http://lod.bco-dmo.org/id/dataset/685756
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-03-23
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Niskin bottle sample data from R/V New Horizon NEMO cruise NH1417 in the Eastern Pacific between San Diego and Hawaii from August to September 2014 (Phyto response to N substrates project)
2018-03-09
publication
2018-03-09
revision
BCO-DMO Linked Data URI
2018-03-09
creation
http://lod.bco-dmo.org/id/dataset/685756
Matthew M. Mills
Stanford University
principalInvestigator
Kevin R. Arrigo
Stanford University
principalInvestigator
Matthew J. Church
University of Montana
principalInvestigator
Dr Zbigniew Kolber
Soliense Inc.
principalInvestigator
Jonathan P. Zehr
University of California-Santa Cruz
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Mills, M. M., Zehr, J. P., Church, M. J., Arrigo, K. R., Kolber, Z. (2018) Niskin bottle sample data from R/V New Horizon NEMO cruise NH1417 in the Eastern Pacific between San Diego and Hawaii from August to September 2014 (Phyto response to N substrates project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2018-03-09 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/685756 [access date]
Niskin bottle data Dataset Description: <p>This dataset contains measurements from Niskin bottle samples from R/V New Horizon&nbsp;cruise NH1417 from August 18th to September&nbsp;16th of 2014 in the Eastern Pacific between San Diego and Hawaii.&nbsp;The R/V New Horizon cruise NH1417 was a Nutrient Effects on Marine microOrganisms (NEMO) cruise. &nbsp;</p>
<p><strong>Measurements from Fast Repetition Rate </strong><strong>Fluorometry</strong><strong> (FRRF):</strong> initial fluorescence, maximum photochemical efficiency of photostream II, and functional absorption of cross-section.</p>
<p><strong>CTD measurements:</strong> temperature, salinity, pressure, PAR, in-situ chlorophyll a, dissolved oxygen, fluorescence.</p>
<p><strong>Derived values:&nbsp;</strong>Extracted chlorophyll a, 15N2 enrichment, 14C primary production.</p> Methods and Sampling: <p>Samples were collected using standard oceanographic techniques. A CTD Rosette with 24 10L Niskin bottles was lowered to the maximum sampling depth and then brought back to the surface. Water was collected during upcasts at discrete depths. Once on board seawater was collected from each bottle for analysis. CTD data included are also from the upcasts.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1241221 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1241221
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1241263 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1241263
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1241093 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1241093
onGoing
Matthew M. Mills
Stanford University
605-736-0688
Geophysics, Mitchell Bldg 397 Panama Mall, Room 324
Stanford
CA
94305-2215
USA
mmmills@stanford.edu
pointOfContact
Kevin R. Arrigo
Stanford University
650-723-3599
Department of Earth System Science/ Y2E2 Building Room 141
Stanford
CA
94305
USA
arrigo@stanford.edu
pointOfContact
Matthew J. Church
University of Montana
(406) 982-3301
Flathead Lake Biological Station, University of Montana 321225 Bio Station Lane
Polson
MT
59860-6815
USA
matt.church@flbs.umt.edu
pointOfContact
Dr Zbigniew Kolber
Soliense Inc.
