http://lod.bco-dmo.org/id/dataset/670458
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-12-15
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Benthic foraminiferal abundances of Mud Patch multicores from R/V Endeavor EN524 in the continental shelf off New England; 40.43 N 70.5 W from May 2013 (OA, Hypoxia and Warming project)
2016-12-16
publication
2016-12-16
revision
BCO-DMO Linked Data URI
2016-12-16
creation
http://lod.bco-dmo.org/id/dataset/670458
Joan M. Bernhard
Woods Hole Oceanographic Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Bernhard, J. M. (2016) Benthic foraminiferal abundances of Mud Patch multicores from R/V Endeavor EN524 in the continental shelf off New England; 40.43 N 70.5 W from May 2013 (OA, Hypoxia and Warming project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2016-12-16 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/670458 [access date]
Benthic foraminiferal abundances from Mud Patch multicores Dataset Description: <p>This dataset includes abundance data of benthic forams collected in the Mud Patch.</p>
<p>To serve this dataset on BCO-DMO, the original Excel multi-tiered table had to be extensively re-formatted. Access the <a href="http://dmoserv3.bco-dmo.org/data/OA_Hypoxia/In_situ_foram_density_data_per_10cc_v2_FINAL.xlsx">originally formatted Excel sheet</a>.</p> Methods and Sampling: <p>Foraminiferal bearing sediments were collected using MC800 multicorer, and sliced into selected 1-cm intervals. For samples collected on EN524, surface samples were incubated in CellTracker Green CMFDA. After fixation in buffered formalin, sediments were sieved and all foraminifera were picked from the &gt;125 µm fraction. Specimens from surface samples were examined wet with a Leica MZFLIII epifluorescence microscope to distinguish living from dead individuals. All “hardshelled” specimens were air dried on micropaleontological slides; “softshelled” specimens were kept in small vials containing formalin. The core collected on OC326 was an archival core and not incubated in CellTracker Green or fixed in formalin.</p>
<p>Values presented are number of specimens per 10 cubic centimeters. Counts are not given because picked samples varied in volume.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1219948 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1219948
completed
Joan M. Bernhard
Woods Hole Oceanographic Institution
508-289-3480
Department of Geology and Geophysics Woods Hole Oceanographic Institution, MS#52
Woods Hole
MA
02543
USA
jbernhard@whoi.edu
pointOfContact
asNeeded
Unknown
cruise_id
sample
multicore
date
time
lat
lon
depth_w
depth_sediment_core
specimen_type
species
abundance
yrday_utc
ISO_DateTime_UTC
Leica MZFLIII epifluorescence microscope
MC800 multicorer
theme
None, User defined
cruise_id
sample identification
date
time of day
latitude
longitude
depth_w
depth core
sample description
species
abundance
UTC day of year and decimal time
ISO_DateTime_UTC
featureType
BCO-DMO Standard Parameters
Fluorescence Microscope
Multi Corer
instrument
BCO-DMO Standard Instruments
EN524
OC326
service
Deployment Activity
continental shelf off New England; 40.43 N 70.5 W
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
Ocean Acidification, Hypoxia and Warming: Experimental Investigations into Compounded Effects of Global Change on Benthic Foraminifera
https://osprey.bco-dmo.org/project/2267
Ocean Acidification, Hypoxia and Warming: Experimental Investigations into Compounded Effects of Global Change on Benthic Foraminifera
<p><strong>from the NSF award abstract: </strong></p>
<p>The average sea surface temperature (SST) has increased over the last 100 years, rising atmospheric partial pressure of carbon dioxide (pCO2) is lowering the pH of the oceans, and the extent and intensity of low-oxygen bottom waters is growing, at least in certain regions. The biological impacts of these ongoing changes -- warming, acidification, and hypoxia -- have each been studied independently, but few studies have explored the possible interactions among these stressors.</p>
<p>This research, led by a scientist from the Woods Hole Oceanographic Institution, studies the compounded effects of ocean acidification, hypoxia, and warming on an assemblage of benthic foraminifera collected from the continental shelf off New England. Foraminifera are an ideal organism for this work because they (1) are relatively small, allowing experimentation on statistically significant populations; (2) have both calcareous and non-calcareous representatives; (3) are relatively short-lived so experiments include a major portion of their life cycle; (4) include aerobes and anaerobes; and (5) provide a fossil record allowing comparisons across time. Laboratory culturing experiments will be used to determine the response of benthic foraminifera, in terms of survival and growth, to co-varying parameters of pH and oxygen, and to explore the influence of increased temperature on these responses. The researchers will examine the relative effects of higher pCO2, lower [O2], and higher temperature (T) on both calcareous and non-calcareous benthic foraminifera. In addition, they will examine the pre-Industrial benthic foraminiferal assemblage at the field site, and will compare that assemblage to those produced in the experiments under pre-Industrial (lower than current day) and elevated pCO2 levels.</p>
OA, Hypoxia and Warming
largerWorkCitation
project
eng; USA
biota
oceans
continental shelf off New England; 40.43 N 70.5 W
2016-12-16
continental shelf off New England
0
