http://lod.bco-dmo.org/id/dataset/708855
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-07-17
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Shallow reef pH, dissolved oxygen, temperature, and salinity from seaphox sensors deployed at Bocas del Toro, Panama in November of 2015 (Coral Calcification Physiology project)
2018-01-09
publication
2018-01-09
revision
BCO-DMO Linked Data URI
2018-01-09
creation
http://lod.bco-dmo.org/id/dataset/708855
Dr David I. Kline
University of California-San Diego Scripps
principalInvestigator
Dr Martin Tresguerres
University of California-San Diego Scripps
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Kline, D. I., Tresguerres, M. (2018) Shallow reef pH, dissolved oxygen, temperature, and salinity from seaphox sensors deployed at Bocas del Toro, Panama in November of 2015 (Coral Calcification Physiology project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2018-01-09 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/708855 [access date]
pH, temperature, salinity, and dissolved oxygen values from seaphox sensors Dataset Description: <p>This dataset includes pH, dissolved oxygen,&nbsp;temperature, and salinity values from seaphox&nbsp;sensor deployments at 1-8 m depths in shallow reefs in Bocas del Toro, Panama.</p> Methods and Sampling: <p>Seaphox sensors were deployed at shallow coral reefs off of the island of Bocas del Toro&nbsp;at the following locations:</p>
<p><strong>Punta Caracol (PC) </strong>Lat 9.3779,&nbsp;Lon -82.3034<br />
Deployment names: PC 1m, PC 3m, PC 8m, PC 12m</p>
<p><strong>Punta Vieja (PV) </strong>Lat 9.2478, Lon -82.1129<br />
Deployment names: PV 3m, PV 8m<br />
&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1538495 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1538495
completed
Dr David I. Kline
University of California-San Diego Scripps
858-534-8947
9500 Gilman Drive, Mail Code #0218
La Jolla
CA
92093-0218
USA
dkline@ucsd.edu
pointOfContact
Dr Martin Tresguerres
University of California-San Diego Scripps
858-534-5895
9500 Gilman Drive, Mail Code #0202
La Jolla
CA
92093-0202
USA
mtresguerres@ucsd.edu
pointOfContact
asNeeded
Unknown
Date_local
Time_local
ISO_DateTime_UTC
T
S
DO
pH
Deployment
Depth
Location
Lat
Lon
Seaphox, Scripps Institution of oceanography
theme
None, User defined
date
time of day
ISO_DateTime_UTC
water temperature at measurement depth
salinity
dissolved Oxygen
pH
sample description
depth
site
latitude
longitude
featureType
BCO-DMO Standard Parameters
SeapHOx/SeaFET
instrument
BCO-DMO Standard Instruments
Kline_Bocas_del_Toro
service
Deployment Activity
Bocas del Toro, Panama
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Cellular physiological mechanisms for coral calcification and photosynthesis: extending lab-based models to the field
https://osprey.bco-dmo.org/project/651501
Cellular physiological mechanisms for coral calcification and photosynthesis: extending lab-based models to the field
<p><em>Description from NSF award abstract:</em><br />
Coral reefs are amongst the most biodiverse and productive ecosystems in the world, providing millions of dollars of ecosystem services to coastal communities. There is growing concern about the future of coral reefs and the impact of anthropogenic stressors including eutrophication, ocean acidification, warming and sea level rise. However, the lack of knowledge of fundamental coral cellular mechanisms limits our ability to understand and predict responses and to implement appropriate management decisions. This proposal will use a combination of field and laboratory experiments to use immunological techniques to study coral cellular responses to environmental conditions. This project will focus on processes related to calcification, photosynthesis and nutrient uptake and test in nature the relevance of mechanistic models obtained from laboratory experiments. Results from this study could help generate biomarkers for future physiological, ecological and interdisciplinary studies. To maximize the scientific, societal and educational impacts of this research, a coordinated set of activities will include: (1) Training of one graduate student in molecular, cellular, and ecological research. (2) Dissemination of results through journals, conferences and undergraduate and graduate physiology courses. (3) Partnering with the Birch Aquarium at Scripps to build awareness of coral reef biology, ecology and conservation issues and disseminate the findings of this study to the general public. These activities will reach hundreds of thousands of children and adults that attend Birch annually, and millions of viewers through online resources. (4) Engage and train undergraduate students from underrepresented minorities through the Scripps Undergraduate Research Fellowship summer program.</p>