zkolber@gmail.com
pointOfContact
Jonathan P. Zehr
University of California-Santa Cruz
831-459 4009
E&MS A438, Ocean Sciences Department 1156 High Street
Santa Cruz
CA
95064
USA
zehrj@ucsc.edu
pointOfContact
asNeeded
Unknown
EXPOCODE
SECT_ID
STNNBR
CASTNO
BTLNBR
BTLNBR_FLAG_W
DATE
TIME
LATITUDE
LONGITUDE
DEPTH
CTDPRS
CTDTMP_UP
CTDTMP_UP_FLAG_W
CTDTMP1_UP
CTDTMP1_UP_FLAG_W
CTDSAL_UP
CTDSAL_UP_FLAG_W
CTDSAL2_UP
CTDSAL2_UP_FLAG_W
CTDOXY_UP
CTDOXY_UP_FLAG_W
CTDFLUOR_UP
CTDFLUOR_UP_FLAG_W
CTDTRANS_UP
CTDTRANS_UP_FLAG_W
CTDPAR_UP
CTDPAR_UP_FLAG_W
CTDSPAR_UP
CTDSPAR_UP_FLAG_W
Chlorophyll_a
Chlorophyll_a_FLAG_W
Chlorophyll_a_STDEV
Chlorophyll_a_STDEV_FLAG_W
POC
POC_FLAG_W
PON
PON_FLAG_W
NITRAT
NITRAT_FLAG_W
NITRAT_STDEV
NITRAT_STDEV_FLAG_W
PHSPHT
PHSPHT_FLAG_W
PHSPHT_STDEV
PHSPHT_STDEV_FLAG_W
N2_FIXATION
N2_FIXATION_FLAG_W
N2_FIXATION_STDEV
N2_FIXATION_STDEV_FLAG_W
FRRF_Fo_Color1
FRRF_Fo_Color1_FLAG_W
FRRF_Fo_Color1_STDEV
FRRF_Fo_Color1_STDEV_FLAG_W
FRRF_FvFm_Color1
FRRF_FvFm_Color1_FLAG_W
FRRF_FvFm_Color1_STDEV
FRRF_FvFm_Color1_STDEV_FLAG_W
FRRF_Sig_Color1
FRRF_Sig_Color1_FLAG_W
FRRF_Sig_Color1_STDEV
FRRF_Sig_Color1_STDEV_FLAG_W
FRRF_Fo_Color2
FRRF_Fo_Color2_FLAG_W
FRRF_Fo_Color2_STDEV
FRRF_Fo_Color2_STDEV_FLAG_W
FRRF_FvFm_Color2
FRRF_FvFm_Color2_FLAG_W
FRRF_FvFm_Color2_STDEV
FRRF_FvFm_Color2_STDEV_FLAG_W
FRRF_Sig_Color2
FRRF_Sig_Color2_FLAG_W
FRRF_Sig_Color2_STDEV
FRRF_Sig_Color2_STDEV_FLAG_W
FRRF_Fo_Color3
FRRF_Fo_Color3_FLAG_W
FRRF_Fo_Color3_STDEV
FRRF_Fo_Color3_STDEV_FLAG_W
FRRF_FvFm_Color3
FRRF_FvFm_Color3_FLAG_W
FRRF_FvFm_Color3_STDEV
FRRF_FvFm_Color3_STDEV_FLAG_W
FRRF_Sig_Color3
FRRF_Sig_Color3_FLAG_W
FRRF_Sig_Color3_STDEV
FRRF_Sig_Color3_STDEV_FLAG_W
FRRF_Fo_Color4
FRRF_Fo_Color4_FLAG_W
FRRF_Fo_Color4_STDEV
FRRF_Fo_Color4_STDEV_FLAG_W
FRRF_FvFm_Color4
FRRF_FvFm_Color4_FLAG_W
FRRF_FvFm_Color4_STDEV
FRRF_FvFm_Color4_STDEV_FLAG_W
FRRF_Sig_Color4
FRRF_Sig_Color4_FLAG_W
FRRF_Sig_Color4_STDEV
FRRF_Sig_Color4_STDEV_FLAG_W
PRIPROD
PRIPROD_FLAG_W
PRIPROD_STDEV
PRIPROD_STDEV_FLAG
SAMPNO
ISO_DateTime_UTC
CTD Rosette
theme
None, User defined
EXPOCODE
cruise name
station
cast
bottle
flag
date
time of day
latitude
longitude
depth
water pressure
water temperature at measurement depth
quality flag
salinity
dissolved Oxygen
fluorescence
transmission
PAR
SPAR
chlorophyll a
standard deviation
particulate organic Carbon (POC)
particulate organic nitrogen
Nitrate
reactive phosphorus (PO4)
Nitrogen
Fv to Fm ratio
No BCO-DMO term
primary production
sample identification
ISO_DateTime_UTC
featureType
BCO-DMO Standard Parameters
CTD - profiler
Niskin bottle
instrument
BCO-DMO Standard Instruments
NH1417
service
Deployment Activity
Eastern Pacific between San Diego and Hawaii
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Dimensions of Biodiversity
http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503446
Dimensions of Biodiversity
(adapted from the NSF Synopsis of Program)
Dimensions of Biodiversity is a program solicitation from the NSF Directorate for Biological Sciences. FY 2010 was year one of the program. [MORE from NSF]
The NSF Dimensions of Biodiversity program seeks to characterize biodiversity on Earth by using integrative, innovative approaches to fill rapidly the most substantial gaps in our understanding. The program will take a broad view of biodiversity, and in its initial phase will focus on the integration of genetic, taxonomic, and functional dimensions of biodiversity. Project investigators are encouraged to integrate these three dimensions to understand the interactions and feedbacks among them. While this focus complements several core NSF programs, it differs by requiring that multiple dimensions of biodiversity be addressed simultaneously, to understand the roles of biodiversity in critical ecological and evolutionary processes.
