http://lod.bco-dmo.org/id/dataset/666280
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-11-29
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Benthic Ecosystem and Acidification Measuring System (BEAMS) data from two sites on the western terrace of the Palmyra Atoll collected during 2014 (BEAMS project)
2016-11-29
publication
2016-11-29
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-04-17
publication
https://doi.org/10.1575/1912/bco-dmo.666280.1
Yuichiro Takeshita
Carnegie Institution for Science
principalInvestigator
Todd R. Martz
University of California-San Diego Scripps
principalInvestigator
Wade McGillis
Columbia University
principalInvestigator
Nichole N. Price
Bigelow Laboratory for Ocean Sciences
principalInvestigator
Jennifer Smith
University of California-San Diego Scripps
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Takeshita, Y., Martz, T., McGillis, W., Price, N., Smith, J. (2016) Benthic Ecosystem and Acidification Measuring System (BEAMS) data from two sites on the western terrace of the Palmyra Atoll collected during 2014 (BEAMS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2016-11-29 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.666280.1 [access date]
BEAMS data from two sites on the western terrace on Palmyra Atoll during 2014. Dataset Description: <p>Benthic Ecosystem and Acidification Measuring System (BEAMS) data from two sites (LL and RT4) on the western terrace of the Palmyra Atoll. The data was collected in 2014.</p> Methods and Sampling: <p>This dataset was collected using the Benthic Ecosystem and Acidification Measuring System (BEAMS). The details of this technique and dataset can be in the reference provided below. BEAMS uses autonomous sensors to quantify mean gradients of pH and O2&nbsp;and the current velocity profile in the BBL to calculate benthic fluxes of O2&nbsp;(NCP) and TA (NCC). The NCP and NCC provided here represent metabolic rates under completely natural (e.g. flow and light) conditions.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1316006 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1316006
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1316047 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1316047
completed
Yuichiro Takeshita
Carnegie Institution for Science
7700 Sandholdt Road
Moss Landing
CA
95039
USA
yui@mbari.org
pointOfContact
Todd R. Martz
University of California-San Diego Scripps
858-534-7466
9500 Gilman Drive Mail Stop 0244
La Jolla
CA
92093
USA
trmartz@ucsd.edu
pointOfContact
Wade McGillis
Columbia University
845-365-8562
Lamont-Doherty Earth Observatory Columbia University
Palisades
NY
10964-8000
USA
wrm2102@columbia.edu
pointOfContact
Nichole N. Price
Bigelow Laboratory for Ocean Sciences
60 Bigelow Dr,
East Boothbay
ME
04544
USA
nprice@bigelow.org
pointOfContact
Jennifer Smith
University of California-San Diego Scripps
858-246-0803
Scripps Institution of Oceanography, UCSD 9500 Gilman Drive
La Jolla
CA
92093-0202
USA
smithj@ucsd.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
site
date
time
pH_1_1m
pH_0_5m
pH_0_3m
temp_1_1m
temp_0_5m
temp_0_3m
DO_1_1m
DO_0_5m
DO_0_3m
OMEGA_1_1m
OMEGA_0_5m
OMEGA_0_3m
PAR
pressure
current_speed
salinity
NCP
NCC_Q_0_8
NCC_Q_0_9
NCC_Q_1_0
NCC_Q_1_1
NCC_Q_1_2
ISO_DateTime_UTC
lat
lon
Flow meter
Light Meter
autonomous oxygen sensor
autonomous pH sensor
theme
None, User defined
site
date
time of day
pH
temperature of sample or a generic measurement (not in-situ water temp)
dissolved Oxygen
Aragonite Saturation State
PAR
water pressure
curr_speed_rel
salinity
production
calcification
ISO_DateTime_UTC
latitude
longitude
featureType
BCO-DMO Standard Parameters
Flow Meter
Light Meter
Oxygen Sensor
pH Sensor
instrument
BCO-DMO Standard Instruments
BEAMS_Palmyra
service
Deployment Activity
Palmyra Atoll, Western Terrace
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Quantifying the potential for biogeochemical feedbacks to create 'refugia' from ocean acidification on tropical coral reefs
https://osprey.bco-dmo.org/project/651861
Quantifying the potential for biogeochemical feedbacks to create 'refugia' from ocean acidification on tropical coral reefs
<p><em>Description from NSF award abstract:</em><br />
Rising sea surface temperatures and ocean acidification (OA) may threaten the ability of calcified organisms to build carbonate reefs, but it is unclear if particular reefs have the capacity to tolerate global change. Current understanding of the effects of OA on coral reefs originates from single-species laboratory studies largely focused on scleractinian corals. Traditionally, these experiments attempt to mimic static future conditions under the assumption that coastal regimes are as constant as -- and will acidify at the same rate as -- open ocean surface waters. Predictions based on these oversimplified scenarios are unrealistic because numerous benthic organisms, including calcifiers and primary producers, significantly alter the bulk seawater carbonate chemistry over a diurnal cycle. Further, the prevalence of recently appreciated extreme diel fluctuations in pH across some reefs suggests that benthic species may be acclimated to future carbonate conditions.</p>
