http://lod.bco-dmo.org/id/dataset/683723
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-03-03
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Net calcification rates of coral and calcified algae in pCO2 flume experiments in Moorea, French Polynesia from August to October of 2014 (OA_Coral_adapt project, MCR_LTER project)
2017-02-23
publication
2017-02-23
revision
BCO-DMO Linked Data URI
2017-02-23
creation
http://lod.bco-dmo.org/id/dataset/683723
Peter J. Edmunds
California State University Northridge
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Edmunds, P. J. (2017) Net calcification rates of coral and calcified algae in pCO2 flume experiments in Moorea, French Polynesia from August to October of 2014 (OA_Coral_adapt project, MCR_LTER project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2017-02-23 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/683723 [access date]
Net calcification rates of coral and calcified algae under pCO2 flume experiments Dataset Description: <p><strong>These data were utilized in the following&nbsp;publication:</strong></p>
<p>Comeau S., Carpenter R.C., Lantz C.A., Edmunds P.J. (2016) Parameterization of the response of calcification to temperature and pCO2 in the coral&nbsp;<em>Acropora&nbsp;pulchra</em>&nbsp;and the alga&nbsp;<em>Lithophyllum&nbsp;kotschyanum</em>. Coral Reefs.&nbsp;doi:&nbsp;<a href="http://doi.org/10.1007/s00338-016-1425-0" target="_blank">10.1007/s00338-016-1425-0</a></p> Methods and Sampling: <p>The data is from an&nbsp;experiment performed in Moorea from August-October 2014. Constructed communities of corals (<em>Pocillopora</em> spp., massive <em>Porites</em> spp., and <em>Acropora</em> spp.) and crustose coralline algae (<em>Porolithon onkodes</em>) were placed in one of four flumes at either ambient (~400 uatm) or elevated (~1200 uatm) pCO2 for 7 weeks. Net calcification rates at the community scale in the flumes were measured using the total alkalinity anomaly method (Chisholm &amp; Gattuso, 1991), which assumes that for every two moles of AT consumed, one mole of CaCO3 is produced. Net calcification (Gn) was determined at three levels of biological organization (whole community, reef pavement, corals and coralline algae) and four flow speeds (2, 4, 8, and 14 cm s-1).&nbsp;Coral and algal samples were acquired at the barrier reef of the north shore of Moorea at ~15–17 m depth (-17.47423,-149.84258). For more details on methodology used, see Comeau et. al. 2015.</p>
<p>Average chemistry in the flumes during the 7-week experiment please see <a href="http://dmoserv3.whoi.edu/data_docs/MCR_LTER/carbon_chemistry_table.pdf" target="_blank">Carbon Chemistry Table (PDF)</a>.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1415300 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1415300
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1415268 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1415268
completed
Peter J. Edmunds
California State University Northridge
818-677-2502
Department of Biology 18111 Nordhoff Street
Northridge
CA
91330-8303
USA
peter.edmunds@csun.edu
pointOfContact
asNeeded
Unknown
site
lat
lon
experiment_type
treatment
flow
flume
week
day_night
incubation_period
light
gn
gn_corals
Vectrino
Orion 3-stars, Thermo Scientific
Titrator: T50
theme
None, User defined
site
latitude
longitude
experiment type
treatment
time_elapsed
time of day
calcification
featureType
BCO-DMO Standard Parameters
Acoustic Doppler Velocimeter
pH Sensor
Titrator
instrument
BCO-DMO Standard Instruments
MCR_Edmunds
service
Deployment Activity
Moorea, French Polynesia
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity
http://mcr.lternet.edu
Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity
<p><em>Extracted from the NSF award abstract:</em></p>
<p>This project focuses on the most serious threat to marine ecosystems, Ocean Acidification (OA), and addresses the problem in the most diverse and beautiful ecosystem on the planet, coral reefs. The research utilizes Moorea, French Polynesia as a model system, and builds from the NSF investment in the Moorea Coral Reef Long Term Ecological Research Site (LTER) to exploit physical and biological monitoring of coral reefs as a context for a program of studies focused on the ways in which OA will affect corals, calcified algae, and coral reef ecosystems. The project builds on a four-year NSF award with research in five new directions: (1) experiments of year-long duration, (2) studies of coral reefs to 20-m depth, (3) experiments in which carbon dioxide will be administered to plots of coral reef underwater, (4) measurements of the capacity of coral reef organisms to change through evolutionary and induced responses to improve their resistance to OA, and (5) application of emerging theories to couple studies of individual organisms to studies of whole coral reefs. Broader impacts will accrue through a better understanding of the ways in which OA will affect coral reefs that are the poster child for demonstrating climate change effects in the marine environment, and which provide income, food, and coastal protection to millions of people living in coastal areas, including in the United States. </p>
