http://lod.bco-dmo.org/id/dataset/685287
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-03-21
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Ctenophore observations from ROV Doc Ricketts and Ventana dives conducted during the R/V Western Flyer MBARI DEEPC cruises off the California coast from 2016 to 2021
2022-01-27
publication
2022-01-27
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-01-12
publication
https://doi.org/10.26008/1912/bco-dmo.685287.2
Steven H. D. Haddock
Monterey Bay Aquarium Research Institute
principalInvestigator
Erik Thuesen
Evergreen State College
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Haddock, S. H. (2021) Ctenophore observations from ROV Doc Ricketts dives during the R/V Western Flyer DEEPC cruises offshore of California, 2016-2020 (DEEPC project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2020-12-14 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.685287.2 [access date]
Ctenophore observations collected during ROV dives Dataset Description: Methods and Sampling: <p>Ctenophore observations were recorded during ROV Doc Ricketts during dives D856 to D920 (2016), D959 to D965 (2017)&nbsp;and 1240 to 1245 (2019 and 2020). Ctenophores&nbsp;collected with the ROV Ventana were from dives 4213 to 4275 (2019 and 2020) in Monterey Bay offshore of&nbsp;California from 200 to 4000 meters.<br />
<br />
The data include the species or lowest classification possible along with the date, time, depth, and temperature where the organism was observed.&nbsp; The timestamp &nbsp;(TapeTimeCode)&nbsp; on the recorded tape is also provided when available. The data include measurements taken by the ROV on the way down and up.</p>
Funding provided by NSF Division of Environmental Biology (NSF DEB) Award Number: DEB-1542679 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1542679
onGoing
Steven H. D. Haddock
Monterey Bay Aquarium Research Institute
831-775-1803
7700 Sandholdt Road
Moss Landing
CA
95039
USA
haddock@mbari.org
pointOfContact
Erik Thuesen
Evergreen State College
360-867-6584
Laboratory I 2700 Evergreen Parkway NW
Olympia
WA
98505
United States
thuesene@evergreen.edu
pointOfContact
asNeeded
Dataset Version: 3
Unknown
DiveNumber
Latitude
Longitude
Depth
Temperature
Date
DateTime24
ISO_DateTime_UTC
ConceptName
TapeTimeCode
SampleRefName
RovName
video recorder
CTD with transmissometer and oxygen sensor
theme
None, User defined
dive_id
latitude
longitude
depth
temperature of sample or a generic measurement (not in-situ water temp)
date
time of day
ISO_DateTime_UTC
sample description
instrument
featureType
BCO-DMO Standard Parameters
Camera
CTD Sea-Bird
ROV Ventana
instrument
BCO-DMO Standard Instruments
DEEPC_ROV_dives
MBARI_DEEPC_Cruises
service
Deployment Activity
Offshore California
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Dimensions: Collaborative Research: Life at extremes: Linking the phylogenetic and genomic diversity of ctenophores to ecophysiological adaptations in the deep sea
https://osprey.bco-dmo.org/project/654411
Dimensions: Collaborative Research: Life at extremes: Linking the phylogenetic and genomic diversity of ctenophores to ecophysiological adaptations in the deep sea
<p>The deep sea is more than 90 percent of the inhabitable space on Earth, yet life there is largely a mystery to science. Ctenophores, also known as comb jellies, are marine predators found in all oceans, inhabiting both deep and shallow seas. Although fragile and difficult to study, they are biologically important, in part because they appear to have been the first group of animals to split off from all other organisms during evolution, even before sponges and jellyfish. Over evolutionary time, many marine organisms have transitioned their home ranges to and from the deep sea despite the tremendous differences between these two habitats, including light, temperature, and hydrostatic pressure. Such habitat shifts required dramatic genetic and physiological changes to these animal lineages over time. The relationships between comb jelly species indicate that species from a variety of different families have evolved to live and thrive in the deep sea. This project will compare closely related deep and shallow species at biochemical, physiological and genetic levels to understand how these transitions came about. It will answer questions about the fundamental mechanisms of animal evolution and develop publicly available tools for analyzing genomic data sets. It will result in the training of cutting-edge techniques for two PhD students, a postdoc, two masters students, and numerous undergraduates. Public outreach involving biodiversity in the deep sea and gelatinous animals will help educate and inspire appreciation of marine life.</p>
