http://lod.bco-dmo.org/id/dataset/684426
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-03-17
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Species, sample date, location individual size and sample disposition of adult fish surveyed near Carmel and Monterey Bays, CA, 2013-2016 (Larval Dispersal in Kelp Rockfish project)
2017-08-15
publication
2017-08-15
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-01-27
publication
https://doi.org/10.26008/1912/bco-dmo.684426.2
Mark Carr
University of California-Santa Cruz
principalInvestigator
Christopher Edwards
principalInvestigator
Dr John Carlos Garza
University of California-Santa Cruz
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Carr, M., Edwards, C., Garza, J. C. (2021) Species, sample date, location individual size and sample disposition of adult fish surveyed near Carmel and Monterey Bays, CA, 2013-2016 (Larval Dispersal in Kelp Rockfish project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2017-08-15 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.684426.2 [access date]
adult fish lengths Dataset Description: Methods and Sampling: <p>Tissue is collected from adult fish for genetic samples. Tissue samples from fishes collected by fishing gear (rod and reel or set gear) are collected by clipping the third spine of the first dorsal fin on the vessel and released as quickly as possible to the ocean at the location of collection. Some rod and reel collections are made by SCUBA divers underwater; tissue is sampled by fin-clipping as at the surface and the fish is immediately released, or by spear-biopsy - the use of a pole spear with a biopsy needle. The total length of all sampled fish is estimated to the nearest whole centimeter. Additional data recorded include date and location of sampling (GPS lat and lon coordinates), species, fate (released or sacrificed), and release condition (poor, fair, good) of fish. Additional samples were collected from other research or recreational fishing programs.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1260693 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1260693
completed
Mark Carr
University of California-Santa Cruz
(831) 459-3958
Long Marine Laboratory University of California, Santa Cruz
Santa Cruz
CA
95060
USA
mhcarr@ucsc.edu
pointOfContact
Christopher Edwards
(831) 459-3734
UC Santa Cruz / OCEAN SCIENCES 1156 High Street
Santa Cruz
CA
95064
USA
cedwards@ucsc.edu
pointOfContact
Dr John Carlos Garza
University of California-Santa Cruz
831-420-3903
Southwest Fisheries Science Center 110 Shaffer Road
Santa Cruz
CA
95060
USA
carlos.garza@noaa.gov
pointOfContact
asNeeded
Dataset Version: 2
Unknown
date
gear
sample
species
length_mm
fate
condition
count_fish_captured
count_samples
lat_gps
lon_gps
comment1
comment2
year
month
day
subregion
date_delivered_to_NMFS
NMFS_id
theme
None, User defined
date
instrument
sample identification
species scientific name (binomial)
length
No BCO-DMO term
count
latitude
longitude
comments
year
month of year
day of month
site
featureType
BCO-DMO Standard Parameters
Fishing Rod
instrument
BCO-DMO Standard Instruments
Carr_1999
service
Deployment Activity
Monterey and Carmel nearshore
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Partnership for Interdisciplinary Studies of Coastal Oceans
http://www.piscoweb.org/
Partnership for Interdisciplinary Studies of Coastal Oceans
The Partnership for Interdisciplinary Studies of Coastal Oceans is a long-term ecosystem research and monitoring program established with the goals of:
understanding dynamics of the coastal ocean ecosystem along the U.S. west coast
sharing that knowledge so ocean managers and policy makers can make science based decisions regarding coastal and marine stewardship
producing a new generation of scientists trained in interdisciplinary collaborative approaches
Over the last 10 years, PISCO has successfully built a unique research program that combines complementary disciplines to answer critical environmental questions and inform management and policy. Activities are conducted at the latitudinal scale of the California Current Large Marine Ecosystem along the west coast of North America, but anchored around the dynamics of coastal, hardbottom habitats and the oceanography of the nearshore ocean – among the most productive and diverse components of this ecosystem. The program integrates studies of changes in the ocean environment through ecological monitoring and experiments. Scientists examine the causes and consequences of ecosystem changes over spatial scales that are the most relevant to marine species and management, but largely unstudied elsewhere.
Findings are linked to solutions through a growing portfolio of tools for policy and management decisions. The time from scientific discovery to policy change is greatly reduced by coordinated, efficient links between scientists and key decision makers.
Core elements of PISCO are:
Interdisciplinary ecosystem science
Data archiving and sharing
Outreach to public and decision-making user groups
Interdisciplinary training
Coordination of distributed research team
Established in 1999 with funding from The David and Lucile Packard Foundation, PISCO is led by scientists from core campuses Oregon State University (OSU); Stanford University’s Hopkins Marine Station; University of California, Santa Cruz (UCSC); and University of California, Santa Barbara (UCSB). Collaborators from other institutions also contribute to leadership and development of PISCO programs. As of 2005, core PISCO activities are funded by collaborative grants from The David and Lucile Packard Foundation and the Gordon and Betty Moore Foundation. Core support, along with additional funding from diverse public and private sources, make this unique partnership possible.
