http://lod.bco-dmo.org/id/dataset/671225
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2016-12-27
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Solid phase chemistry from push cores taken during R/V Atlantis cruise AT26-24 at the Dorado Outcrop near Cocos Ridge in December of 2014 (Dorado Outcrop project)
2016-12-27
publication
2016-12-27
revision
BCO-DMO Linked Data URI
2016-12-27
creation
http://lod.bco-dmo.org/id/dataset/671225
C. Geoffrey Wheat
University of Alaska Fairbanks
principalInvestigator
Andrew Fisher
University of California-Santa Cruz
principalInvestigator
Samuel Hulme
Moss Landing Marine Laboratories
principalInvestigator
James McManus
University of Akron
principalInvestigator
Beth N. Orcutt
Bigelow Laboratory for Ocean Sciences
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Wheat, C., Fisher, A., Hulme, S., McManus, J., Orcutt, B. N. (2016) Solid phase chemistry from push cores taken during R/V Atlantis cruise AT26-24 at the Dorado Outcrop near Cocos Ridge in December of 2014 (Dorado Outcrop project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2016-12-27 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/671225 [access date]
Solid phase chemistry from push cores Dataset Description: <p>This dataset contains concentrations of calcium carbonate (CaCO3), total inorganic carbon (TIC), organic carbon (OC), nitrogen (N), d13C, and refractory concentrations of various metals (Fe, Cr, Cu, Mn, Zn). Push cores were collected during the&nbsp;R/V Atlantis cruise AT26-24 by the submersible&nbsp;Alvin in December of 2014.</p> Methods and Sampling: <p>Push core sampling took place at Dorado Outcrop off the west coast of Costa Rica in the Pacific Ocean&nbsp;during the R/V&nbsp;Atlantis&nbsp;cruise &nbsp;AT26-24. &nbsp;For more information about operations of this cruise see the cruise page&nbsp;which contains a link to the cruise report (<a href="http://www.bco-dmo.org/deployment/627856" target="_blank">AT26-24</a>).&nbsp;</p>
<p>Total inorganic carbon (TIC) was measured using coulometry and CaCO3 is calculated from this value.&nbsp;Organic carbon (OC) and nitrogen (N) were measured on a&nbsp;Perkin Elmer&nbsp;Series II 2400 CHNS/O analyzer.&nbsp;The Fe, Cr, Cu, Mn, and Zn represent results from dithionite extractions (see Roy et al., 2012, Continental Shelf Research, 54, 67-79).&nbsp;Metals were analyzed by Inductively Coupled Plasma Optical Emission Spectrophotometer (ICPOES) at the University of Akron.&nbsp;d13C was measured on a Carlo Erba NA-1500 elemental analyzer connected to a DeltaPlus XL mass spectrometer at Oregon State University.</p>
<p>&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1130146 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1130146
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1131210 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1131210
