http://lod.bco-dmo.org/id/dataset/674439
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-01-12
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Parrotfish bite annotations from Florida Keys National Marine Sanctuary, 2009-2013
2021-08-06
publication
2021-08-06
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-08-06
publication
https://doi.org/10.26008/1912/bco-dmo.674439.2
Deron Burkepile
Florida International University
principalInvestigator
Rebecca Vega Thurber
Florida International University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Burkepile, D., Vega Thurber, R. (2021) Parrotfish bite annotations from Florida Keys National Marine Sanctuary, 2009-2013. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2021-08-06 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.674439.2 [access date]
Parrotfish bite annotations Dataset Description: <p>This dataset contains parrotfish bite observations for the study plots at Pickles Reef, Florida Keys National Marine Sanctuary from 2009-2013. Published in Nature Communications (2016) doi:10.1038/ncomms11833, Supplementary Data 2c.</p>
<p><u>Natural history of the study site:&nbsp;</u><br />
This experiment was conducted in the area of Pickles Reef (24.99430, -80.40650), located east of Key Largo, Florida in the United States. The Florida Keys reef tract consists of a large bank reef system located approximately 8 km offshore of the Florida Keys, USA, and paralleling the island chain. Our study reef is a 5-6 m deep spur and groove reef system within this reef tract. The reefs of the Florida Keys have robust herbivorous fish populations and are relatively oligotrophic. Coral cover on most reefs in the Florida Keys, including our site, is 5-10%, while macroalgal cover averages ~15%, but ranges from 0-70% depending on location and season. Parrotfishes (<em>Scaridae</em>) and surgeonfishes (<em>Acanthuridae</em>) are the dominant herbivores on these reefs as fishing for them was banned in 1981. The other important herbivore on Caribbean reefs, the urchin <em>Diadema antillarum</em>, remains at low densities across the Florida Keys following the mass mortality event in 1982-3.</p>
<p><strong>Related Reference:</strong><br />
Zaneveld, J.R., D.E. Burkepile, A.A. Shantz, C. Pritchard, R. McMinds, J. Payet, R. Welsh, A.M.S. Correa, N.P. Lemoine, S. Rosales, C.E. Fuchs, and R. Vega Thurber (2016) Overfishing, nutrient pollution, and temperature interact to disrupt coral reefs down to microbial scales. Nature Communications 7:11833 <a href="http://www.nature.com/articles/ncomms11833" target="_blank">doi:10.1038/ncomms11833</a> <a href="http://www.nature.com/articles/ncomms11833#supplementary-information" target="_blank">Supplementary Information</a></p> Methods and Sampling:
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1130786 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1130786
completed
Deron Burkepile
Florida International University
805-893-3067
Department of Ecology, Evolution, and Marine Biology
Santa Barbara
CA
93106
USA
dburkepile@ucsb.edu
pointOfContact
Rebecca Vega Thurber
Florida International University
rvegathurber@gmail.com
pointOfContact
asNeeded
Dataset Version: 2
Unknown
sample_location_name
latitude
longitude
SampleID
date_collected
ElapsedDays
reassigned_host_taxon_name
mitochondria_count_from_reassigned_taxon
secnd_likely_host_by_mitochondria
mitochondria_count_from_2nd_greatest_host_contributor
Discard_conflicting_host_taxon
Reassign_host_taxon
new_host_taxon_name
storm_damage
sample_type
temp_cat
abs_squared_deviation_from_28
final_tissue_change_score
final_tissue_change_score_base_0
final_tissue_change_percent
tissue_loss
binary_tissue_loss
dead_by_end
parrotfish_bites_by_end
last_sampling_date
photographic_evidence_of_death
theme
None, User defined
site
latitude
longitude
sample identification
date
time_elapsed
taxon
count
flag
sample type
water temperature at measurement depth
No BCO-DMO term
featureType
BCO-DMO Standard Parameters
Camera
instrument
BCO-DMO Standard Instruments
Burkepile_FL_Keys
service
Deployment Activity
Pickles Reef, east of Key Largo, FL