PISCO
largerWorkCitation
program
Integrative evaluation of larval dispersal and delivery in kelp rockfish using inter-generational genetic tagging, demography and oceanography
http://research.pbsci.ucsc.edu/eeb/rclab/kelp-rockfish-pbt-project/
Integrative evaluation of larval dispersal and delivery in kelp rockfish using inter-generational genetic tagging, demography and oceanography
<p><em>Description from NSF award abstract:</em><br />
The spatial structure and dynamics of coastal marine fish populations are strongly influenced by the transport and recruitment of larvae. However, the scale and patterns of larval dispersal are among the most difficult demographic parameters to quantify in marine systems, due to the inability to tag and track the movement of larvae. In particular, the extent of local retention of larvae versus regional dispersal to other locations and populations is currently a hotly debated topic in the field of marine ecology and has profound implications for the design and effectiveness of Marine Protected Areas (MPAs). The research will identify patterns of larval dispersal and use those patterns to test predictions of dispersal generated by state-of-the-art circulation models.</p>
<p>The PI team brings together ecologists, geneticists, statisticians, and oceanographers with expertise in population demography and field sampling, mark/recapture data from genetic tags, and empirical and model-based evaluation of oceanographic processes to answer the following questions:<br />
1. Do observed patterns of dispersal and connectivity of larval kelp rockfish correspond to patterns predicted by high spatial resolution regional ocean circulation models? Model predictions will be tested empirically using larval settlement samples. Parentage analysis will be used to verify the occurrence of larvae derived from genetically tagged source populations.<br />
2. Is there evidence for local retention of larval kelp rockfish within the study area? To test the hypothesis that local retention of juvenile kelp rockfish from source populations is greater than expected by existing larval transport models, the PIs will compare the proportion of recruits that are genetically identified to have been produced from within three focal sites with the proportion of larval production that was tagged in those sites.<br />
3. Is the relative recruitment of recently settled kelp rockfish to focal sites in the study region proportionate to the relative larval production of those focal sites? The PIs will compare the proportion of tagged recruits with the proportion of larval production generated from tagged adults at varying spatial scales. They will use goodness of fit models to compare expected and observed connectivity matrices under varying hypotheses of larval dispersal. Alternatively, if the relative contribution of focal sites to larval replenishment of themselves, one another, and more distant populations is disproportionate to their relative production, can this discrepancy be explained by oceanographic processes that could facilitate particular trajectories of larval dispersal?</p>
<p>To determine if differences in self recruitment and connectivity can be attributed to local oceanographic features, the PIs will examine spatial and temporal correlations between these features and the spatial distribution and timing of recruitment.</p>
<p><em>Related websites:</em><br />
<a href="http://piscoweb.org" target="_blank">http://piscoweb.org</a><br />
<a href="http://research.pbsci.ucsc.edu/eeb/rclab/kelp-rockfish-pbt-project/" target="_blank">http://research.pbsci.ucsc.edu/eeb/rclab/kelp-rockfish-pbt-project/</a> (broken link)<br />
<a href="http://rockfish.ucsc.edu/" target="_blank">http://rockfish.ucsc.edu/</a><br />
<a href="http://oceanmodeling.ucsc.edu" target="_blank">http://oceanmodeling.ucsc.edu</a></p>
Larval Dispersal in Kelp Rockfish
largerWorkCitation
project
eng; USA
biota
oceans
Monterey and Carmel nearshore
-122.05
-121.891
36.46
36.95
2013-07-25
2016-09-26
Monterey Bay and vicinity
0
BCO-DMO catalogue of parameters from Species, sample date, location individual size and sample disposition of adult fish surveyed near Carmel and Monterey Bays, CA, 2013-2016 (Larval Dispersal in Kelp Rockfish project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/684430.rdf
Name: date
Units: unitless
Description: <p>date sample was collected formatted as yyyy-mm-dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/684431.rdf
Name: gear
Units: unitless
Description: <p>gear type used for collection:<br />
SMURF=Standardized Monitoring Unit for the Recruitment of Fishes - deployed 2m below surface. (Ammann A.J. 2004);<br />
BINCKE=Benthic Ichthyofauna Net for Coral/Kelp Environments. (Anderson T.W. and M.H. Carr. 1998);<br />
