Sampled gastropod Sacoglossa taxa and collection details for phylogenetic analyses: from Krug et al (2015) Suppl. Table 1 in Syst. Biol. (PLDvFST project)

Website: https://www.bco-dmo.org/dataset/679301
Data Type: Other Field Results
Version:
Version Date: 2017-01-27

Project
» Quantifying larval behavior to reconcile genetic connectivity with biophysical model predictions (PLDvFST)
ContributorsAffiliationRole
Krug, PatrickCalifornia State University Los Angeles (Cal State LA)Principal Investigator
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

This dataset includes species names, sample codes and collection details for sequenced taxa used in phylogenetic analyses. 'nd' signifies no data.

Related Reference:
Supplemental Table 1 from Krug, P.J., Vendetti, J.E., Ellingson, R.A., Trowbridge, C.D., Hirano, Y.M., Trathen*, D.Y., Rodriguez*, A.K., Swennen, C., Wilson, N.G., and A.A. Valdés. Species selection favors dispersive life histories in sea slugs, but higher per-offspring investment drives shifts to short-lived larvae. Systematic Biology (2015) 64(6): 983-999.
DOI: https://doi.org/10.1093/sysbio/syv046

These data are also available from Krug PJ, Vendetti JE, Ellingson RA, Trowbridge CD, Hirano YM, Trathen DY, Rodriguez AK, Swennen C, Wilson NG, Valdés ÁA (2015) Data from: Species selection favors dispersive life histories in sea slugs, but higher per-offspring investment drives shifts to short-lived larvae. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.88mv3.2

Taxa arranged according to traditional systematics as given in Table S2.

Museum identification codes:
AM = Australian Museum (Sydney, Australia) malacology collection
CAS = California Academy of Science invertebrate zoology collection
CPIC = Cal Poly Pomona University invertebrate zoology collection
LACM = Los Angeles County Museum of Natural History malacology collection
ZSM = Zoologisches Forschungsmuseum Alexander Koenig (Germany)


Methods & Sampling

The data were for a global study of diversity in clade Sacoglossa; all temperate and tropical oceans were sampled. Specimens came from the authors' collections or from museum collections.

For full details on sampling and analytical methodology, see Krug et al, Systematic Biology, 2015.


Data Processing Description

BCO-DMO Processing notes:
- added conventional header with dataset name, PI name, version date
- modified parameter names to conform with BCO-DMO naming conventions
- nd (no data) was entered into all blank cells
- split collector and museum codes into separate columns


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Data Files

File
dataset1_specimen_log.csv
(Comma Separated Values (.csv), 15.90 KB)
MD5:6a919730b7fda6685762a311a6b83eaa
Primary data file for dataset ID 679301

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Parameters

Parameters for this dataset have not yet been identified

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Deployments

Krug_lab

Website
Platform
Cal State LA
Start Date
2011-09-01
End Date
2016-07-31
Description
Studies on ecology and evolution of marine animals, focusing on larval stages.


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Project Information

Quantifying larval behavior to reconcile genetic connectivity with biophysical model predictions (PLDvFST)

Coverage: Florida and Caribbean


Dispersal is a critical life-history trait linking ecological and evolutionary processes. Transport of planktonic larvae affects colonization success and population persistence for benthic animals, and influences genetic subdivision of populations, local adaptation, and speciation. However, recent studies question the long-held assumption that pelagic larval duration (PLD) determines how far larvae are advected. This has applied significance, as oceanographic models used to predict exchange among marine protected areas often use PLD as the key larval parameter. The investigators' data for Caribbean gastropods show genetic breaks that are not congruent with model predictions, and levels of structure that are inconsistent with larval lifespan, highlighting a need for new theory.

This research will integrate molecular and larval ecology to test the link between dispersal and larval duration in a phylogenetic framework, and determine whether Individual Based Models (IBMs) accurately predict exchange for Caribbean reef ecosystems. The PI will collect multi-locus genetic data and quantify larval behavior for 14 related, ecologically similar species of sea slugs with PLDs from 0-30 days. The PI predicts that larval behavior explains why some species are under- or over-dispersed relative to their PLD; this work will reveal key parameters needed for biophysical-coupling models to predict connectivity for coastal invertebrates. The proposal will address 3 inter-related objectives: (1) Are genetic connectivity estimates from mtDNA and nuclear markers congruent, and consistent with model predictions? Data for mitochondrial and nuclear loci will be used to test for selection on mtDNA, estimate rates of gene flow and times of divergence, and assess levels of connectivity within each species. Matrices of model-predicted exchange will be compared with genetic similarity matrices to test whether breaks in gene flow occur where predicted. (2) Are genetic connectivity and PLD correlated? More broadly, the PI will test the assumption that larval period determines dispersal, using comparative methods in a phylogenetic framework to correct for effects of relatedness among species. The PI will compare models of trait evolution with Bayesian Markov chain Monte Carlo (MCMC) methods to determine if gene flow is correlated or uncorrelated with PLD, using a molecular phylogeny and multi-locus genetic data. (3) Does larval behavior explain genetic structure in species with long PLD? At least two of the focal species selected for this study are under-dispersed, with genetically isolated demes despite a 30-day PLD. Conversely, at least one short-PLD species has no genetic structure over large regions of the Caribbean. The PI will build on past work quantifying larval behavior to ask if species-specific differences in larval swimming facilitate local retention, making species deviate from expected connectivity patterns. The PI will also test whether pre-competent larvae respond to habitat cues in a way that influences dispersal, as occurs in fish. This work will reconcile life-history theory, oceanographic models, and genetics by mechanistically explaining breaks in connectivity; the results will deepen our understanding of how larval behavior can determine the pace of divergence among populations.

 



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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