<p>To look for potential OA refugia on reefs, a research team from the Scripps Institute of Oceanography (University of California at San Diego) and the Lamont Dougherty Earth Observatory (Columbia University) will undertake a unique mechanistic study on Palmyra Atoll, a remote uninhabited island in the central Pacific that lacks degradation from local human influence. They will explore the strengths and controls of biogeochemical feedbacks from coral reef benthic community assemblages to the seawater chemistry above and experimentally determine how this natural fluctuation affects physiological responses of key taxa to OA. Specifically they will: (1) tightly integrate a novel benthic flux technique in situ that allows continuous, high-temporal resolution measurements of net ecosystem metabolic rates (production and calcification) with an ongoing high spatial resolution benthic community dynamics study to quantify feedbacks of known species assemblages to observed natural spatiotemporal variability in seawater carbonate chemistry; and (2) use small scale common garden CO2 enrichment experiments and productivity/respiration assays in the lab paired with reciprocal transplant experiments in situ to empirically quantify the effects of elevated and/or fluctuating pCO2 on growth, calcification and photophysiology of common framework building organisms and their benthic competitors. This should allow them to examine the coupled interactions between OA and diverse benthic coral reef organisms in their natural environment in the absence of other confounding human impacts.</p>
BEAMS
largerWorkCitation
project
eng; USA
oceans
Palmyra Atoll, Western Terrace
-162.122
-162.119
5.877
5.883
2014-09-07
2014-09-23
0
BCO-DMO catalogue of parameters from Benthic Ecosystem and Acidification Measuring System (BEAMS) data from two sites on the western terrace of the Palmyra Atoll collected during 2014 (BEAMS project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/666469.rdf
Name: site
Units: unitless
Description: <p>Site in Palmyra where data were collected.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666470.rdf
Name: date
Units: unitless
Description: <p>Date data were collected; mm/dd/yy</p>
http://lod.bco-dmo.org/id/dataset-parameter/666471.rdf
Name: time
Units: unitless
Description: <p>Time data were collected; HH:MM</p>
http://lod.bco-dmo.org/id/dataset-parameter/666472.rdf
Name: pH_1_1m
Units: pH
Description: <p>In situ pH on the total hydrogen ion scale; 3 x n matrix; data collected at 1.1m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666473.rdf
Name: pH_0_5m
Units: pH
Description: <p>In situ pH on the total hydrogen ion scale; 3 x n matrix; data collected at 0.5m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666474.rdf
Name: pH_0_3m
Units: pH
Description: <p>In situ pH on the total hydrogen ion scale; 3 x n matrix; data collected at 0.3m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666475.rdf
Name: temp_1_1m
Units: celsius
Description: <p>Temperature in Celsius; 3 x n matrix; data collected at 1.1m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666476.rdf
Name: temp_0_5m
Units: celsius
Description: <p>Temperature in Celsius; 3 x n matrix; data collected at 0.5m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666477.rdf
Name: temp_0_3m
Units: celsius
Description: <p>Temperature in Celsius; 3 x n matrix; data collected at 0.3m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666478.rdf
Name: DO_1_1m
Units: umol/kg
Description: <p>Dissolved O2; 3 x n matrix; data collected at 1.1m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666479.rdf
Name: DO_0_5m
Units: umol/kg
Description: <p>Dissolved O2; 3 x n matrix; data collected at 0.5m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666480.rdf
Name: DO_0_3m
Units: umol/kg
Description: <p>Dissolved O2; 3 x n matrix; data collected at 0.3m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666481.rdf
Name: OMEGA_1_1m
Units: unitless
Description: <p>Aragonite Saturation State; 3 x n matrix; data collected at 1.1m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666482.rdf
Name: OMEGA_0_5m
Units: unitless
Description: <p>Aragonite Saturation State; 3 x n matrix; data collected at 0.5m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666483.rdf
Name: OMEGA_0_3m
Units: unitless
Description: <p>Aragonite Saturation State; 3 x n matrix; data collected at 0.3m above the benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666484.rdf
Name: PAR
Units: umol photons m-2 s-1
Description: <p>Photosynthetically Available Radiation</p>
http://lod.bco-dmo.org/id/dataset-parameter/666485.rdf
Name: pressure
Units: decibars
Description: <p>Pressure; 3 x n matrix.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666486.rdf
Name: current_speed
Units: meters per second
Description: <p>Current speed at 1.4 m above benthos.</p>
http://lod.bco-dmo.org/id/dataset-parameter/666487.rdf
Name: salinity