<p>This project focuses on the effects of Ocean Acidification on tropical coral reefs and builds on a program of research results from an existing 4-year award, and closely interfaces with the technical, hardware, and information infrastructure provided through the Moorea Coral Reef (MCR) LTER. The MCR-LTER, provides an unparalleled opportunity to partner with a study of OA effects on a coral reef with a location that arguably is better instrumented and studied in more ecological detail than any other coral reef in the world. Therefore, the results can be both contextualized by a high degree of ecological and physical relevance, and readily integrated into emerging theory seeking to predict the structure and function of coral reefs in warmer and more acidic future oceans. The existing award has involved a program of study in Moorea that has focused mostly on short-term organismic and ecological responses of corals and calcified algae, experiments conducted in mesocosms and flumes, and measurements of reef-scale calcification. This new award involves three new technical advances: for the first time, experiments will be conducted of year-long duration in replicate outdoor flumes; CO2 treatments will be administered to fully intact reef ecosystems in situ using replicated underwater flumes; and replicated common garden cultivation techniques will be used to explore within-species genetic variation in the response to OA conditions. Together, these tools will be used to support research on corals and calcified algae in three thematic areas: (1) tests for long-term (1 year) effects of OA on growth, performance, and fitness, (2) tests for depth-dependent effects of OA on reef communities at 20-m depth where light regimes are attenuated compared to shallow water, and (3) tests for beneficial responses to OA through intrinsic, within-species genetic variability and phenotypic plasticity. Some of the key experiments in these thematic areas will be designed to exploit integral projection models (IPMs) to couple organism with community responses, and to support the use of the metabolic theory of ecology (MTE) to address scale-dependence of OA effects on coral reef organisms and the function of the communities they build.</p>
<p><strong>The following publications and data resulted from this project:</strong></p>
<p>Comeau S, Carpenter RC, Lantz CA, Edmunds PJ. (2016) Parameterization of the response of calcification to temperature and pCO2 in the coral Acropora pulchra and the alga Lithophyllum kotschyanum. Coral Reefs 2016. DOI <a href="http://doi.org/10.1007/s00338-016-1425-0" target="_blank">10.1007/s00338-016-1425-0</a>.<br />
<a href="https://www.bco-dmo.org/dataset/683723" target="_blank">calcification rates</a> (2014)<br />
<a href="https://www.bco-dmo.org/dataset/648442" target="_blank">calcification rates </a>(2010)</p>
<p>Comeau, S., Carpenter, R.C., Edmunds, P.J. (2016) Effects of pCO2 on photosynthesis and respiration of tropical scleractinian corals and calcified algae. ICES Journal of Marine Science doi:<a href="http://doi.org/10.1093/icesjms/fsv267" target="_blank">10.1093/icesjms/fsv267</a>.<br />
<a href="http://www.bco-dmo.org/dataset/645277">respiration and photosynthesis I</a><br />
<a href="http://www.bco-dmo.org/dataset/648416">respiration and photosynthesis II</a></p>
<p>Evensen, N.R. & Edmunds P. J. (2016) Interactive effects of ocean acidification and neighboring corals on the growth of Pocillopora verrucosa. Marine Biology, 163:148. doi: <a href="http://doi.org/10.1007/s00227-016-2921-z" target="_blank">10.1007/s00227-016-2921-z</a><br />
<a href="https://www.bco-dmo.org/dataset/683932" target="_blank">coral growth</a><br />
<a href="https://www.bco-dmo.org/dataset/684541" target="_blank">seawater chemistry</a><br />
<a href="https://www.bco-dmo.org/dataset/684528">coral colony interactions</a></p>
OA coral adaptation
largerWorkCitation
project
eng; USA
oceans
Moorea, French Polynesia
-149.826
-149.826
-17.4907
-17.4907
2014-08-01
2014-10-31
Moorea, French Polynesia
0
BCO-DMO catalogue of parameters from Net calcification rates of coral and calcified algae in pCO2 flume experiments in Moorea, French Polynesia from August to October of 2014 (OA_Coral_adapt project, MCR_LTER project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/683736.rdf
Name: site
Units: unitless
Description: <p>Location of flume; MCR is shorthand for Moorea Coral Reef Long-Term Ecological Research site</p>
http://lod.bco-dmo.org/id/dataset-parameter/683737.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude of flume; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/683738.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude of flume; west is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/683739.rdf
Name: experiment_type
Units: unitless
Description: <p>Experiment identifier (community/pavement/flow); see acquisition description for details</p>
http://lod.bco-dmo.org/id/dataset-parameter/683740.rdf
Name: treatment
Units: unitless
Description: <p>pCO2 treatment in each flume (Amb [ambient] ~400 uatm; OA [ocean acidification] ~1000 uatm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/683741.rdf
