http://lod.bco-dmo.org/id/dataset/674407
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-01-11
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Dominant microbe taxa from Florida Keys National Marine Sanctuary, 2009-2012 (HERBVRE project)
2017-01-10
publication
2017-01-10
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-08-17
publication
https://doi.org/10.26008/1912/bco-dmo.674407.1
Deron Burkepile
Florida International University
principalInvestigator
Rebecca Vega Thurber
Florida International University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Burkepile, D., Vega Thurber, R. (2021) Dominant microbe taxa from Florida Keys National Marine Sanctuary, 2009-2012 (HERBVRE project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2017-01-10 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.674407.1 [access date]
Dominant microbe taxa Dataset Description: <p>This dataset contains microbial orders that rose to dominate at least one sample.&nbsp;Values quantify the number of samples in which each order was the most abundant, as well as average metadata values for the samples in which that order became most abundant. Metadata values calculated are temperature, overall community evenness, the cover of all upright algae, tall turf algae, or cyanobacteria, and the average abundance of the dominant taxon.</p>
<p><u>Natural history of the study site:&nbsp;</u><br />
This experiment was conducted in the area of Pickles Reef (24.99430, -80.40650), located east of Key Largo, Florida in the United States. The Florida Keys reef tract consists of a large bank reef system located approximately 8 km offshore of the Florida Keys, USA, and paralleling the island chain. Our study reef is a 5-6 m deep spur and groove reef system within this reef tract. The reefs of the Florida Keys have robust herbivorous fish populations and are relatively oligotrophic. Coral cover on most reefs in the Florida Keys, including our site, is 5-10%, while macroalgal cover averages ~15%, but ranges from 0-70% depending on location and season. Parrotfishes (<em>Scaridae</em>) and surgeonfishes (<em>Acanthuridae</em>) are the dominant herbivores on these reefs as fishing for them was banned in 1981. The other important herbivore on Caribbean reefs, the urchin <em>Diadema antillarum</em>, remains at low densities across the Florida Keys following the mass mortality event in 1982-3.</p>
<p>Published in&nbsp;Nature Communications (2016) doi:<a href="http://dx.doi.org/10.1038/ncomms11833" target="_blank">10.1038/ncomms11833</a>, Supplementary Data 3f.</p>
<p><strong>Related Reference:</strong><br />
Zaneveld, J.R., D.E. Burkepile, A.A. Shantz, C. Pritchard, R. McMinds, J. Payet, R. Welsh, A.M.S. Correa, N.P. Lemoine, S. Rosales, C.E. Fuchs, and R. Vega Thurber (2016) Overfishing, nutrient pollution, and temperature interact to disrupt coral reefs down to microbial scales. Nature Communications 7:11833 <a href="http://www.nature.com/articles/ncomms11833" target="_blank">doi:10.1038/ncomms11833</a> <a href="http://www.nature.com/articles/ncomms11833#supplementary-information" target="_blank">Supplementary Information</a></p> Methods and Sampling:
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1130786 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1130786
completed
Deron Burkepile
Florida International University
805-893-3067
Department of Ecology, Evolution, and Marine Biology
Santa Barbara
CA
93106
USA
dburkepile@ucsb.edu
pointOfContact
Rebecca Vega Thurber
Florida International University
rvegathurber@gmail.com
pointOfContact
asNeeded
Dataset Version: 1
Unknown
display_name
num_samples_dominated
temp
temp_stdev
temp_sem
total_upright_algal_cover
total_upright_algal_cover_stdev
total_upright_algal_cove_sem
tall_turf_cover
tall_turf_cover_stdev
tall_turf_cover_sem
benthic_Cyanobacteria
benthic_Cyanobacteria_stdev
benthic_Cyanobacteria_sem
evenness
evenness_stdev
evenness_sem
abund_dom_taxon
abund_dom_taxon_stdev
abund_dom_taxon_sem
taxonomy
theme
None, User defined
taxon
count
water temperature at measurement depth
standard deviation
standard error
No BCO-DMO term
abundance
featureType
BCO-DMO Standard Parameters
Burkepile_FL_Keys
service
Deployment Activity
Pickles Reef, east of Key Largo, FL
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Cascading interactions of herbivore loss and nutrient enrichment on coral reef macroalgae, corals, and microbial dynamics
https://osprey.bco-dmo.org/project/529590
Cascading interactions of herbivore loss and nutrient enrichment on coral reef macroalgae, corals, and microbial dynamics
<p><em>Description from NSF award abstract:</em><br />
Coral reefs in the Caribbean Sea are undergoing unprecedented declines in coral cover due in large part to climate change, pollution, and reductions in fish biodiversity and abundance. Macroalgae have become abundant on reefs, probably due to decreases in herbivory (e.g., through overfishing) and increases in anthropogenic inputs of nutrients. The spread of macroalgae has negative feedbacks on reef recovery because algae are often superior competitors and suppress growth of both adult and juvenile corals. A majority of reef studies to date have focused on how stressors affect macroorganisms, while relatively few have investigated how these stressors and the resultant algal-dominated states affect microorganisms. Yet, coral reef-associated microbes play significant roles in coral reef ecosystems through biogeochemical cycling and disease. Since microbes are important mutualists of corals as well as potential pathogens, it is important to understand the mechanisms that control their taxonomic and functional diversity.</p>
<p>The goal of this proposal is to quantify how alterations of top-down (removal of herbivorous fish) and bottom-up (inorganic nutrient addition) forces alter macrobial as well as microbial dynamics on coral reefs in order to understand the mechanisms that reinforce coral-depauperate reef systems. This work asks two main questions:</p>
