMO naming conventions<br />
*&nbsp;blank values replaced with no data value 'nd'<br />
*&nbsp;added approximate lat/lon values for Dorado Outcrop sample site</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: Instrument Name: Gravity Corer Instrument Short Name:Gravity Corer Instrument Description: The gravity corer allows researchers to sample sediment layers at the bottom of lakes or oceans. The coring device is deployed from the ship and gravity carries it to the seafloor. (http://www.whoi.edu/instruments/viewInstrument.do?id=1079). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/51/
ALVIN needle-type oxygen optode
ALVIN needle-type oxygen optode
PI Supplied Instrument Name: ALVIN needle-type oxygen optode Instrument Name: Oxygen Sensor Instrument Short Name:Dissolved Oxygen Sensor Instrument Description: An electronic device that measures the proportion of oxygen (O2) in the gas or liquid being analyzed
Alvin push cores
Alvin push cores
PI Supplied Instrument Name: Alvin push cores Instrument Name: Push Corer Instrument Short Name: Instrument Description: Capable of being performed in numerous environments, push coring is just as it sounds. Push coring is simply pushing the core barrel (often an aluminum or polycarbonate tube) into the sediment by hand. A push core is useful in that it causes very little disturbance to the more delicate upper layers of a sub-aqueous sediment.
Description obtained from: http://web.whoi.edu/coastal-group/about/how-we-work/field-methods/coring/
PI Supplied Instrument Name: Instrument Name: ROV Jason Instrument Short Name:ROV Jason Instrument Description: The Remotely Operated Vehicle (ROV) Jason is operated by the Deep Submergence Laboratory (DSL) at Woods Hole Oceanographic Institution (WHOI). WHOI engineers and scientists designed and built the ROV Jason to give scientists access to the seafloor that didn't require them leaving the deck of the ship. Jason is a two-body ROV system. A 10-kilometer (6-mile) fiber-optic cable delivers electrical power and commands from the ship through Medea and down to Jason, which then returns data and live video imagery. Medea serves as a shock absorber, buffering Jason from the movements of the ship, while providing lighting and a bird’s eye view of the ROV during seafloor operations. During each dive (deployment of the ROV), Jason pilots and scientists work from a control room on the ship to monitor Jason’s instruments and video while maneuvering the vehicle and optionally performing a variety of sampling activities. Jason is equipped with sonar imagers, water samplers, video and still cameras, and lighting gear. Jason’s manipulator arms collect samples of rock, sediment, or marine life and place them in the vehicle’s basket or on "elevator" platforms that float heavier loads to the surface. More information is available from the operator site at URL. https://ndsf.whoi.edu/jason/
Cruise: AT26-24
AT26-24
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT26-24
C. Geoffrey Wheat
University of Alaska Fairbanks
http://dmoserv3.whoi.edu/data_docs/C-DEBI/cruise_reports/AT26-24_Dorado_Outcrop_2014_Cruise_Report_reduced.pdf
Report describing AT26-24
Cruise: AT26-09
AT26-09
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT26-09
C. Geoffrey Wheat
University of Alaska Fairbanks
http://dmoserv3.whoi.edu/data_docs/C-DEBI/cruise_reports/AT26-09_DoradoCruiseReport2013.pdf
Report describing AT26-09
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel