http://lod.bco-dmo.org/id/dataset/684484
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-03-17
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Survey of fish species, number and size from transects near Carmel and Monterey Bays, CA, 1999-2015 (Larval Dispersal in Kelp Rockfish project)
2017-03-17
publication
2017-03-17
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-01-27
publication
https://doi.org/10.26008/1912/bco-dmo.684484.1
Mark Carr
University of California-Santa Cruz
principalInvestigator
Christopher Edwards
principalInvestigator
Dr John Carlos Garza
University of California-Santa Cruz
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Carr, M., Edwards, C., Garza, J. C. (2021) Survey of fish species, number and size from transects near Carmel and Monterey Bays, CA, 1999-2015 (Larval Dispersal in Kelp Rockfish project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2017-03-17 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.684484.1 [access date]
Fish surveys, 1999-2015 Dataset Description: Methods and Sampling: <p>Sampling consists of visual surveys of the number and size of all non-cryptic fishes by SCUBA divers. Surveys are conducted at sites distributed throughout the study region (Carmel Bay and southern Monterey Bay). Each sample site is divided into four "zones" (by depth - 20m, 15m, 10m, 5m - or from offshore to inshore at sites with little depth variation) to assure that samples are distributed across the face of a reef from inshore to offshore. Where possible, fish are counted on 12 transects per site (defined as a fixed stretch of coastline, occupying approximately 500m). Each "transect" includes a 2m x 2m x 30m "bottom" transect and a "mid-water" transect.&nbsp;&nbsp; Sampling is conducted by a pair of divers surveying the bottom and mid-water transects simultaneously. Surveys are designed to measure year-to-year site-wide variability in population structure and density. Density and size-structure estimates derived from these surveys are multiplied by habitat area measurements to estimate species abundance and, using published size-fecundity relationships, generate estimates of larval production.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1260693 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1260693
completed
Mark Carr
University of California-Santa Cruz
(831) 459-3958
Long Marine Laboratory University of California, Santa Cruz
Santa Cruz
CA
95060
USA
mhcarr@ucsc.edu
pointOfContact
Christopher Edwards
(831) 459-3734
UC Santa Cruz / OCEAN SCIENCES 1156 High Street
Santa Cruz
CA
95064
USA
cedwards@ucsc.edu
pointOfContact
Dr John Carlos Garza
University of California-Santa Cruz
831-420-3903
Southwest Fisheries Science Center 110 Shaffer Road
Santa Cruz
CA
95060
USA
carlos.garza@noaa.gov
pointOfContact
asNeeded
Dataset Version: 1
Unknown
year
month
day
site
side
zone
level
transect
classcode
count
fish_tl
min_tl
max_tl
observer
depth
vis
surge
lat_WGS84
lon_WGS84
theme
None, User defined
year
month of year
day of month
site
site description
transect
taxon_code
count
length
length_min
length_max
person name
depth
visibility
wave_height
latitude
longitude
featureType
BCO-DMO Standard Parameters
Carr_1999
service
Deployment Activity
Monterey and Carmel nearshore
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Partnership for Interdisciplinary Studies of Coastal Oceans
http://www.piscoweb.org/
Partnership for Interdisciplinary Studies of Coastal Oceans
The Partnership for Interdisciplinary Studies of Coastal Oceans is a long-term ecosystem research and monitoring program established with the goals of:
understanding dynamics of the coastal ocean ecosystem along the U.S. west coast
sharing that knowledge so ocean managers and policy makers can make science based decisions regarding coastal and marine stewardship
producing a new generation of scientists trained in interdisciplinary collaborative approaches
Over the last 10 years, PISCO has successfully built a unique research program that combines complementary disciplines to answer critical environmental questions and inform management and policy. Activities are conducted at the latitudinal scale of the California Current Large Marine Ecosystem along the west coast of North America, but anchored around the dynamics of coastal, hardbottom habitats and the oceanography of the nearshore ocean – among the most productive and diverse components of this ecosystem. The program integrates studies of changes in the ocean environment through ecological monitoring and experiments. Scientists examine the causes and consequences of ecosystem changes over spatial scales that are the most relevant to marine species and management, but largely unstudied elsewhere.
Findings are linked to solutions through a growing portfolio of tools for policy and management decisions. The time from scientific discovery to policy change is greatly reduced by coordinated, efficient links between scientists and key decision makers.