Dimensions of Biodiversity
largerWorkCitation
program
Oligotrophic phytoplankton community response to changes in N substrates and the resulting impact on genetic, taxonomic and functional diversity
https://osprey.bco-dmo.org/project/471899
Oligotrophic phytoplankton community response to changes in N substrates and the resulting impact on genetic, taxonomic and functional diversity
<p>(Extracted from NSF award abstract)</p>
<p>Marine phytoplankton are a diverse group of Prokaryotic and Eukaryotic unicellular organisms that account for approximately 50% of global carbon fixation. Nitrogen (N) is an essential element for microbial growth, but concentrations of bioavailable nitrogen in vast regions of subtropical ocean gyres are extremely low (submicromolar to nanomolar concentrations), and generally limit phytoplankton growth. Phytoplankton taxa differ in their genetic capabilities to take up and assimilate nutrients, and thus competition for different chemical forms of N (NH4+, NO3- and urea) and supply of these N-containing compounds are important controls on phytoplankton growth, productivity, and ultimately ecosystem function. The form and supply of N to phytoplankton have already been altered by anthropogenic activities, and with increasing environmental perturbations the effects will accelerate. To date however, there is limited information on how the N forms and fluxes impact the marine phytoplankton community composition and primary production. Similarly, determining the mechanisms of the response are crucial to assessing how ocean ecosystem function will respond to global climate change.</p>
<p>This project seeks to determine how taxonomic, genetic and functional dimensions of phytoplankton diversity are linked with community-level responses to the availability of different N substrates (NH4+, NO3-, and urea) in one of Earth's largest aquatic habitats, the North Pacific Subtropical Gyre. The project will characterize phytoplankton community composition change and gene expression, photosynthetic performance, carbon fixation, and single-cell level N and C uptake in different taxa within the phytoplankton assemblage in response to different N compounds. The research project is unique in investigating community-to-single-cell level function and species (strain)-specific gene expression patterns using state-of-the-art methods including fast repetition rate fluorometry, nanoscale secondary ion mass spectrometry and a comprehensive marine microbial community microarray. The results will provide predictive understanding of how changes in the availability of key nitrogen pools (N) may impact phytoplankton dynamics and function in the ocean.</p>
<p>References:</p>
<p>Karl, D. M., Bjorkman, K. M., Dore, J. E., Fujieki, L., Hebel, D. V., Houlihan, T., Letelier, R. M., Tupas, L. M. 2001. Ecological nitrogen-to-phosphorus stoichiometry at station ALOHA. Deep-Sea Research II. 48:1529 - 1566.</p>
<p>Karl, D. M., Letelier, R., Tupas, L., Dore, J., Christian, J. & Hebel, D. 1997. The role of nitrogen fixation in biogeochemical cycling in the subtropical North Pacific Ocean. Nature. 388:533-538.</p>
<p>McCarthy, J., Taylor, W. R., Taft, J. 1997. Nitrogenous nutrition of the plankton in the Chesapeake Bay. Limnology and Oceanography. 35:822 - 829.</p>
<p>Letelier, R., Karl, D. M. 1996. Role of Trichodesmium spp. in the productivity of the subtropical North Pacific Ocean. Marine Ecology Progress Series. 133:263 - 273.</p>
<p>Lipschultz, F. 1995. Nitrogen-specific uptake rates of marine phytoplankton isolated from natura populations of particles by flow cytometry. Marine Ecology Progress Series. 123:245-258.</p>
PhytoNsubResponse
largerWorkCitation
project
eng; USA
oceans
Eastern Pacific between San Diego and Hawaii
-158.633
-117.523
21.684
34.9707
2014-08-08
2014-09-16
North Pacific Subtropical Gyre at Station ALOHA, and a transect from San Diego, CA to Hawaii
0
BCO-DMO catalogue of parameters from Niskin bottle sample data from R/V New Horizon NEMO cruise NH1417 in the Eastern Pacific between San Diego and Hawaii from August to September 2014 (Phyto response to N substrates project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/730014.rdf