Name: flow
Units: centimeters per second
Description: <p>Flow speed in the flume</p>
http://lod.bco-dmo.org/id/dataset-parameter/683742.rdf
Name: flume
Units: unitless
Description: <p>Flume number</p>
http://lod.bco-dmo.org/id/dataset-parameter/683743.rdf
Name: week
Units: unitless
Description: <p>Week number of experiment (1-7)</p>
http://lod.bco-dmo.org/id/dataset-parameter/683744.rdf
Name: day_night
Units: unitless
Description: <p>Time sampled (Day/Night)</p>
http://lod.bco-dmo.org/id/dataset-parameter/683745.rdf
Name: incubation_period
Units: unitless
Description: <p>Time range of incubation (TAHT - Tahiti Time Zone)</p>
http://lod.bco-dmo.org/id/dataset-parameter/683746.rdf
Name: light
Units: tbd
Description: <p>Light level</p>
http://lod.bco-dmo.org/id/dataset-parameter/683747.rdf
Name: gn
Units: g CaCO3 m-2 d-1
Description: <p>Whole community net calcification for a given flume</p>
http://lod.bco-dmo.org/id/dataset-parameter/683748.rdf
Name: gn_corals
Units: g CaCO3 m-2 d-1
Description: <p>Coral and calcifying algae net calcification for a given flume</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
37156
https://datadocs.bco-dmo.org/file/933jo8vuY2QKml/calc_pCO2.csv
calc_pCO2.csv
Primary data file for dataset ID 683723
download
https://osprey.bco-dmo.org/dataset/683723/data/download
download
onLine
dataset
<p>The data is from an&nbsp;experiment performed in Moorea from August-October 2014. Constructed communities of corals (<em>Pocillopora</em> spp., massive <em>Porites</em> spp., and <em>Acropora</em> spp.) and crustose coralline algae (<em>Porolithon onkodes</em>) were placed in one of four flumes at either ambient (~400 uatm) or elevated (~1200 uatm) pCO2 for 7 weeks. Net calcification rates at the community scale in the flumes were measured using the total alkalinity anomaly method (Chisholm &amp; Gattuso, 1991), which assumes that for every two moles of AT consumed, one mole of CaCO3 is produced. Net calcification (Gn) was determined at three levels of biological organization (whole community, reef pavement, corals and coralline algae) and four flow speeds (2, 4, 8, and 14 cm s-1).&nbsp;Coral and algal samples were acquired at the barrier reef of the north shore of Moorea at ~15–17 m depth (-17.47423,-149.84258). For more details on methodology used, see Comeau et. al. 2015.</p>
<p>Average chemistry in the flumes during the 7-week experiment please see <a href="http://dmoserv3.whoi.edu/data_docs/MCR_LTER/carbon_chemistry_table.pdf" target="_blank">Carbon Chemistry Table (PDF)</a>.</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Data Manager Processing Notes:<br />
* added a conventional header with dataset name, PI name, version date<br />
* modified parameter names to conform with BCO-DMO naming conventions<br />
* blank values replaced with no data value 'nd'<br />
* All values were rounded to three decimal places if more than that.<br />
* latitude and longitude added for experiment location</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Vectrino
Vectrino
PI Supplied Instrument Name: Vectrino PI Supplied Instrument Description:Acoustic Doppler Velocimeter: Vectrino, NortekUSA Instrument Name: Acoustic Doppler Velocimeter Instrument Short Name:ADV Instrument Description: ADV is the acronym for acoustic doppler velocimeter. The ADV is a remote-sensing, three-dimensional velocity sensor. Its operation is based on the Doppler shift effect. The sensor can be deployed either as a moored instrument or attached to a still structure near the seabed.
Reference:
G. Voulgaris and J. H. Trowbridge, 1998. Evaluation of the Acoustic Doppler Velocimeter (ADV) for Turbulence Measurements. J. Atmos. Oceanic Technol., 15, 272–289. doi: http://dx.doi.org/10.1175/1520-0426(1998)0152.0.CO;2 Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/384/
Orion 3-stars, Thermo Scientific
Orion 3-stars, Thermo Scientific
PI Supplied Instrument Name: Orion 3-stars, Thermo Scientific PI Supplied Instrument Description:pH Sensor: Orion 3-stars, Thermo Scientific, USA, mounted with a combination pH probe (Orion Ross Ultra, Thermo Scientific, USA) Instrument Name: pH Sensor Instrument Short Name:pH Sensor Instrument Description: An instrument that measures the hydrogen ion activity in solutions.
The overall concentration of hydrogen ions is inversely related to its pH. The pH scale ranges from 0 to 14 and indicates whether acidic (more H+) or basic (less H+).
Titrator: T50
Titrator: T50
PI Supplied Instrument Name: Titrator: T50 PI Supplied Instrument Description:Automatic Titrator: T50, Mettler-Toledo, Switzerland Instrument Name: Titrator Instrument Short Name:Titrator Instrument Description: Titrators are instruments that incrementally add quantified aliquots of a reagent to a sample until the end-point of a chemical reaction is reached. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB12/
Deployment: MCR_Edmunds
MCR_Edmunds
Richard B Gump Research Station - Moorea LTER
Richard B Gump Research Station - Moorea LTER
island
MCR_Edmunds
Peter J. Edmunds
California State University Northridge
Richard B Gump Research Station - Moorea LTER
Richard B Gump Research Station - Moorea LTER
island