completed
C. Geoffrey Wheat
University of Alaska Fairbanks
831-633-7033
Institute of Marine Science P. O. Box 475
Moss Landing
CA
95039
USA
wheat@mbari.org
pointOfContact
Andrew Fisher
University of California-Santa Cruz
831-459-5598
E&MS Building, Room A232 1156 High Street
Santa Cruz
CA
95064
USA
afisher@ucsc.edu
pointOfContact
Samuel Hulme
Moss Landing Marine Laboratories
831-771-4454
8272 Moss Landing Rd.
Moss Landing
CA
95039
USA
shulme@mlml.calstate.edu
pointOfContact
James McManus
University of Akron
207-315-2567, ext. 307
60 Bigelow Drive
East Boothbay
ME
04544
USA
mcmanusjim@icloud.com
pointOfContact
Beth N. Orcutt
Bigelow Laboratory for Ocean Sciences
207-315-2567 ext 312
60 Bigelow Drive PO Box 380
East Boothbay
Maine
04544
USA
borcutt@bigelow.org
pointOfContact
asNeeded
Unknown
core_id
dive_id
dive_date
dive_lat
dive_lon
top_depth
bottom_depth
depth
CaCO3
CaCO3_stdev
TIC
TIC_stdev
OC
OC_stdev
N
N_stdev
Fe_R
Fe_R_stdev
Cr_R
Cr_R_stdev
Cu_R
Cu_R_stdev
Mn_R
Mn_R_stdev
Zn_R
Zn_R_stdev
d13C
d13C_stdev
Perkin Elmer Series II 2400 CHNS/O analyzer
Carlo Erba NA-1500 elemental analyzer
Inductively Coupled Plasma Optical Emission Spectrophotometer (ICPOES)
DeltaPlus XL mass spectrometer
theme
None, User defined
core id
dive_id
date
latitude
longitude
depth core
Calcium Carbonate
dissolved inorganic Carbon
organic carbon
trace element concentration
trace metal concentration
d13C
featureType
BCO-DMO Standard Parameters
Elemental Analyzer
Elemental Analyzer
Inductively Coupled Plasma Optical Emission Spectrometer
Mass Spectrometer
Push Corer
instrument
BCO-DMO Standard Instruments
AT26-24
AT26-24_Alvin_Dives
service
Deployment Activity
Dorado Outcrop near Cocos Ridge; (87 06'W, 9 50'N)
Dorado Outcrop
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Center for Dark Energy Biosphere Investigations
http://www.darkenergybiosphere.org
Center for Dark Energy Biosphere Investigations
The mission of the Center for Dark Energy Biosphere Investigations (C-DEBI) is to explore life beneath the seafloor and make transformative discoveries that advance science, benefit society, and inspire people of all ages and origins.
C-DEBI provides a framework for a large, multi-disciplinary group of scientists to pursue fundamental questions about life deep in the sub-surface environment of Earth. The fundamental science questions of C-DEBI involve exploration and discovery, uncovering the processes that constrain the sub-surface biosphere below the oceans, and implications to the Earth system. What type of life exists in this deep biosphere, how much, and how is it distributed and dispersed? What are the physical-chemical conditions that promote or limit life? What are the important oxidation-reduction processes and are they unique or important to humankind? How does this biosphere influence global energy and material cycles, particularly the carbon cycle? Finally, can we discern how such life evolved in geological settings beneath the ocean floor, and how this might relate to ideas about the origin of life on our planet?
C-DEBI's scientific goals are pursued with a combination of approaches:
(1) coordinate, integrate, support, and extend the research associated with four major programs—Juan de Fuca Ridge flank (JdF), South Pacific Gyre (SPG), North Pond (NP), and Dorado Outcrop (DO)—and other field sites;
(2) make substantial investments of resources to support field, laboratory, analytical, and modeling studies of the deep subseafloor ecosystems;
(3) facilitate and encourage synthesis and thematic understanding of submarine microbiological processes, through funding of scientific and technical activities, coordination and hosting of meetings and workshops, and support of (mostly junior) researchers and graduate students; and
(4) entrain, educate, inspire, and mentor an interdisciplinary community of researchers and educators, with an emphasis on undergraduate and graduate students and early-career scientists.
Note: Katrina Edwards was a former PI of C-DEBI; James Cowen is a former co-PI.
Data Management:
C-DEBI is committed to ensuring all the data generated are publically available and deposited in a data repository for long-term storage as stated in their Data Management Plan (PDF) and in compliance with the NSF Ocean Sciences Sample and Data Policy. The data types and products resulting from C-DEBI-supported research include a wide variety of geophysical, geological, geochemical, and biological information, in addition to education and outreach materials, technical documents, and samples. All data and information generated by C-DEBI-supported research projects are required to be made publically available either following publication of research results or within two (2) years of data generation.
To ensure preservation and dissemination of the diverse data-types generated, C-DEBI researchers are working with BCO-DMO Data Managers make data publicly available online. The partnership with BCO-DMO helps ensure that the C-DEBI data are discoverable and available for reuse. Some C-DEBI data is better served by specialized repositories (NCBI's GenBank for sequence data, for example) and, in those cases, BCO-DMO provides dataset documentation (metadata) that includes links to those external repositories.