<p>The main objective of this project is to understand evolution and diversification using cutting edge molecular analyses to investigate the deep-sea habitat as the generating force of novel biological adaptations. Ctenophore specimens will be collected using blue-water SCUBA in surface waters and remotely operated submarines in the deep sea to generate complementary physiological and genomic data across the full phylogenetic and functional diversity of ctenophores. With samples taken across a range of habitats from shallow tropical waters to temperate bathypelagic zone, the team will measure physiological capabilities and sequence transcriptomes and genomes. This project will develop novel algorithms to identify genes involved in depth adaptation and examine the genetic events that underlie physiological tolerances and adaptations to high hydrostatic pressures in the deep sea. To confirm the theory-based predictions of how gene sequence affects the properties of enzymes, proteins will be expressed and characterized in the lab. Collaborations between the students, postdocs and PIs involved in this project will substantially enhance an interdisciplinary workforce trained in both classical and cutting edge skills needed for contemporary biodiversity investigations.</p>
DEEPC
largerWorkCitation
project
eng; USA
biota
oceans
Offshore California
-123.99958
-117.717408
32.724904
36.80105
2016-06-11
2021-10-30
Monterey Bay, Puget Sound, Florida, Global Ocean
0
BCO-DMO catalogue of parameters from Ctenophore observations from ROV Doc Ricketts and Ventana dives conducted during the R/V Western Flyer MBARI DEEPC cruises off the California coast from 2016 to 2021
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/685343.rdf
Name: DiveNumber
Units: unitless
Description: <p>Dive identifier. Incrementing MBARI dive number for the vehicle. Dives with prefix "D" were ROV Doc Ricketts dives and the "V" prefix were ROV Ventana dives.</p>
http://lod.bco-dmo.org/id/dataset-parameter/685344.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude of observation</p>
http://lod.bco-dmo.org/id/dataset-parameter/685345.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude of observation; west is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/685346.rdf
Name: Depth
Units: meters
Description: <p>Depth of observation</p>
http://lod.bco-dmo.org/id/dataset-parameter/685347.rdf
Name: Temperature
Units: degrees Celsius
Description: <p>Temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/685348.rdf
Name: Date
Units: unitless
Description: <p>Date of observation (UTC) in format yyyy-mm-dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/685349.rdf
Name: DateTime24
Units: unitless
Description: <p>Timestamp of observation (UTC) in either format "yyyy-mm-dd HH:MM" or "yyyy-mm-dd HH:MM:SS"</p>
http://lod.bco-dmo.org/id/dataset-parameter/685350.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>ISO timestamp based on the ISO 8601:2004(E) standard in format YYYY-mm-ddTHH:MMZ (UTC)</p>
http://lod.bco-dmo.org/id/dataset-parameter/685351.rdf
Name: ConceptName
Units: unitless
Description: <p>Species or lowest classification for organism</p>
http://lod.bco-dmo.org/id/dataset-parameter/685352.rdf
Name: TapeTimeCode
Units: unitless
Description: <p>Time code on recording of dive</p>
http://lod.bco-dmo.org/id/dataset-parameter/685354.rdf
Name: SampleRefName
Units: unitless
Description: <p>Dive-Sampler number</p>
http://lod.bco-dmo.org/id/dataset-parameter/834149.rdf
Name: RovName
Units: unitless
Description: <p>ROV name</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
25436
https://darchive.mblwhoilibrary.org/bitstream/1912/26558/1/dataset-685287_ctenophore-sample-log__v2.tsv
download
https://doi.org/10.26008/1912/bco-dmo.685287.2
download
onLine
dataset
<p>Ctenophore observations were recorded during ROV Doc Ricketts during dives D856 to D920 (2016), D959 to D965 (2017)&nbsp;and 1240 to 1245 (2019 and 2020). Ctenophores&nbsp;collected with the ROV Ventana were from dives 4213 to 4275 (2019 and 2020) in Monterey Bay offshore of&nbsp;California from 200 to 4000 meters.<br />
<br />
