http://lod.bco-dmo.org/id/dataset/685216
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-03-21
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
CTD profile data from ROV Doc Ricketts and Ventana dives conducted during the R/V Western Flyer MBARI DEEPC cruises off the California coast from 2016 to 2021
2022-01-27
publication
2022-01-27
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-01-13
publication
https://doi.org/10.26008/1912/bco-dmo.685216.3
Steven H. D. Haddock
Monterey Bay Aquarium Research Institute
principalInvestigator
Erik Thuesen
Evergreen State College
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Haddock, S. H. (2021) CTD profile data from ROV Doc Ricketts dives during R/V Western Flyer DEEPC cruises off the California coast from 2016 to 2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2019-10-08 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.685216.3 [access date]
CTD profiles collected during ROV dives Dataset Description: Methods and Sampling: <p>CTD files were collected with a Seabird CTD and other attached sensors mounted on the ROV Doc Ricketts during dives D856 to D861 offshore of California from the surface to 3600 meters.</p>
<p>Oxygen saturation quality flags:</p>
<p>0 Data known to be bad, sensor malfunctioned<br />
1 Questionable data contain some spikes but no known problems with the sensor.<br />
2 Auto-loaded data have been automatically loaded but not checked by human eyes<br />
3 Sensors appear to be operating as specified, checked by sensor technician, data looks reasonable<br />
4 Data are good, Scientist has verified the validity of the data</p>
Funding provided by NSF Division of Environmental Biology (NSF DEB) Award Number: DEB-1542679 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1542679
onGoing
Steven H. D. Haddock
Monterey Bay Aquarium Research Institute
831-775-1803
7700 Sandholdt Road
Moss Landing
CA
95039
USA
haddock@mbari.org
pointOfContact
Erik Thuesen
Evergreen State College
360-867-6584
Laboratory I 2700 Evergreen Parkway NW
Olympia
WA
98505
United States
thuesene@evergreen.edu
pointOfContact
asNeeded
Dataset Version: 4
Unknown
RovDive
ISO_DateTime_UTC
Depth
Latitude
Longitude
Temp
Salin
Oxygen
OxyQual
Transmiss
CTD with transmissometer and oxygen sensor
theme
None, User defined
dive_id
ISO_DateTime_UTC
depth
latitude
longitude
water temperature at measurement depth
salinity
dissolved Oxygen
quality flag
light_trans
featureType
BCO-DMO Standard Parameters
CTD Sea-Bird
instrument
BCO-DMO Standard Instruments
DEEPC_ROV_dives
MBARI_DEEPC_Cruises
service
Deployment Activity
Offshore California
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Dimensions: Collaborative Research: Life at extremes: Linking the phylogenetic and genomic diversity of ctenophores to ecophysiological adaptations in the deep sea
https://osprey.bco-dmo.org/project/654411
Dimensions: Collaborative Research: Life at extremes: Linking the phylogenetic and genomic diversity of ctenophores to ecophysiological adaptations in the deep sea
<p>The deep sea is more than 90 percent of the inhabitable space on Earth, yet life there is largely a mystery to science. Ctenophores, also known as comb jellies, are marine predators found in all oceans, inhabiting both deep and shallow seas. Although fragile and difficult to study, they are biologically important, in part because they appear to have been the first group of animals to split off from all other organisms during evolution, even before sponges and jellyfish. Over evolutionary time, many marine organisms have transitioned their home ranges to and from the deep sea despite the tremendous differences between these two habitats, including light, temperature, and hydrostatic pressure. Such habitat shifts required dramatic genetic and physiological changes to these animal lineages over time. The relationships between comb jelly species indicate that species from a variety of different families have evolved to live and thrive in the deep sea. This project will compare closely related deep and shallow species at biochemical, physiological and genetic levels to understand how these transitions came about. It will answer questions about the fundamental mechanisms of animal evolution and develop publicly available tools for analyzing genomic data sets. It will result in the training of cutting-edge techniques for two PhD students, a postdoc, two masters students, and numerous undergraduates. Public outreach involving biodiversity in the deep sea and gelatinous animals will help educate and inspire appreciation of marine life.</p>
<p>The main objective of this project is to understand evolution and diversification using cutting edge molecular analyses to investigate the deep-sea habitat as the generating force of novel biological adaptations. Ctenophore specimens will be collected using blue-water SCUBA in surface waters and remotely operated submarines in the deep sea to generate complementary physiological and genomic data across the full phylogenetic and functional diversity of ctenophores. With samples taken across a range of habitats from shallow tropical waters to temperate bathypelagic zone, the team will measure physiological capabilities and sequence transcriptomes and genomes. This project will develop novel algorithms to identify genes involved in depth adaptation and examine the genetic events that underlie physiological tolerances and adaptations to high hydrostatic pressures in the deep sea. To confirm the theory-based predictions of how gene sequence affects the properties of enzymes, proteins will be expressed and characterized in the lab. Collaborations between the students, postdocs and PIs involved in this project will substantially enhance an interdisciplinary workforce trained in both classical and cutting edge skills needed for contemporary biodiversity investigations.</p>