Core elements of PISCO are:
Interdisciplinary ecosystem science
Data archiving and sharing
Outreach to public and decision-making user groups
Interdisciplinary training
Coordination of distributed research team
Established in 1999 with funding from The David and Lucile Packard Foundation, PISCO is led by scientists from core campuses Oregon State University (OSU); Stanford University’s Hopkins Marine Station; University of California, Santa Cruz (UCSC); and University of California, Santa Barbara (UCSB). Collaborators from other institutions also contribute to leadership and development of PISCO programs. As of 2005, core PISCO activities are funded by collaborative grants from The David and Lucile Packard Foundation and the Gordon and Betty Moore Foundation. Core support, along with additional funding from diverse public and private sources, make this unique partnership possible.
PISCO
largerWorkCitation
program
Integrative evaluation of larval dispersal and delivery in kelp rockfish using inter-generational genetic tagging, demography and oceanography
http://research.pbsci.ucsc.edu/eeb/rclab/kelp-rockfish-pbt-project/
Integrative evaluation of larval dispersal and delivery in kelp rockfish using inter-generational genetic tagging, demography and oceanography
<p><em>Description from NSF award abstract:</em><br />
The spatial structure and dynamics of coastal marine fish populations are strongly influenced by the transport and recruitment of larvae. However, the scale and patterns of larval dispersal are among the most difficult demographic parameters to quantify in marine systems, due to the inability to tag and track the movement of larvae. In particular, the extent of local retention of larvae versus regional dispersal to other locations and populations is currently a hotly debated topic in the field of marine ecology and has profound implications for the design and effectiveness of Marine Protected Areas (MPAs). The research will identify patterns of larval dispersal and use those patterns to test predictions of dispersal generated by state-of-the-art circulation models.</p>
<p>The PI team brings together ecologists, geneticists, statisticians, and oceanographers with expertise in population demography and field sampling, mark/recapture data from genetic tags, and empirical and model-based evaluation of oceanographic processes to answer the following questions:<br />
1. Do observed patterns of dispersal and connectivity of larval kelp rockfish correspond to patterns predicted by high spatial resolution regional ocean circulation models? Model predictions will be tested empirically using larval settlement samples. Parentage analysis will be used to verify the occurrence of larvae derived from genetically tagged source populations.<br />
2. Is there evidence for local retention of larval kelp rockfish within the study area? To test the hypothesis that local retention of juvenile kelp rockfish from source populations is greater than expected by existing larval transport models, the PIs will compare the proportion of recruits that are genetically identified to have been produced from within three focal sites with the proportion of larval production that was tagged in those sites.<br />
3. Is the relative recruitment of recently settled kelp rockfish to focal sites in the study region proportionate to the relative larval production of those focal sites? The PIs will compare the proportion of tagged recruits with the proportion of larval production generated from tagged adults at varying spatial scales. They will use goodness of fit models to compare expected and observed connectivity matrices under varying hypotheses of larval dispersal. Alternatively, if the relative contribution of focal sites to larval replenishment of themselves, one another, and more distant populations is disproportionate to their relative production, can this discrepancy be explained by oceanographic processes that could facilitate particular trajectories of larval dispersal?</p>
<p>To determine if differences in self recruitment and connectivity can be attributed to local oceanographic features, the PIs will examine spatial and temporal correlations between these features and the spatial distribution and timing of recruitment.</p>
<p><em>Related websites:</em><br />
<a href="http://piscoweb.org" target="_blank">http://piscoweb.org</a><br />
<a href="http://research.pbsci.ucsc.edu/eeb/rclab/kelp-rockfish-pbt-project/" target="_blank">http://research.pbsci.ucsc.edu/eeb/rclab/kelp-rockfish-pbt-project/</a> (broken link)<br />
<a href="http://rockfish.ucsc.edu/" target="_blank">http://rockfish.ucsc.edu/</a><br />
<a href="http://oceanmodeling.ucsc.edu" target="_blank">http://oceanmodeling.ucsc.edu</a></p>
Larval Dispersal in Kelp Rockfish
largerWorkCitation
project
eng; USA
biota
oceans
Monterey and Carmel nearshore
-121.9825
-121.8946
36.3977
36.6405
1999-09-07
2015-10-01
Monterey Bay and vicinity
0
BCO-DMO catalogue of parameters from Survey of fish species, number and size from transects near Carmel and Monterey Bays, CA, 1999-2015 (Larval Dispersal in Kelp Rockfish project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/684494.rdf
Name: year
Units: year
Description: <p>The year that the survey was done in local time; YYYY format</p>
http://lod.bco-dmo.org/id/dataset-parameter/684495.rdf
Name: month
Units: month as numeral
Description: <p>The month that the survey was done in local time; M or MM format.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684496.rdf
Name: day
Units: day of month
Description: <p>The day that the survey was done in local time; D or DD format</p>
http://lod.bco-dmo.org/id/dataset-parameter/684497.rdf
Name: site