The data include the species or lowest classification possible along with the date, time, depth, and temperature where the organism was observed.&nbsp; The timestamp &nbsp;(TapeTimeCode)&nbsp; on the recorded tape is also provided when available. The data include measurements taken by the ROV on the way down and up.</p>
from Deployment: DEEPC_ROV_dives <p>ROV Doc Ricketts Dives D856 to D861</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Data Manager Processing Notes:</strong></p>
<p>Data version 2016-12-22<br />
* added a conventional header with dataset name, PI name, version date<br />
* modified parameter names to conform with BCO-DMO naming conventions<br />
* converted date and time to ISO timestamp<br />
* rounded temperature and depth to two decimal places and lat/lon to five.</p>
<p>Data version 2017-10-17 replaces version 2016-12-22<br />
* more data added from newer dives<br />
* data parameter names changed, parameter section updated<br />
* "D" added before dive number to be consistent&nbsp;with CTD dataset.<br />
* observer parameter description removed as it was not included in this version of files.</p>
<p>Data version 2: 2020-12-14 replaces&nbsp;version 1:2017-10-17<br />
* added data from 2019 and 2020 dives<br />
* added D or V to DiveNumber for "Doc Ricketts" and "Ventana", respectively, to agree with CTD dataset.</p>
<p>Data version 3: 2021-01-27 replaces version 2: 2020-12-14<br />
* added data from 2020 and 2021 dives<br />
* added D or V to DiveNumber for "Doc Ricketts" and "Ventana", respectively, to agree with CTD dataset.<br />
* Preserved format in column "DateTime24" which has a variable format ( yyyy-mm-dd HH:MM:SS or HH:MM).&nbsp;Filled in existing column from v1 and v2&nbsp;"ISO_DateTime_UTC"&nbsp;with a consistent ISO 8601 format with time zone (yyyy-mm-ddTHH:MMZ).&nbsp;<br />
* Lat lon rounded to five decimal places as was done in version 1.&nbsp;<br />
* Made a unique taxa list using the "ConceptName" data column and matched names using the World Register of Marine Species taxa match tool.&nbsp; This will be attached as a supplemental file to this dataset and will include the matched taxonomic identifiers&nbsp;aphiaID, and LSID.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
video recorder
video recorder
PI Supplied Instrument Name: video recorder Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/
CTD with transmissometer and oxygen sensor
CTD with transmissometer and oxygen sensor
PI Supplied Instrument Name: CTD with transmissometer and oxygen sensor PI Supplied Instrument Description:CTD files were collected with a Seabird CTD and other attached sensors mounted on the ROV Instrument Name: CTD Sea-Bird Instrument Short Name:CTD Sea-Bird Instrument Description: A Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics. This instrument designation is used when specific make and model are not known or when a more specific term is not available in the BCO-DMO vocabulary. Refer to the dataset-specific metadata for more information about the specific CTD used. More information from: http://www.seabird.com/ Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/130/
PI Supplied Instrument Name: Instrument Name: ROV Ventana Instrument Short Name: Instrument Description: ROV Ventana is operated by the Monterey Bay Aquarium Research Institute (MBARI). ROV Ventana comes with two manipulators as standard equipment: a Schilling T4, seven-function spatially correspondent arm, and a seven-function Schilling/Oceaneering Atlas Hybrid (rate and spacially correspondent.) Both manipulators can use a variety of end effectors. The ROV has forward-looking camera systems mounted on pan-and-tilt units. The vehicle also has a hydraulic swing arm that deploys from the port side.
Ventana is equipped with a Sea-Bird 19plus V2 CTD package which includes a dissolved oxygen sensor and a transmissometer. Three spatial lasers are mounted on the main camera for quantitative calculations.
For a full description, see https://www.mbari.org/at-sea/vehicles/remotely-operated-vehicles/rov-ventana/.
Deployment: DEEPC_ROV_dives
DEEPC_ROV_dives
Doc Ricketts
International Council for the Exploration of the Sea
Doc Ricketts
ROV
DEEPC_ROV_dives
Steven H. D. Haddock
Monterey Bay Aquarium Research Institute
Cruise: MBARI_DEEPC_Cruises
MBARI_DEEPC_Cruises
R/V Western Flyer
International Council for the Exploration of the Sea
R/V Western Flyer
vessel
Doc Ricketts
International Council for the Exploration of the Sea
Doc Ricketts
ROV
R/V Western Flyer
International Council for the Exploration of the Sea
R/V Western Flyer
vessel