Name: EXPOCODE
Units: unitless
Description: <p>expedition code assigned by the CCHDO: NODCShipCodeYearMonthDay</p>
http://lod.bco-dmo.org/id/dataset-parameter/730015.rdf
Name: SECT_ID
Units: unitless
Description: <p>cruise section identification number</p>
http://lod.bco-dmo.org/id/dataset-parameter/730016.rdf
Name: STNNBR
Units: unitless
Description: <p>station number</p>
http://lod.bco-dmo.org/id/dataset-parameter/730017.rdf
Name: CASTNO
Units: unitless
Description: <p>cast number</p>
http://lod.bco-dmo.org/id/dataset-parameter/730018.rdf
Name: BTLNBR
Units: unitless
Description: <p>Bottle Number</p>
http://lod.bco-dmo.org/id/dataset-parameter/730019.rdf
Name: BTLNBR_FLAG_W
Units: unitless
Description: <p>Bottle Quality Flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730020.rdf
Name: DATE
Units: years days months
Description: <p>Station Date (GMT); format is YYYYMMDD</p>
http://lod.bco-dmo.org/id/dataset-parameter/730021.rdf
Name: TIME
Units: hours and minutes
Description: <p>Station Time (GMT); format is HHMM</p>
http://lod.bco-dmo.org/id/dataset-parameter/730022.rdf
Name: LATITUDE
Units: decimal degrees
Description: <p>Station Latitude (South is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730023.rdf
Name: LONGITUDE
Units: decimal degrees
Description: <p>Station Longitude (West is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730024.rdf
Name: DEPTH
Units: meters
Description: <p>CTD depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/730025.rdf
Name: CTDPRS
Units: decibars
Description: <p>CTD pressure</p>
http://lod.bco-dmo.org/id/dataset-parameter/730026.rdf
Name: CTDTMP_UP
Units: degrees Celsius
Description: <p>Temperature from CTD upcast (Sea-Bird Model 03, ITS-90)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730027.rdf
Name: CTDTMP_UP_FLAG_W
Units: unitless
Description: <p>Temperature from CTD upcast (CTDTMP_UP) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730028.rdf
Name: CTDTMP1_UP
Units: degrees Celsius
Description: <p>Temperature from CTD upcast (ITS-90)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730029.rdf
Name: CTDTMP1_UP_FLAG_W
Units: unitless
Description: <p>Temperature from CTD upcast (CTDTMP1_UP) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730030.rdf
Name: CTDSAL_UP
Units: Practical Salinity Units (PSU)
Description: <p>Salinity (primary, PSS-78) from CTD upcast</p>
http://lod.bco-dmo.org/id/dataset-parameter/730031.rdf
Name: CTDSAL_UP_FLAG_W
Units: unitless
Description: <p>Salinity (primary, PSS-78) from CTD upcast) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730032.rdf
Name: CTDSAL2_UP
Units: Practical Salinity Units (PSU)
Description: <p>Salinity (secondary, PSS-78) from CTD upcast</p>
http://lod.bco-dmo.org/id/dataset-parameter/730033.rdf
Name: CTDSAL2_UP_FLAG_W
Units: unitless
Description: <p>Salinity (secondary, PSS-78) from CTD upcast) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730034.rdf
Name: CTDOXY_UP
Units: milliliters per liter (ml/l)
Description: <p>Dissolved oxygen from CTD upcast (SBE 43)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730035.rdf
Name: CTDOXY_UP_FLAG_W
Units: unitless
Description: <p>Dissolved oxygen from CTD upcast (SBE 43) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730036.rdf
Name: CTDFLUOR_UP
Units: milligrams per meter cubed (mg/m^3)
Description: <p>Fluorescence from CTD upcast</p>
http://lod.bco-dmo.org/id/dataset-parameter/730037.rdf
Name: CTDFLUOR_UP_FLAG_W
Units: unitless
Description: <p>Fluorescence from CTD upcast quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730038.rdf
Name: CTDTRANS_UP
Units: percent (%)
Description: <p>Beam transmission from CTD upcast</p>
http://lod.bco-dmo.org/id/dataset-parameter/730039.rdf
Name: CTDTRANS_UP_FLAG_W
Units: unitless
Description: <p>Beam transmission from CTD upcast quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730040.rdf
Name: CTDPAR_UP
Units: microEinsteins per meter squared per second (uE/m^2/s)