C-DEBI
largerWorkCitation
program
Discovery, sampling, and quantification of flows from cool yet massive ridge-flank hydrothermal springs on Dorado Outcrop, eastern Pacific Ocean
http://www.darkenergybiosphere.org/research/dorado.html
Discovery, sampling, and quantification of flows from cool yet massive ridge-flank hydrothermal springs on Dorado Outcrop, eastern Pacific Ocean
<p><em>Description from NSF award abstract:</em><br />
Pristine fluids from a typical ridge-flank hydrothermal system have never been sampled, mainly because it has not been possible to locate a site of focused discharge where representative samples could be collected. The PIs have located a small basement feature, Dorado outcrop, on 23 m.y.-old seafloor on the eastern flank of the East Pacific Rise that they plan to sample to determine the fluid composition, and to assess the rate of discharge from the outcrop, so that they can quantify the chemical impact of this hydrothermal system. They plan an 18-day expedition that combines the surveying capabilities of the AUV Sentry (bathymetric, sub-bottom sonar, photo mosaics, water column anomalies) and an ocean-class vessel capable of collecting high-quality multi-beam data and CTD samples, and supporting the survey and sampling capabilities of the ROV Jason II for collection of spring and plume fluids, heat flow data, sediment push cores, and still and video photography. These data and samples will be combined hopefully to generate the first well-constrained estimates of hydrothermal flows from Dorado outcrop. This expedition will result in the collection of samples and data from a "fire hose" of ridge-flank, hydrothermal system, challenging the commonly held view that discharge from ridge flank hydrothermal systems occurs primarily from diffuse seeps.</p>
Dorado Outcrop
largerWorkCitation
project
eng; USA
oceans
Dorado Outcrop near Cocos Ridge; (87 06'W, 9 50'N); Dorado Outcrop
2016-12-27
Dorado Outcrop near Cocos Ridge (9N, 87W)
0
BCO-DMO catalogue of parameters from Solid phase chemistry from push cores taken during R/V Atlantis cruise AT26-24 at the Dorado Outcrop near Cocos Ridge in December of 2014 (Dorado Outcrop project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/671362.rdf
Name: core_id
Units: unitless
Description: <p>Gravity core identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/671363.rdf
Name: dive_id
Units: unitless
Description: <p>Alvin submersible dive identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/671364.rdf
Name: dive_date
Units: unitless
Description: <p>Alvin submersible dive date in format yyyy-mm-dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/671365.rdf
Name: dive_lat
Units: decimal degrees
Description: <p>Approximate latitude of Alvin Dive.</p>
http://lod.bco-dmo.org/id/dataset-parameter/671366.rdf
Name: dive_lon
Units: decimal degrees
Description: <p>Approximate longitude of Alvin dive.</p>
http://lod.bco-dmo.org/id/dataset-parameter/671367.rdf
Name: top_depth
Units: centimeters
Description: <p>Top of sample interval in core</p>
http://lod.bco-dmo.org/id/dataset-parameter/671368.rdf
Name: bottom_depth
Units: centimeters
Description: <p>Bottom of sample interval in core</p>
http://lod.bco-dmo.org/id/dataset-parameter/671369.rdf
Name: depth
Units: centimeters
Description: <p>Middle of sample interval in core</p>
http://lod.bco-dmo.org/id/dataset-parameter/671370.rdf
Name: CaCO3
Units: percent
Description: <p>Average concentration of calcium carbonate by weight</p>
http://lod.bco-dmo.org/id/dataset-parameter/671371.rdf
Name: CaCO3_stdev
Units: percent
Description: <p>Standard deviation of the concentration of calcium carbonate by weight</p>
http://lod.bco-dmo.org/id/dataset-parameter/671372.rdf
Name: TIC
Units: percent
Description: <p>Average concentration of total inorganic carbon by weight</p>
http://lod.bco-dmo.org/id/dataset-parameter/671373.rdf
Name: TIC_stdev
Units: percent