BENTHIC SMURF=SMURF deployed on seafloor;<br />
unknown=sample with unknown collection method.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684432.rdf
Name: sample
Units: unitless
Description: <p>Sample ID number. (NA if no sample taken)</p>
http://lod.bco-dmo.org/id/dataset-parameter/684433.rdf
Name: species
Units: unitless
Description: <p>Code for fish species identification abbreviated as first letter of genus and first three letters of species names. See "species codes" worksheet for values and definitions.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684434.rdf
Name: length_mm
Units: millimeters (mm)
Description: <p>total length of the fish (nd if no length measured)</p>
http://lod.bco-dmo.org/id/dataset-parameter/684435.rdf
Name: fate
Units: unitless
Description: <p>whether the fish was released live or killed for sampling: released; sacrificed; unknown</p>
http://lod.bco-dmo.org/id/dataset-parameter/684436.rdf
Name: condition
Units: unitless
Description: <p>condition of fish released live: good; fair; poor; unknown</p>
http://lod.bco-dmo.org/id/dataset-parameter/684437.rdf
Name: count_fish_captured
Units: individual
Description: <p>number of individuals represented in this sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/684438.rdf
Name: count_samples
Units: sample
Description: <p>number of samples collected from this capture</p>
http://lod.bco-dmo.org/id/dataset-parameter/684439.rdf
Name: lat_gps
Units: decimal degrees in WGS84 coordinate system
Description: <p>latitude at which sample was collected; obtained from GPS unit</p>
http://lod.bco-dmo.org/id/dataset-parameter/684440.rdf
Name: lon_gps
Units: decimal degrees in WGS84 coordinate system
Description: <p>longitude at which sample was collected; obtained from GPS unit</p>
http://lod.bco-dmo.org/id/dataset-parameter/684441.rdf
Name: comment1
Units: unitless
Description: <p>comment</p>
http://lod.bco-dmo.org/id/dataset-parameter/684442.rdf
Name: comment2
Units: unitless
Description: <p>further comment</p>
http://lod.bco-dmo.org/id/dataset-parameter/838579.rdf
Name: year
Units: unitless
Description: <p>sampling year</p>
http://lod.bco-dmo.org/id/dataset-parameter/838580.rdf
Name: month
Units: unitless
Description: <p>sampling month</p>
http://lod.bco-dmo.org/id/dataset-parameter/838581.rdf
Name: day
Units: unitless
Description: <p>sampling day</p>
http://lod.bco-dmo.org/id/dataset-parameter/838582.rdf
Name: subregion
Units: unitless
Description: <p>subregion of sampling area</p>
http://lod.bco-dmo.org/id/dataset-parameter/838583.rdf
Name: date_delivered_to_NMFS
Units: unitless
Description: <p>date sample was delivered to NMFS</p>
http://lod.bco-dmo.org/id/dataset-parameter/838584.rdf
Name: NMFS_id
Units: unitless
Description: <p>sample identifier at NMFS; formatted as yyyy-mm-dd</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
346178
https://darchive.mblwhoilibrary.org/bitstream/1912/26623/1/dataset-684426_fish-lengths-adults__v2.tsv
download
https://doi.org/10.26008/1912/bco-dmo.684426.2
download
onLine
dataset
<p>Tissue is collected from adult fish for genetic samples. Tissue samples from fishes collected by fishing gear (rod and reel or set gear) are collected by clipping the third spine of the first dorsal fin on the vessel and released as quickly as possible to the ocean at the location of collection. Some rod and reel collections are made by SCUBA divers underwater; tissue is sampled by fin-clipping as at the surface and the fish is immediately released, or by spear-biopsy - the use of a pole spear with a biopsy needle. The total length of all sampled fish is estimated to the nearest whole centimeter. Additional data recorded include date and location of sampling (GPS lat and lon coordinates), species, fate (released or sacrificed), and release condition (poor, fair, good) of fish. Additional samples were collected from other research or recreational fishing programs.</p>
Specified by the Principal Investigator(s)
<p>Data are entered by hand and double checked for accuracy.&nbsp; Dataset is checked for valid entries and completeness.</p>
<p><strong>BCO-DMO Processing Notes:</strong><br />
- added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions<br />
- re-formatted date from m/d/yyyy to yyyy-mm-dd<br />
- blank values replaced with no data value 'nd'<br />
- changed lat/lon (0,0 - no location) to nd's<br />
- sorted records by date</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: Instrument Name: Fishing Rod Instrument Short Name:Fishing Rod Instrument Description: Used to catch fish. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/90/
Deployment: Carr_1999
Carr_1999
Long Marine Lab UCSC
Long Marine Lab UCSC
laboratory
Carr_1999
Mark Carr
University of California-Santa Cruz
Long Marine Lab UCSC
Long Marine Lab UCSC
laboratory