Description: <p>Photosynthetically Active Radiation (PAR) from CTD upcast</p>
http://lod.bco-dmo.org/id/dataset-parameter/730041.rdf
Name: CTDPAR_UP_FLAG_W
Units: unitless
Description: <p>Photosynthetically Active Radiation (PAR) from CTD upcast quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730042.rdf
Name: CTDSPAR_UP
Units: microEinsteins per meter squared per second (uE/m^2/s)
Description: <p>Surface Photosynthetically Active Radiation from CTD upcast</p>
http://lod.bco-dmo.org/id/dataset-parameter/730043.rdf
Name: CTDSPAR_UP_FLAG_W
Units: unitless
Description: <p>Surface Photosynthetically Active Radiation from CTD upcast quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730044.rdf
Name: Chlorophyll_a
Units: micrograms per liter (ug/L)
Description: <p>Chlorophyll a</p>
http://lod.bco-dmo.org/id/dataset-parameter/730045.rdf
Name: Chlorophyll_a_FLAG_W
Units: unitless
Description: <p>Chlorophyll a quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730046.rdf
Name: Chlorophyll_a_STDEV
Units: micrograms per liter (ug/L)
Description: <p>Standard deviation of Chlorophyll a</p>
http://lod.bco-dmo.org/id/dataset-parameter/730047.rdf
Name: Chlorophyll_a_STDEV_FLAG_W
Units: unitless
Description: <p>Standard deviation of Chlorophyll a quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730048.rdf
Name: POC
Units: micromoles per liter (umol/L)
Description: <p>Particulate organic carbon concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/730049.rdf
Name: POC_FLAG_W
Units: unitless
Description: <p>Particulate organic carbon concentration quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730050.rdf
Name: PON
Units: micromoles per liter (umol/L)
Description: <p>Particulate organic nitrogen concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/730051.rdf
Name: PON_FLAG_W
Units: unitless
Description: <p>Particulate organic nitrogen concentration quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730052.rdf
Name: NITRAT
Units: micromoles per liter (umol/L)
Description: <p>Nitrate (NO3) concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/730053.rdf
Name: NITRAT_FLAG_W
Units: unitless
Description: <p>Nitrate (NO3) concentration quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730054.rdf
Name: NITRAT_STDEV
Units: micromoles per liter (umol/L)
Description: <p>Nitrate (NO3) concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/730055.rdf
Name: NITRAT_STDEV_FLAG_W
Units: unitless
Description: <p>Nitrate (NO3) concentration quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730056.rdf
Name: PHSPHT
Units: micromoles per liter (umol/L)
Description: <p>Phosphate (PO4) concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/730057.rdf
Name: PHSPHT_FLAG_W
Units: unitless
Description: <p>Phosphate (PO4) concentration quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730058.rdf
Name: PHSPHT_STDEV
Units: micromoles per liter (umol/L)
Description: <p>Phosphate (PO4) concentration standard deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730059.rdf
Name: PHSPHT_STDEV_FLAG_W
Units: unitless
Description: <p>Phosphate (PO4) concentration standard deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730060.rdf
Name: N2_FIXATION
Units: nanomoles per liter per hour (nmol/L/h)
Description: <p>Dinitrogen Fixation (15N2 enrichment)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730061.rdf
Name: N2_FIXATION_FLAG_W
Units: unitless
Description: <p>Dinitrogen Fixation (15N2 enrichment) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730062.rdf
Name: N2_FIXATION_STDEV
Units: nanomoles per liter per hour (nmol/L/h)
Description: <p>Dinitrogen Fixation (15N2 enrichment) standard deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730063.rdf
Name: N2_FIXATION_STDEV_FLAG_W
Units: unitless
Description: <p>Dinitrogen Fixation (15N2 enrichment) standard deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730064.rdf
Name: FRRF_Fo_Color1
Units: relative
Description: <p>Initial Flourescence (445-450nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730065.rdf
Name: FRRF_Fo_Color1_FLAG_W
Units: unitless