Description: <p>Standard deviation of the concentration of total inorganic carbon by weight</p>
http://lod.bco-dmo.org/id/dataset-parameter/671374.rdf
Name: OC
Units: percent
Description: <p>Average concentration of organic carbon (OC) by weight</p>
http://lod.bco-dmo.org/id/dataset-parameter/671375.rdf
Name: OC_stdev
Units: percent
Description: <p>Standard deviation of the concentration of organic carbon (OC) by weight</p>
http://lod.bco-dmo.org/id/dataset-parameter/671376.rdf
Name: N
Units: percent
Description: <p>Average concentration of nitrogen by weight</p>
http://lod.bco-dmo.org/id/dataset-parameter/671377.rdf
Name: N_stdev
Units: percent
Description: <p>Standard deviation of the concentration of nitrogen by weight</p>
http://lod.bco-dmo.org/id/dataset-parameter/671378.rdf
Name: Fe_R
Units: percent
Description: <p>Average refractory concentration of iron</p>
http://lod.bco-dmo.org/id/dataset-parameter/671379.rdf
Name: Fe_R_stdev
Units: percent
Description: <p>Standard deviation of the refractory concentration of iron</p>
http://lod.bco-dmo.org/id/dataset-parameter/671380.rdf
Name: Cr_R
Units: miligrams per gram (mg/g)
Description: <p>Average refractory concentration of chromium</p>
http://lod.bco-dmo.org/id/dataset-parameter/671381.rdf
Name: Cr_R_stdev
Units: miligrams per gram (mg/g)
Description: <p>Standard deviation of the refractory concentration of chromium</p>
http://lod.bco-dmo.org/id/dataset-parameter/671382.rdf
Name: Cu_R
Units: miligrams per gram (mg/g)
Description: <p>Average refractory concentration of copper</p>
http://lod.bco-dmo.org/id/dataset-parameter/671383.rdf
Name: Cu_R_stdev
Units: miligrams per gram (mg/g)
Description: <p>Standard deviation of the refractory concentration of copper</p>
http://lod.bco-dmo.org/id/dataset-parameter/671384.rdf
Name: Mn_R
Units: percent
Description: <p>Average refractory concentration of manganese</p>
http://lod.bco-dmo.org/id/dataset-parameter/671385.rdf
Name: Mn_R_stdev
Units: percent
Description: <p>Standard deviation of the refractory concentration of manganese</p>
http://lod.bco-dmo.org/id/dataset-parameter/671386.rdf
Name: Zn_R
Units: miligrams per gram (mg/g)
Description: <p>Average refractory concentration of zinc</p>
http://lod.bco-dmo.org/id/dataset-parameter/671387.rdf
Name: Zn_R_stdev
Units: miligrams per gram (mg/g)
Description: <p>Standard deviation of the refractory concentration of zinc</p>
http://lod.bco-dmo.org/id/dataset-parameter/671388.rdf
Name: d13C
Units: permil (0/00)
Description: <p>Ratio of stable isotopes 13C:12C; reference standard Vienna Pee Dee Belemnite (VPDB)</p>
http://lod.bco-dmo.org/id/dataset-parameter/671389.rdf
Name: d13C_stdev
Units: permil (0/00)
Description: <p>Standard deviation of the ratio of stable isotopes 13C:12C; reference standard Vienna Pee Dee Belemnite (VPDB)</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
12510
https://datadocs.bco-dmo.org/file/WWW1r6DUx012og/PushSolidPhase.csv
PushSolidPhase.csv
Primary data file for dataset ID 671225
download
https://osprey.bco-dmo.org/dataset/671225/data/download
download
onLine
dataset
<p>Push core sampling took place at Dorado Outcrop off the west coast of Costa Rica in the Pacific Ocean&nbsp;during the R/V&nbsp;Atlantis&nbsp;cruise &nbsp;AT26-24. &nbsp;For more information about operations of this cruise see the cruise page&nbsp;which contains a link to the cruise report (<a href="http://www.bco-dmo.org/deployment/627856" target="_blank">AT26-24</a>).&nbsp;</p>
<p>Total inorganic carbon (TIC) was measured using coulometry and CaCO3 is calculated from this value.&nbsp;Organic carbon (OC) and nitrogen (N) were measured on a&nbsp;Perkin Elmer&nbsp;Series II 2400 CHNS/O analyzer.&nbsp;The Fe, Cr, Cu, Mn, and Zn represent results from dithionite extractions (see Roy et al., 2012, Continental Shelf Research, 54, 67-79).&nbsp;Metals were analyzed by Inductively Coupled Plasma Optical Emission Spectrophotometer (ICPOES) at the University of Akron.&nbsp;d13C was measured on a Carlo Erba NA-1500 elemental analyzer connected to a DeltaPlus XL mass spectrometer at Oregon State University.</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