<p>Q1. How do nutrient enrichment and herbivore removal interact to affect benthic algal abundance, coral-algal interactions, and coral survivorship and growth?</p>
<p>Q2. How do nutrient enrichment and herbivore removal affect bacterial abundance, taxonomic diversity, and functional diversity on and within corals?</p>
<p>The proposed research will directly and empirically address many of the current hypotheses about how bottom-up and top-down forces alter reef dynamics. The PIs will investigate: (1) the impact of multiple stressors over several years; (2) impacts on multiple levels of biological organization (from fishes to algae to microbes); and (3) the mechanisms underlying changes in algal-coral microbe interactions. Significantly, the approach will provide the statistical power necessary to distinguish between seasonal- and stress-induced changes in macro- and microbial diversity.</p>
<p><strong>Resulting Publication:</strong><br />
Zaneveld, J.R., D.E. Burkepile, A.A. Shantz, C. Pritchard, R. McMinds, J. Payet, R. Welsh, A.M.S. Correa, N.P. Lemoine, S. Rosales, C.E. Fuchs, and R. Vega Thurber (2016) Overfishing, nutrient pollution, and temperature interact to disrupt coral reefs down to microbial scales. Nature Communications 7:11833 doi:10.1038/ncomms11833.<br />
Access to data via <a href="http://www.nature.com/articles/ncomms11833#supplementary-information" target="_blank">Supplementary Information</a>.</p>
HERBVRE
largerWorkCitation
project
eng; USA
biota
oceans
Pickles Reef, east of Key Largo, FL
-80.4065
-80.4065
24.9943
24.9943
2017-01-10
Key Largo, Florida Keys, USA; N 24.99430, W 080.40650
0
BCO-DMO catalogue of parameters from Dominant microbe taxa from Florida Keys National Marine Sanctuary, 2009-2012 (HERBVRE project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/674949.rdf
Name: display_name
Units: unitless
Description: <p>microbe taxonomic name</p>
http://lod.bco-dmo.org/id/dataset-parameter/674950.rdf
Name: num_samples_dominated
Units: samples
Description: <p>number of samples in which this taxon dominated</p>
http://lod.bco-dmo.org/id/dataset-parameter/674951.rdf
Name: temp
Units: degrees Celsius
Description: <p>temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/674952.rdf
Name: temp_stdev
Units: degrees Celsius
Description: <p>temperature standard deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/674953.rdf
Name: temp_sem
Units: degrees Celsius
Description: <p>temperature standard error</p>
http://lod.bco-dmo.org/id/dataset-parameter/674954.rdf
Name: total_upright_algal_cover
Units: unitless (percent)
Description: <p>total upright algal cover (% cover)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674955.rdf
Name: total_upright_algal_cover_stdev
Units: unitless (percent)
Description: <p>total upright algal cover standard deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/674956.rdf
Name: total_upright_algal_cove_sem
Units: unitless (percent)
Description: <p>total upright algal cover standard error</p>
http://lod.bco-dmo.org/id/dataset-parameter/674957.rdf
Name: tall_turf_cover
Units: unitless (percent)
Description: <p>tall turf cover (% cover)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674958.rdf
Name: tall_turf_cover_stdev
Units: unitless (percent)
Description: <p>tall turf cover standard deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/674959.rdf
Name: tall_turf_cover_sem
Units: unitless (percent)
Description: <p>tall turf cover standard error</p>
http://lod.bco-dmo.org/id/dataset-parameter/674960.rdf
Name: benthic_Cyanobacteria
Units: unitless (percent)
Description: <p>benthic cyanobacteria cover (% cover)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674961.rdf
Name: benthic_Cyanobacteria_stdev
Units: unitless (percent)
Description: <p>benthic cyanobacteria cover standard deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/674962.rdf
Name: benthic_Cyanobacteria_sem
Units: unitless (percent)
Description: <p>benthic cyanobacteria cover standard error</p>
http://lod.bco-dmo.org/id/dataset-parameter/674963.rdf
Name: evenness
Units: dimensionless
Description: <p>evenness (equitability)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674964.rdf
Name: evenness_stdev
Units: dimensionless
Description: <p>evenness standard deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/674965.rdf
Name: evenness_sem
Units: dimensionless
Description: <p>evenness standard error</p>
http://lod.bco-dmo.org/id/dataset-parameter/674966.rdf
Name: abund_dom_taxon
Units: per meter^2
Description: <p>abundance of dominant taxon</p>
http://lod.bco-dmo.org/id/dataset-parameter/674967.rdf
Name: abund_dom_taxon_stdev
Units: per meter^2
Description: <p>abundance of dominant taxon standard deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/674968.rdf
Name: abund_dom_taxon_sem
Units: per meter^2
Description: <p>abundance of dominant taxon standard error</p>
http://lod.bco-dmo.org/id/dataset-parameter/674969.rdf
Name: taxonomy
Units: unitless
Description: <p>taxonomy from QIIME Greengenes 13_8</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
4509
https://darchive.mblwhoilibrary.org/bitstream/1912/27448/1/dataset-674407_suppl-3f-dominant-microbe-taxa__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.674407.1
download
onLine
dataset
<p><strong>BCO-DMO Processing:</strong><br />
- added conventional header with dataset name, PI name, version date, reference information;<br />
- renamed parameters to comply with BCO-DMO naming conventions;<br />
- reduced decimal places from 9 to 2;<br />
- changed N/A to nd (no data).</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: Burkepile_FL_Keys
Burkepile_FL_Keys
Florida Keys National Marine Sanctuary
shoreside
Florida Keys National Marine Sanctuary
shoreside