Description: <p>Initial Flourescence (445-450nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730066.rdf
Name: FRRF_Fo_Color1_STDEV
Units: relative
Description: <p>Initial Flourescence (445-450nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730067.rdf
Name: FRRF_Fo_Color1_STDEV_FLAG_W
Units: unitless
Description: <p>Initial Flourescence (445-450nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730068.rdf
Name: FRRF_FvFm_Color1
Units: dimensionless
Description: <p>Maximum Photochemical Efficiency (Fv/Fm) of Photosystem II (445-450nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730069.rdf
Name: FRRF_FvFm_Color1_FLAG_W
Units: unitless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (445-450nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730070.rdf
Name: FRRF_FvFm_Color1_STDEV
Units: dimensionless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (445-450nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730071.rdf
Name: FRRF_FvFm_Color1_STDEV_FLAG_W
Units: unitless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (445-450nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730072.rdf
Name: FRRF_Sig_Color1
Units: 10^-20 M^2/QUANTA
Description: <p>Functional Absorbtion Cross section (445-450nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730073.rdf
Name: FRRF_Sig_Color1_FLAG_W
Units: unitless
Description: <p>Functional Absorbtion Cross section (445-450nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730074.rdf
Name: FRRF_Sig_Color1_STDEV
Units: 10^-20 M^2/QUANTA
Description: <p>Functional Absorbtion Cross section (445-450nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730075.rdf
Name: FRRF_Sig_Color1_STDEV_FLAG_W
Units: unitless
Description: <p>Functional Absorbtion Cross section (445-450nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730076.rdf
Name: FRRF_Fo_Color2
Units: unitless
Description: <p>Initial Flourescence (470nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730077.rdf
Name: FRRF_Fo_Color2_FLAG_W
Units: unitless
Description: <p>Initial Flourescence (470nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730078.rdf
Name: FRRF_Fo_Color2_STDEV
Units: relative
Description: <p>Initial Flourescence (470nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730079.rdf
Name: FRRF_Fo_Color2_STDEV_FLAG_W
Units: unitless
Description: <p>Initial Flourescence (470nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730080.rdf
Name: FRRF_FvFm_Color2
Units: dimensionless
Description: <p>Maximum Photochemical Efficiency (Fv/Fm) of Photosystem II (470nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730081.rdf
Name: FRRF_FvFm_Color2_FLAG_W
Units: unitless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (470nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730082.rdf
Name: FRRF_FvFm_Color2_STDEV
Units: dimensionless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (470nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730083.rdf
Name: FRRF_FvFm_Color2_STDEV_FLAG_W
Units: unitless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (470nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730084.rdf
Name: FRRF_Sig_Color2
Units: 10^-20 M^2/QUANTA
Description: <p>Functional Absorbtion Cross section (470nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730085.rdf
Name: FRRF_Sig_Color2_FLAG_W
Units: unitless
Description: <p>Functional Absorbtion Cross section (470nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730086.rdf
Name: FRRF_Sig_Color2_STDEV
Units: 10^-20 M^2/QUANTA
Description: <p>Functional Absorbtion Cross section (470nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730087.rdf
Name: FRRF_Sig_Color2_STDEV_FLAG_W
Units: unitless
Description: <p>Functional Absorbtion Cross section (470nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730088.rdf
Name: FRRF_Fo_Color3
Units: relative
Description: <p>Initial Flourescence (505nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730089.rdf
Name: FRRF_Fo_Color3_FLAG_W
Units: unitless
Description: <p>Initial Flourescence (505nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730090.rdf
Name: FRRF_Fo_Color3_STDEV