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Cascading interactions of herbivore loss and nutrient enrichment on coral reef macroalgae, corals, and microbial dynamics
https://osprey.bco-dmo.org/project/529590
Cascading interactions of herbivore loss and nutrient enrichment on coral reef macroalgae, corals, and microbial dynamics
<p><em>Description from NSF award abstract:</em><br />
Coral reefs in the Caribbean Sea are undergoing unprecedented declines in coral cover due in large part to climate change, pollution, and reductions in fish biodiversity and abundance. Macroalgae have become abundant on reefs, probably due to decreases in herbivory (e.g., through overfishing) and increases in anthropogenic inputs of nutrients. The spread of macroalgae has negative feedbacks on reef recovery because algae are often superior competitors and suppress growth of both adult and juvenile corals. A majority of reef studies to date have focused on how stressors affect macroorganisms, while relatively few have investigated how these stressors and the resultant algal-dominated states affect microorganisms. Yet, coral reef-associated microbes play significant roles in coral reef ecosystems through biogeochemical cycling and disease. Since microbes are important mutualists of corals as well as potential pathogens, it is important to understand the mechanisms that control their taxonomic and functional diversity.</p>
<p>The goal of this proposal is to quantify how alterations of top-down (removal of herbivorous fish) and bottom-up (inorganic nutrient addition) forces alter macrobial as well as microbial dynamics on coral reefs in order to understand the mechanisms that reinforce coral-depauperate reef systems. This work asks two main questions:</p>
<p>Q1. How do nutrient enrichment and herbivore removal interact to affect benthic algal abundance, coral-algal interactions, and coral survivorship and growth?</p>
<p>Q2. How do nutrient enrichment and herbivore removal affect bacterial abundance, taxonomic diversity, and functional diversity on and within corals?</p>
<p>The proposed research will directly and empirically address many of the current hypotheses about how bottom-up and top-down forces alter reef dynamics. The PIs will investigate: (1) the impact of multiple stressors over several years; (2) impacts on multiple levels of biological organization (from fishes to algae to microbes); and (3) the mechanisms underlying changes in algal-coral microbe interactions. Significantly, the approach will provide the statistical power necessary to distinguish between seasonal- and stress-induced changes in macro- and microbial diversity.</p>
<p><strong>Resulting Publication:</strong><br />
Zaneveld, J.R., D.E. Burkepile, A.A. Shantz, C. Pritchard, R. McMinds, J. Payet, R. Welsh, A.M.S. Correa, N.P. Lemoine, S. Rosales, C.E. Fuchs, and R. Vega Thurber (2016) Overfishing, nutrient pollution, and temperature interact to disrupt coral reefs down to microbial scales. Nature Communications 7:11833 doi:10.1038/ncomms11833.<br />
Access to data via <a href="http://www.nature.com/articles/ncomms11833#supplementary-information" target="_blank">Supplementary Information</a>.</p>
HERBVRE
largerWorkCitation
project
eng; USA
biota
oceans
Pickles Reef, east of Key Largo, FL
-80.4065
-80.4065
24.9943
24.9943
2009-06-22
2013-08-17
Key Largo, Florida Keys, USA; N 24.99430, W 080.40650
0
BCO-DMO catalogue of parameters from Parrotfish bite annotations from Florida Keys National Marine Sanctuary, 2009-2013
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/674892.rdf
Name: sample_location_name
Units: unitless
Description: <p>name of sample collection reef</p>
http://lod.bco-dmo.org/id/dataset-parameter/674893.rdf
Name: latitude
Units: decimal degrees
Description: <p>latitude; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/674894.rdf
Name: longitude
Units: decimal degrees
Description: <p>longitude; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/674895.rdf
Name: SampleID
Units: unitless
Description: <p>sample identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/674896.rdf
Name: date_collected
Units: unitless
Description: <p>date of collection formatted at yyyy-mm-dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/674897.rdf
