<div><p><strong>SAMPLE INFORMATION</strong></p>
<p>Sample identifiers include the following codes.</p>
<p><strong>MOCNESS tow</strong><br />
FA3: Night sampling<br />
FA4: Day sampling</p>
<p><strong>Depth range:</strong><br />
N1: 1500-1000m<br />
N2: 1000-700m<br />
N3: 700-500m<br />
N4: 500-300m<br />
N5: 300-200m<br />
N6: 200-150m<br />
N7: 150-100m<br />
N8: 100-50m<br />
N9: 50m-0m</p>
<p><strong>Wet-sieved zooplankton size fractions</strong><br />
SF1: 0.2-0.5 mm<br />
SF2: 0.5-1.0 mm<br />
SF3: 1.0-2.0 mm</p></div>
NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample
<div><p>These data include sample information and accession links to sequence data at The National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA).</p>
<p>This data submission consists of metabarcoding data for the zooplankton community in the epipelagic, mesopelagic and upper bathypelagic zones (0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to assess the hidden diversity present in zooplankton assemblages in midwaters, and detect vertical gradients in species richness, depth distributions, and community composition of the full zooplankton assemblage. Samples were collected in June 2014 from Station ALOHA (22.75, -158) using a 1 meter square Multiple Opening and Closing Nets and Environmental Sampling System (MOCNESS, 200um mesh), on R/V Falkor cruise FK140613. Next generation sequence data (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton assemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers described in Fonseca et al. 2010). The data includes sequences and read count abundance information for molecular OTUs from both holoplanktonic and meroplanktonic taxa</p>
<p>Related dataset containing OTU tables and fasta sequences (representative / most abundance read for each OTU):<br /><a href="http://www.bco-dmo.org/dataset/700279">Metabarcoding zooplankton at </a><a href="http://www.bco-dmo.org/dataset/700279">station</a><a href="http://www.bco-dmo.org/dataset/700279"> ALOHA: OTU tables and </a><a href="http://www.bco-dmo.org/dataset/700279">fasta</a><a href="http://www.bco-dmo.org/dataset/700279"> files</a></p></div>
Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers
<div><p>BCO-DMO processing notes:<br />
* commas in the data were replaced with semicolons to support export as csv format.</p></div>
700961
Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers
2017-05-25T15:52:10-04:00
2017-05-25T15:52:10-04:00
2023-07-07T16:10:26-04:00
urn:bcodmo:dataset:700961
NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project)
false
Goetze, E. (2017) NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2017-05-25 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.704665 [access date]
true
10.1575/1912/bco-dmo.704665
false
Metabarcoding
station ALOHA
mesopelagic and bathypelagic zooplankton
community composition
2017-05-25
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700961
http://lod.bco-dmo.org/id/dataset/700961
2014-06-13 - 2014-06-19
2014-06-13
2014-06-13
---13
163
--06
2014
2014-06-19
2014-06-19
---19
169
--06
2014
OSPREY
http://www.opengis.net/def/crs/OGC/1.3/CRS84
<http://www.opengis.net/def/crs/OGC/1.3/CRS84> POINT (-158 22.75)
22.75
-158
22.750000000000
-158.000000000000