DEEPC
largerWorkCitation
project
eng; USA
oceans
Offshore California
-125.045
-119.428
33.8358
36.8024
2016-06-11
2021-10-30
Monterey Bay, Puget Sound, Florida, Global Ocean
0
BCO-DMO catalogue of parameters from CTD profile data from ROV Doc Ricketts and Ventana dives conducted during the R/V Western Flyer MBARI DEEPC cruises off the California coast from 2016 to 2021
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/778766.rdf
Name: RovDive
Units: unitless
Description: <p>Dive identifier. Incrementing MBARI dive number for the vehicle. Dives with prefix "D" were ROV Doc Ricketts dives and the "V" prefix were ROV Ventana dives.</p>
http://lod.bco-dmo.org/id/dataset-parameter/778767.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>IDate and time (UTC) in ISO 8601:2004(E) format YYYY-mm-ddTHH:MM:SSZ</p>
http://lod.bco-dmo.org/id/dataset-parameter/778768.rdf
Name: Depth
Units: meters
Description: <p>Depth of sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/778769.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Approximate latitude of dive</p>
http://lod.bco-dmo.org/id/dataset-parameter/778770.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Approximate longitude of dive; west is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/778771.rdf
Name: Temp
Units: degrees Celsius
Description: <p>Temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/778772.rdf
Name: Salin
Units: parts per thousand (ppt)
Description: <p>Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/778773.rdf
Name: Oxygen
Units: milliliters per liter (ml/L)
Description: <p>Oxygen saturation</p>
http://lod.bco-dmo.org/id/dataset-parameter/778774.rdf
Name: OxyQual
Units: unitless
Description: <p>Oxygen saturation quality flag (0-3; 3 is checked by chemist)</p>
http://lod.bco-dmo.org/id/dataset-parameter/778775.rdf
Name: Transmiss
Units: percent
Description: <p>Light transmission at 660 nm</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
113912435
https://darchive.mblwhoilibrary.org/bitstream/1912/26569/1/dataset-685216_rov-ctd-profiles__v3.tsv
download
https://doi.org/10.26008/1912/bco-dmo.685216.3
download
onLine
dataset
<p>CTD files were collected with a Seabird CTD and other attached sensors mounted on the ROV Doc Ricketts during dives D856 to D861 offshore of California from the surface to 3600 meters.</p>
<p>Oxygen saturation quality flags:</p>
<p>0 Data known to be bad, sensor malfunctioned<br />
1 Questionable data contain some spikes but no known problems with the sensor.<br />
2 Auto-loaded data have been automatically loaded but not checked by human eyes<br />
3 Sensors appear to be operating as specified, checked by sensor technician, data looks reasonable<br />
4 Data are good, Scientist has verified the validity of the data</p>
from Deployment: DEEPC_ROV_dives <p>ROV Doc Ricketts Dives D856 to D861</p>
Specified by the Principal Investigator(s)
<p>Retrieved from MBARI database and formatted into columns.</p>
<p><strong>BCO-DMO Data Manager Processing Notes:</strong></p>
<p>* added a conventional header with dataset name, PI name, version date<br />
* modified parameter names to conform with BCO-DMO naming conventions<br />
* changed "None" to "nd" for no data value<br />
* converted date and time to ISO timestamp<br />
* approximate lat lons added from ctenophore observations for all but cruise D856</p>
<p>Data version 2 (2017-10-17) replaced version 1 (2016-12-22):<br />
* more dive data added<br />
* Some variable names changed. Parameter descriptions updated to reflect this.<br />
* lat_approx, lon_approx extracted from the ctenophore dataset removed<br />
* Latitude and Longitude added (from new version of ctd files).<br />
<br />
Data version 3 (2019-10-08):<br />
* Data from 2017 to 2019 added to data from data version 2 which was 2016 data.<br />
* Data sorted by time<br />
* Latitude and longitude rounded to 5 decimal places.<br />
<br />
Data version 4 (2022-01-27):<br />
* Data from 2020-2021&nbsp;added<br />
* Data sorted by time<br />
* Latitude and longitude rounded to 5 decimal places.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
CTD with transmissometer and oxygen sensor
CTD with transmissometer and oxygen sensor
PI Supplied Instrument Name: CTD with transmissometer and oxygen sensor PI Supplied Instrument Description:CTD files were collected with a Seabird CTD and other attached sensors mounted on the ROV Instrument Name: CTD Sea-Bird Instrument Short Name:CTD Sea-Bird Instrument Description: A Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics. This instrument designation is used when specific make and model are not known or when a more specific term is not available in the BCO-DMO vocabulary. Refer to the dataset-specific metadata for more information about the specific CTD used. More information from: http://www.seabird.com/ Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/130/
Deployment: DEEPC_ROV_dives
DEEPC_ROV_dives
Doc Ricketts
International Council for the Exploration of the Sea
Doc Ricketts
ROV
DEEPC_ROV_dives
Steven H. D. Haddock
Monterey Bay Aquarium Research Institute
Cruise: MBARI_DEEPC_Cruises
MBARI_DEEPC_Cruises
R/V Western Flyer
International Council for the Exploration of the Sea
R/V Western Flyer
vessel
Doc Ricketts
International Council for the Exploration of the Sea
Doc Ricketts
ROV
R/V Western Flyer
International Council for the Exploration of the Sea
R/V Western Flyer
vessel