Name: ElapsedDays
Units: days
Description: <p>number of days since beginning of experiment</p>
http://lod.bco-dmo.org/id/dataset-parameter/674898.rdf
Name: reassigned_host_taxon_name
Units: unitless
Description: <p>reassigned host taxon name</p>
http://lod.bco-dmo.org/id/dataset-parameter/674899.rdf
Name: mitochondria_count_from_reassigned_taxon
Units: mitochondria
Description: <p>mitochondria count from reassigned taxon</p>
http://lod.bco-dmo.org/id/dataset-parameter/674900.rdf
Name: secnd_likely_host_by_mitochondria
Units: unitless
Description: <p>2nd most likely host by mitochondria</p>
http://lod.bco-dmo.org/id/dataset-parameter/674901.rdf
Name: mitochondria_count_from_2nd_greatest_host_contributor
Units: mitochondria
Description: <p>mitochondria count from 2nd greatest host contributor</p>
http://lod.bco-dmo.org/id/dataset-parameter/674902.rdf
Name: Discard_conflicting_host_taxon
Units: unitless
Description: <p>discard conflicting host taxon (yes/no)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674903.rdf
Name: Reassign_host_taxon
Units: unitless
Description: <p>reassigned host taxon (yes/no)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674904.rdf
Name: new_host_taxon_name
Units: unitless
Description: <p>new host taxon name</p>
http://lod.bco-dmo.org/id/dataset-parameter/674905.rdf
Name: storm_damage
Units: unitless
Description: <p>storm damage flag (yes/no)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674906.rdf
Name: sample_type
Units: unitless
Description: <p>sample type</p>
http://lod.bco-dmo.org/id/dataset-parameter/674907.rdf
Name: temp_cat
Units: unitless
Description: <p>temperature category: high (>30 C) mid (24-30 C) or low (<24 C)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674908.rdf
Name: abs_squared_deviation_from_28
Units: degrees Celsius
Description: <p>absolute squared deviation from 28 degrees C. </p>
http://lod.bco-dmo.org/id/dataset-parameter/674909.rdf
Name: final_tissue_change_score
Units: unitless
Description: <p>final tissue change score</p>
http://lod.bco-dmo.org/id/dataset-parameter/674910.rdf
Name: final_tissue_change_score_base_0
Units: unitless
Description: <p>final tissue change score base 0</p>
http://lod.bco-dmo.org/id/dataset-parameter/674911.rdf
Name: final_tissue_change_percent
Units: dimensionless
Description: <p>final tissue change percent</p>
http://lod.bco-dmo.org/id/dataset-parameter/674912.rdf
Name: tissue_loss
Units: unitless
Description: <p>tissue loss</p>
http://lod.bco-dmo.org/id/dataset-parameter/674913.rdf
Name: binary_tissue_loss
Units: unitless
Description: <p>binary tissue loss</p>
http://lod.bco-dmo.org/id/dataset-parameter/674914.rdf
Name: dead_by_end
Units: unitless
Description: <p>whether coral was dead by end of experiment (yes/no)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674915.rdf
Name: parrotfish_bites_by_end
Units: unitless
Description: <p>wether there were parrotfish bites by end of experiment (yes/no)</p>
http://lod.bco-dmo.org/id/dataset-parameter/674916.rdf
Name: last_sampling_date
Units: unitless
Description: <p>last sampling date formatted as yyyy-mm-dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/674917.rdf
Name: photographic_evidence_of_death
Units: unitless
Description: <p>photographic evidence of death (yes/no)</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
92297
https://darchive.mblwhoilibrary.org/bitstream/1912/27419/1/dataset-674439_suppl-2c-parrotfish-bite-annotations__v2.tsv
download
https://doi.org/10.26008/1912/bco-dmo.674439.2
download
onLine
dataset
<p><strong>BCO-DMO Processing:</strong><br />
- added conventional header with dataset name, PI name, version date;<br />
- modified parameter names to conform with BCO-DMO naming conventions;<br />
- reformatted date from m/d/yyyy to ISO_Date: yyyy-mm-dd;<br />
- reduced number of digits for 'abs_squared_deviation_from_28' from 8 to 2;<br />
-&nbsp;replaced 'unknown' and 'null' with 'nd' ('no data');<br />
- renamed 'Env' to 'sample_type'.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/
Deployment: Burkepile_FL_Keys
Burkepile_FL_Keys
Florida Keys National Marine Sanctuary
shoreside
Florida Keys National Marine Sanctuary
shoreside