Units: relative
Description: <p>Initial Flourescence (505nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730091.rdf
Name: FRRF_Fo_Color3_STDEV_FLAG_W
Units: unitless
Description: <p>Initial Flourescence (505nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730092.rdf
Name: FRRF_FvFm_Color3
Units: dimensionless
Description: <p>Maximum Photochemical Efficiency (Fv/Fm) of Photosystem II (505nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730093.rdf
Name: FRRF_FvFm_Color3_FLAG_W
Units: unitless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (505nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730094.rdf
Name: FRRF_FvFm_Color3_STDEV
Units: dimensionless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (505nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730095.rdf
Name: FRRF_FvFm_Color3_STDEV_FLAG_W
Units: unitless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (505nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730096.rdf
Name: FRRF_Sig_Color3
Units: 10^-20 M^2/QUANTA
Description: <p>Functional Absorbtion Cross section (505nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730097.rdf
Name: FRRF_Sig_Color3_FLAG_W
Units: unitless
Description: <p>Functional Absorbtion Cross section (505nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730098.rdf
Name: FRRF_Sig_Color3_STDEV
Units: 10^-20 M^2/QUANTA
Description: <p>Functional Absorbtion Cross section (505nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730099.rdf
Name: FRRF_Sig_Color3_STDEV_FLAG_W
Units: unitless
Description: <p>Functional Absorbtion Cross section (505nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730100.rdf
Name: FRRF_Fo_Color4
Units: relative
Description: <p>Initial Flourescence (530nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730101.rdf
Name: FRRF_Fo_Color4_FLAG_W
Units: unitless
Description: <p>Initial Flourescence (530nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730102.rdf
Name: FRRF_Fo_Color4_STDEV
Units: relative
Description: <p>Initial Flourescence (530nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730103.rdf
Name: FRRF_Fo_Color4_STDEV_FLAG_W
Units: unitless
Description: <p>Initial Flourescence (530nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730104.rdf
Name: FRRF_FvFm_Color4
Units: dimensionless
Description: <p>Maximum Photochemical Efficiency (Fv/Fm) of Photosystem II (530nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730105.rdf
Name: FRRF_FvFm_Color4_FLAG_W
Units: unitless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (530nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730106.rdf
Name: FRRF_FvFm_Color4_STDEV
Units: dimensionless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (530nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730107.rdf
Name: FRRF_FvFm_Color4_STDEV_FLAG_W
Units: unitless
Description: <p>Maximum Photochemical Efficiency of Photosystem II (530nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730108.rdf
Name: FRRF_Sig_Color4
Units: 10^-20 M^2/QUANTA
Description: <p>Functional Absorbtion Cross section (530nm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/730109.rdf
Name: FRRF_Sig_Color4_FLAG_W
Units: unitless
Description: <p>Functional Absorbtion Cross section (530nm) quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730110.rdf
Name: FRRF_Sig_Color4_STDEV
Units: 10^-20 M^2/QUANTA
Description: <p>Functional Absorbtion Cross section (530nm) Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730111.rdf
Name: FRRF_Sig_Color4_STDEV_FLAG_W
Units: unitless
Description: <p>Functional Absorbtion Cross section (530nm) Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730112.rdf
Name: PRIPROD
Units: micrograms of carbon per liter per day (ug/L/d)
Description: <p>Primary Productivity</p>
http://lod.bco-dmo.org/id/dataset-parameter/730113.rdf
Name: PRIPROD_FLAG_W
Units: unitless
Description: <p>Primary Productivity quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730114.rdf
Name: PRIPROD_STDEV
Units: unitless
Description: <p>Primary Productivity Standard Deviation</p>
http://lod.bco-dmo.org/id/dataset-parameter/730115.rdf