BCO-DMO catalogue of parameters from Benthic foraminiferal abundances of Mud Patch multicores from R/V Endeavor EN524 in the continental shelf off New England; 40.43 N 70.5 W from May 2013 (OA, Hypoxia and Warming project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/670498.rdf
Name: cruise_id
Units: unitless
Description: <p>cruise identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/670499.rdf
Name: sample
Units: unitless
Description: <p>sample identifier: cruise-id_ event-number_core-type_sediment-depth_live-or-dead: CTG = core designated for CellTracker Green processing; DC= core designated for downcore analyses</p>
http://lod.bco-dmo.org/id/dataset-parameter/670500.rdf
Name: multicore
Units: unitless
Description: <p>multicore identifier: cruise id_ event number(_core type)</p>
http://lod.bco-dmo.org/id/dataset-parameter/670501.rdf
Name: date
Units: unitless
Description: <p>date formatted as yyyy-mm-dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/670502.rdf
Name: time
Units: unitless
Description: <p>UTC time formatted as HH:MM</p>
http://lod.bco-dmo.org/id/dataset-parameter/670503.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/670504.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/670505.rdf
Name: depth_w
Units: meters
Description: <p>depth of water</p>
http://lod.bco-dmo.org/id/dataset-parameter/670506.rdf
Name: depth_sediment_core
Units: centimeters
Description: <p>sample depth range of with the multicore</p>
http://lod.bco-dmo.org/id/dataset-parameter/670507.rdf
Name: specimen_type
Units: unitless
Description: <p>whether cells were were incubated in CellTracker Green or non-fluorescent</p>
http://lod.bco-dmo.org/id/dataset-parameter/670508.rdf
Name: species
Units: unitless
Description: <p>foraminiferan species</p>
http://lod.bco-dmo.org/id/dataset-parameter/670509.rdf
Name: abundance
Units: number of specimens per 10 cubic centimeters
Description: <p>density of foraminiferans in samples</p>
http://lod.bco-dmo.org/id/dataset-parameter/670629.rdf
Name: yrday_utc
Units: julian day and fraction of day
Description: <p>UTC day and decimal time:eg. 326.5 for the 326th day of the year or November 22 at 1200 hours (noon)</p>
http://lod.bco-dmo.org/id/dataset-parameter/670630.rdf
Name: ISO_DateTime_UTC
Units: year;month;day;hour;minute;second
Description: <p>Date/Time (UTC) ISO formatted based on ISO 8601:2004(E) with format YYYY-mm-ddTHH:MM:SS[.xx]Z</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
27560
https://datadocs.bco-dmo.org/file/XYYPvDGFXRXqQy/foram_density.csv
foram_density.csv
Primary data file for dataset ID 670458
download
https://osprey.bco-dmo.org/dataset/670458/data/download
download
onLine
dataset
<p>Foraminiferal bearing sediments were collected using MC800 multicorer, and sliced into selected 1-cm intervals. For samples collected on EN524, surface samples were incubated in CellTracker Green CMFDA. After fixation in buffered formalin, sediments were sieved and all foraminifera were picked from the &gt;125 µm fraction. Specimens from surface samples were examined wet with a Leica MZFLIII epifluorescence microscope to distinguish living from dead individuals. All “hardshelled” specimens were air dried on micropaleontological slides; “softshelled” specimens were kept in small vials containing formalin. The core collected on OC326 was an archival core and not incubated in CellTracker Green or fixed in formalin.</p>
<p>Values presented are number of specimens per 10 cubic centimeters. Counts are not given because picked samples varied in volume.</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing Notes:</strong><br />
- added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions<br />
- replaced spaces with underscores<br />
- reformatted the data to form a flat table<br />
- added cruise_id column<br />
- version 2017-01-25 replaced version 2016-12-13: in species column,&nbsp;"Total_specimens_#/cc" was replaced with "Total_specimens_#/10cc"</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Leica MZFLIII epifluorescence microscope
Leica MZFLIII epifluorescence microscope
PI Supplied Instrument Name: Leica MZFLIII epifluorescence microscope PI Supplied Instrument Description:To examine specimens Instrument Name: Fluorescence Microscope Instrument Short Name: Instrument Description: Instruments that generate enlarged images of samples using the phenomena of fluorescence and phosphorescence instead of, or in addition to, reflection and absorption of visible light. Includes conventional and inverted instruments. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB06/
MC800 multicorer
MC800 multicorer
PI Supplied Instrument Name: MC800 multicorer Instrument Name: Multi Corer Instrument Short Name:Multi Corer Instrument Description: The Multi Corer is a benthic coring device used to collect multiple, simultaneous, undisturbed sediment/water samples from the seafloor. Multiple coring tubes with varying sampling capacity depending on tube dimensions are mounted in a frame designed to sample the deep ocean seafloor. For more information, see Barnett et al. (1984) in Oceanologica Acta, 7, pp. 399-408. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/51/
Cruise: EN524
EN524
R/V Endeavor
Community Standard Description
International Council for the Exploration of the Sea
R/V Endeavor
vessel
EN524
Joan M. Bernhard
Woods Hole Oceanographic Institution
Cruise: OC326
OC326
R/V Oceanus
Community Standard Description
International Council for the Exploration of the Sea
R/V Oceanus
vessel
OC326
Dr Lloyd Keigwin
Woods Hole Oceanographic Institution
R/V Endeavor
Community Standard Description
International Council for the Exploration of the Sea
R/V Endeavor
vessel
R/V Oceanus
Community Standard Description
International Council for the Exploration of the Sea
R/V Oceanus
vessel