Units: unitless
Description: <p>The unique site code where the survey was performed. (as defined in the site information table) This site code refers to a specific GPS location defined by a bounding box and is likely associated with a placename (i.e there may be multiple sitecodes at the 'Jalama Beach' placename).</p>
http://lod.bco-dmo.org/id/dataset-parameter/684498.rdf
Name: side
Units: unitless
Description: <p>A division of the site into two or three areas; referred to as sides. Sides may be East (E), West (W), South (S), North (N), or CEN (central)</p>
http://lod.bco-dmo.org/id/dataset-parameter/684499.rdf
Name: zone
Units: unitless
Description: <p>A division of the side into 2 or 4 categories representing onshore-offshore stratification or targeted bottom depths for transects. Zones may be INNER, INMID, OUTMID and OUTER.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684500.rdf
Name: level
Units: unitless
Description: <p>Letter code for the relative depth of the sample (BOT, MID, CAN)</p>
http://lod.bco-dmo.org/id/dataset-parameter/684501.rdf
Name: transect
Units: transect
Description: <p>A number representing one of the parallel transects through the site area along which are located the sampling segments.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684502.rdf
Name: classcode
Units: unitless
Description: <p>The unique taxonomic or functional classification code that is being counted; as defined in the PISCO classification table. Refers to a Genus and species. See 'species codes' dataset for definitions.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684503.rdf
Name: count
Units: individuals
Description: <p>The number of individuals of a given species of a given size; indicated by the class code.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684504.rdf
Name: fish_tl
Units: cm
Description: <p>The total length of an individual or group of individuals (of the same length) OR the average total length for a group of fish where a range in lengths is specified (rounded to the nearest cm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/684505.rdf
Name: min_tl
Units: cm
Description: <p>The minimum size of the sampled class; used only when a range of sizes was recorded for a group of individuals of a species.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684506.rdf
Name: max_tl
Units: cm
Description: <p>The maximum size of the sampled class; used only when a range of sizes was recorded for a group of individuals of a species.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684507.rdf
Name: observer
Units: unitless
Description: <p>The diver taking these samples.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684508.rdf
Name: depth
Units: m
Description: <p>Average depth of the transect estimated by the diver. Each level is measured.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684509.rdf
Name: vis
Units: m
Description: <p>The diver estimation of horizontal visibility on each transect. Measured by reeling in the tape and noting the distance at which the end of the tape can first be seen.</p>
http://lod.bco-dmo.org/id/dataset-parameter/684510.rdf
Name: surge
Units: unitless
Description: <p>diver estimation of magnitude of horizontal displacement on each transect; recorded at depth. (L)ow, (M)edium, (H)igh.</p>
http://lod.bco-dmo.org/id/dataset-parameter/712838.rdf
Name: lat_WGS84
Units: decimal degrees
Description: <p>latitude derived from WGS84 system; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/712839.rdf
Name: lon_WGS84
Units: decimal degrees
Description: <p>longitude derived from WGS84 system; east is positive</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
7158437
https://darchive.mblwhoilibrary.org/bitstream/1912/26628/1/dataset-684484_fish-surveys-1999-2015__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.684484.1
download
onLine
dataset
<p>Sampling consists of visual surveys of the number and size of all non-cryptic fishes by SCUBA divers. Surveys are conducted at sites distributed throughout the study region (Carmel Bay and southern Monterey Bay). Each sample site is divided into four "zones" (by depth - 20m, 15m, 10m, 5m - or from offshore to inshore at sites with little depth variation) to assure that samples are distributed across the face of a reef from inshore to offshore. Where possible, fish are counted on 12 transects per site (defined as a fixed stretch of coastline, occupying approximately 500m). Each "transect" includes a 2m x 2m x 30m "bottom" transect and a "mid-water" transect.&nbsp;&nbsp; Sampling is conducted by a pair of divers surveying the bottom and mid-water transects simultaneously. Surveys are designed to measure year-to-year site-wide variability in population structure and density. Density and size-structure estimates derived from these surveys are multiplied by habitat area measurements to estimate species abundance and, using published size-fecundity relationships, generate estimates of larval production.</p>
Specified by the Principal Investigator(s)
<p>Data are entered by hand and double checked for accuracy.&nbsp; Dataset is checked for valid entries and completeness.</p>
<p><strong>BCO-DMO Processing Notes:</strong><br />
- added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions<br />
- blank values replaced with no data value 'nd'<br />
- added latitude and longitude data from dataset "<a href="https://www.bco-dmo.org/dataset/661175" target="_blank">Site Code Key</a>"</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: Carr_1999
Carr_1999
Long Marine Lab UCSC
Long Marine Lab UCSC
laboratory
Carr_1999
Mark Carr
University of California-Santa Cruz
Long Marine Lab UCSC
Long Marine Lab UCSC
laboratory