<p>The data have not been processed further.</p>
<p><strong>BCO-DMO Processing Notes:</strong></p>
<p>* added a conventional header with dataset name, PI name, version date<br />
*&nbsp;modified parameter names to conform with BCO-DMO naming conventions<br />
*&nbsp;BD indicates Below Detection<br />
*&nbsp;blank values replaced with no data value 'nd'<br />
* added dive_date,dive_id,dive_lat,dive_lon from information in the cruise report (Table 4)</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Perkin Elmer Series II 2400 CHNS/O analyzer
Perkin Elmer Series II 2400 CHNS/O analyzer
PI Supplied Instrument Name: Perkin Elmer Series II 2400 CHNS/O analyzer Instrument Name: Elemental Analyzer Instrument Short Name: Instrument Description: Instruments that quantify carbon, nitrogen and sometimes other elements by combusting the sample at very high temperature and assaying the resulting gaseous oxides. Usually used for samples including organic material. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB01/
Carlo Erba NA-1500 elemental analyzer
Carlo Erba NA-1500 elemental analyzer
PI Supplied Instrument Name: Carlo Erba NA-1500 elemental analyzer PI Supplied Instrument Description:Carlo Erba NA-1500 elemental analyzer connected to a DeltaPlus XL mass spectrometer. Instrument Name: Elemental Analyzer Instrument Short Name: Instrument Description: Instruments that quantify carbon, nitrogen and sometimes other elements by combusting the sample at very high temperature and assaying the resulting gaseous oxides. Usually used for samples including organic material. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB01/
Inductively Coupled Plasma Optical Emission Spectrophotometer (ICPOES)
Inductively Coupled Plasma Optical Emission Spectrophotometer (ICPOES)
PI Supplied Instrument Name: Inductively Coupled Plasma Optical Emission Spectrophotometer (ICPOES) Instrument Name: Inductively Coupled Plasma Optical Emission Spectrometer Instrument Short Name:ICP-OES or ICP-AES Instrument Description: Also referred to as an Inductively coupled plasma atomic emission spectroscope (ICP-AES). These instruments pass nebulised samples into an inductively-coupled gas plasma (8-10000 K) where they are atomised and excited. The de-excitation optical emissions at characteristic wavelengths are spectroscopically analysed. It is often used in the detection of trace metals.
DeltaPlus XL mass spectrometer
DeltaPlus XL mass spectrometer
PI Supplied Instrument Name: DeltaPlus XL mass spectrometer Instrument Name: Mass Spectrometer Instrument Short Name:Mass Spec Instrument Description: General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB16/
PI Supplied Instrument Name: Instrument Name: Push Corer Instrument Short Name: Instrument Description: Capable of being performed in numerous environments, push coring is just as it sounds. Push coring is simply pushing the core barrel (often an aluminum or polycarbonate tube) into the sediment by hand. A push core is useful in that it causes very little disturbance to the more delicate upper layers of a sub-aqueous sediment.
Description obtained from: http://web.whoi.edu/coastal-group/about/how-we-work/field-methods/coring/
Cruise: AT26-24
AT26-24
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT26-24
C. Geoffrey Wheat
University of Alaska Fairbanks
http://dmoserv3.whoi.edu/data_docs/C-DEBI/cruise_reports/AT26-24_Dorado_Outcrop_2014_Cruise_Report_reduced.pdf
Report describing AT26-24
Deployment: AT26-24_Alvin_Dives
AT26-24_Alvin_Dives
HOV Alvin
Community Standard Description
International Council for the Exploration of the Sea
HOV Alvin
submarine-manned
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
HOV Alvin
Community Standard Description
International Council for the Exploration of the Sea
HOV Alvin
submarine-manned