Name: PRIPROD_STDEV_FLAG
Units: unitless
Description: <p>Primary Productivity Standard Deviation quality flag</p>
http://lod.bco-dmo.org/id/dataset-parameter/730116.rdf
Name: SAMPNO
Units: unitless
Description: <p>Sample Number</p>
http://lod.bco-dmo.org/id/dataset-parameter/730117.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>ISO_DateTime_UTC,ISO timestamp based on the ISO 8601:2004(E) standard in format YYYY-mm-ddTHH:MM (UTC),unitless,nd,ISO_DateTime_UTC</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
1391669
https://datadocs.bco-dmo.org/file/5AAMk82sg5g2gz/bottle.csv
bottle.csv
Primary data file for dataset ID 685756
download
https://osprey.bco-dmo.org/dataset/685756/data/download
download
onLine
dataset
<p>Samples were collected using standard oceanographic techniques. A CTD Rosette with 24 10L Niskin bottles was lowered to the maximum sampling depth and then brought back to the surface. Water was collected during upcasts at discrete depths. Once on board seawater was collected from each bottle for analysis. CTD data included are also from the upcasts.</p>
Specified by the Principal Investigator(s)
<p>Data quality flags are the same as defined in the World Ocean Circulation Experiment (WOCE) and are as follows:</p>
<p><strong>Citations for methods and calculations:</strong></p>
<p>FRRF measurements: Kolber et al. (1998) Biochimica et Biophysica Acta 1367:88-106<br />
14C Primary Production:&nbsp;Lohrenz et al. (1992) Journal of Plankton Research 14:201-221<br />
N2 Fixation: Wilson et al. (2012) Applied Environmental Microbiology 78:6491-6498<br />
Chl&nbsp;a:&nbsp;Welschmeyer (1994) Limnology and Oceanography 39:1985-1992</p>
<p><strong>Quality flag definitions for water bottles:</strong></p>
<p>1 = Bottle information unavailable.</p>
<p>2 = No problems noted.</p>
<p>3 = Leaking.</p>
<p>4 = Did not trip correctly.</p>
<p>5 = Not reported.</p>
<p>6 = Significant discrepancy in measured values between Gerard and Niskin bottles.</p>
<p>7 = Unknown problem.</p>
<p>8 = Pair did not trip correctly. Note that the Niskin bottle can trip at an unplanned depth while the Gerard trips correctly and vice versa.</p>
<p>9 = Samples not drawn from this bottle.</p>
<p><strong>BCO-DMO Data Manager Processing Notes:</strong><br />
* added a conventional header with dataset name, PI name, version date<br />
* modified parameter names to conform with BCO-DMO naming conventions<br />
* Added ISO formatted timestamp from TIME and DATE<br />
* original missing data value '-999' displayed as "nd" for no data in the bco-dmo system</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
CTD Rosette
CTD Rosette
PI Supplied Instrument Name: CTD Rosette Instrument Name: CTD - profiler Instrument Short Name: Instrument Description: The Conductivity, Temperature, Depth (CTD) unit is an integrated instrument package designed to measure the conductivity, temperature, and pressure (depth) of the water column. The instrument is lowered via cable through the water column. It permits scientists to observe the physical properties in real-time via a conducting cable, which is typically connected to a CTD to a deck unit and computer on a ship. The CTD is often configured with additional optional sensors including fluorometers, transmissometers and/or radiometers. It is often combined with a Rosette of water sampling bottles (e.g. Niskin, GO-FLO) for collecting discrete water samples during the cast.
This term applies to profiling CTDs. For fixed CTDs, see https://www.bco-dmo.org/instrument/869934. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/130/
PI Supplied Instrument Name: Instrument Name: Niskin bottle Instrument Short Name:Niskin bottle Instrument Description: A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/
Cruise: NH1417
NH1417
R/V New Horizon
Community Standard Description
International Council for the Exploration of the Sea
R/V New Horizon
vessel
NH1417
Matthew M. Mills
Stanford University
R/V New Horizon
Community Standard Description
International Council for the Exploration of the Sea
R/V New Horizon
vessel