Units: practical salinity units
Description: <p>Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/666488.rdf
Name: NCP
Units: mmol O2 m-2 hr-1
Description: <p>Net Community Production</p>
http://lod.bco-dmo.org/id/dataset-parameter/666489.rdf
Name: NCC_Q_0_8
Units: mmol CaCO3 m-2 hr-1
Description: <p>Net Community Calcification; 5 x n matrix; NCC value calculated using Q of 0.8</p>
http://lod.bco-dmo.org/id/dataset-parameter/666490.rdf
Name: NCC_Q_0_9
Units: mmol CaCO3 m-2 hr-1
Description: <p>Net Community Calcification; 5 x n matrix; NCC value calculated using Q of 0.9</p>
http://lod.bco-dmo.org/id/dataset-parameter/666491.rdf
Name: NCC_Q_1_0
Units: mmol CaCO3 m-2 hr-1
Description: <p>Net Community Calcification; 5 x n matrix; NCC value calculated using Q of 1.0</p>
http://lod.bco-dmo.org/id/dataset-parameter/666492.rdf
Name: NCC_Q_1_1
Units: mmol CaCO3 m-2 hr-1
Description: <p>Net Community Calcification; 5 x n matrix; NCC value calculated using Q of 1.1</p>
http://lod.bco-dmo.org/id/dataset-parameter/666493.rdf
Name: NCC_Q_1_2
Units: mmol CaCO3 m-2 hr-1
Description: <p>Net Community Calcification; 5 x n matrix; NCC value calculated using Q of 1.2</p>
http://lod.bco-dmo.org/id/dataset-parameter/666494.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>Date/Time (UTC) ISO formatted</p>
http://lod.bco-dmo.org/id/dataset-parameter/668554.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude; N is positive.</p>
http://lod.bco-dmo.org/id/dataset-parameter/668555.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude; E is positive</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
442387
https://darchive.mblwhoilibrary.org/bitstream/1912/24033/1/dataset-666280_benthic-and-acidification-data-palmyra-atoll__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.666280.1
download
onLine
dataset
<p>This dataset was collected using the Benthic Ecosystem and Acidification Measuring System (BEAMS). The details of this technique and dataset can be in the reference provided below. BEAMS uses autonomous sensors to quantify mean gradients of pH and O2&nbsp;and the current velocity profile in the BBL to calculate benthic fluxes of O2&nbsp;(NCP) and TA (NCC). The NCP and NCC provided here represent metabolic rates under completely natural (e.g. flow and light) conditions.</p>
Specified by the Principal Investigator(s)
<p>Questionable rates have been removed through a quality control procedure described in detail in the reference above. Briefly, 1) measurements when the benthic boundary layer was stratified were removed, and 2) Spikes in the data were removed based on the observed DeltapH/DeltaO2&nbsp;relationship.</p>
<p><strong>BCO-DMO Data Processing Notes:</strong></p>
<p>-combined 2 datasets (one from each site) into one file<br />
-replaced "NaN" with "nd"<br />
-separated date and time into two columns<br />
-reformatted column names to comply with BCO-DMO standards</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Flow meter
Flow meter
PI Supplied Instrument Name: Flow meter PI Supplied Instrument Description:Used by the Benthic Ecosystem and Acidification Measuring System (BEAMS) Instrument Name: Flow Meter Instrument Short Name:Flow Meter Instrument Description: General term for a sensor that quantifies the rate at which fluids (e.g. water or air) pass through sensor packages, instruments, or sampling devices. A flow meter may be mechanical, optical, electromagnetic, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/388/
Light Meter
Light Meter
PI Supplied Instrument Name: Light Meter PI Supplied Instrument Description:Used by the Benthic Ecosystem and Acidification Measuring System (BEAMS) Instrument Name: Light Meter Instrument Short Name:Light Meter Instrument Description: Light meters are instruments that measure light intensity. Common units of measure for light intensity are umol/m2/s or uE/m2/s (micromoles per meter squared per second or microEinsteins per meter squared per second). (example: LI-COR 250A)
autonomous oxygen sensor
autonomous oxygen sensor
PI Supplied Instrument Name: autonomous oxygen sensor PI Supplied Instrument Description:Used by the Benthic Ecosystem and Acidification Measuring System (BEAMS) Instrument Name: Oxygen Sensor Instrument Short Name:Dissolved Oxygen Sensor Instrument Description: An electronic device that measures the proportion of oxygen (O2) in the gas or liquid being analyzed
autonomous pH sensor
autonomous pH sensor
PI Supplied Instrument Name: autonomous pH sensor PI Supplied Instrument Description:Used by the Benthic Ecosystem and Acidification Measuring System (BEAMS) Instrument Name: pH Sensor Instrument Short Name:pH Sensor Instrument Description: An instrument that measures the hydrogen ion activity in solutions.
The overall concentration of hydrogen ions is inversely related to its pH. The pH scale ranges from 0 to 14 and indicates whether acidic (more H+) or basic (less H+).
Deployment: BEAMS_Palmyra
BEAMS_Palmyra
shoreside Palmyra
shoreside
BEAMS_Palmyra
Yuichiro Takeshita
Carnegie Institution for Science
shoreside Palmyra
shoreside