<p>This research will use recently developed immunological techniques to localize and quantity proteins in specific coral cell types and determine coral responses to environmental conditions at the cellular level. One enzyme of interest is the vacuolar proton ATPase (VHA), which was recently found in the symbiosome membrane of gastrodermal cells and identified as essential for the coral's symbiotic algae to concentrate CO2 for photosynthesis. Another enzyme, the sodium/potassium ATPase (NKA), was immunolocalized to calicoblastic cells suggesting a role in calcification. Additionally, NKA was found in cells in corals from the Complex but not the Robust clades, suggesting a role in nutrient uptake only in the former. In the project a series of field and manipulative aquarium studies will be used to determine the physiological roles of VHA and NKA in two coral species, one from each clade. Specifically, this research will: (1) Localize and quantify VHA and NKA in specific tissue layers of Acropora cervicornis and Orbicella annularis from 1 and 5m depth at a lagoonal and an open ocean exposed reef in Bocas del Toro, Panama. (2) Correlate potential differences in VHA and NKA to light, pH, and nutrient levels at the different field sites and depths, to study evolutionary adaptation to environmental conditions. (3) Perform one-year reciprocal transplantations to examine chronic acclimatization. (4) Perform one-month reciprocal transplantations to examine acute acclimatization. (5) In a flowing seawater system expose corals to a range of environmentally relevant nutrient, light and pH levels to determine if any of the single factors are causing changes in the cellular responses. In addition to characterizing responses to environmental conditions on a broad temporal scale from evolutionary, chronic, to acute exposure, this research will examine potential cellular mechanistic differences between Robust and Complex corals. The long-term goal is to generate biomarkers based on specific cellular physiology processes to explain and predict effects of environmental stress (e.g. eutrophication, ocean acidification, and sea level rise) on coral homeostatic responses.</p>
Coral Calcification Physiology
largerWorkCitation
project
eng; USA
oceans
Bocas del Toro, Panama
-82.3034
-82.1129
9.2478
9.3779
2015-11-03
2015-11-19
Bocas del Toro, Panama
0
BCO-DMO catalogue of parameters from Shallow reef pH, dissolved oxygen, temperature, and salinity from seaphox sensors deployed at Bocas del Toro, Panama in November of 2015 (Coral Calcification Physiology project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/722885.rdf
Name: Date_local
Units: unitless
Description: <p>Date (Panama local time UTC-5)</p>
http://lod.bco-dmo.org/id/dataset-parameter/722886.rdf
Name: Time_local
Units: unitless
Description: <p>Time (Panama local time UTC-5)</p>
http://lod.bco-dmo.org/id/dataset-parameter/722887.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>ISO timestamp based on the ISO 8601:2004(E) standard in format yyyy-mm-ddThh:mm+|-hh:mm</p>
http://lod.bco-dmo.org/id/dataset-parameter/722888.rdf
Name: T
Units: degrees Celcius
Description: <p>Temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/722889.rdf
Name: S
Units: Practical Salinity Units (PSU)
Description: <p>Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/722890.rdf
Name: DO
Units: uMol
Description: <p>Dissolved Oxygen</p>
http://lod.bco-dmo.org/id/dataset-parameter/722891.rdf
Name: pH
Units: Seawater pH units
Description: <p>Seawater pH</p>
http://lod.bco-dmo.org/id/dataset-parameter/722892.rdf
Name: Deployment
Units: unitless
Description: <p>Deployment name (location code plus depth)</p>
http://lod.bco-dmo.org/id/dataset-parameter/722893.rdf
Name: Depth
Units: meters
Description: <p>Depth of sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/722894.rdf
Name: Location
Units: unitless
Description: <p>Location name</p>
http://lod.bco-dmo.org/id/dataset-parameter/722895.rdf
Name: Lat
Units: decimal degrees
Description: <p>Latitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/722896.rdf
Name: Lon
Units: decimal degrees
Description: <p>Longitude</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://osprey.bco-dmo.org/dataset/708855/data/download
download
onLine
dataset
<p>Seaphox sensors were deployed at shallow coral reefs off of the island of Bocas del Toro&nbsp;at the following locations:</p>
<p><strong>Punta Caracol (PC) </strong>Lat 9.3779,&nbsp;Lon -82.3034<br />
Deployment names: PC 1m, PC 3m, PC 8m, PC 12m</p>
<p><strong>Punta Vieja (PV) </strong>Lat 9.2478, Lon -82.1129<br />
Deployment names: PV 3m, PV 8m<br />
&nbsp;</p>
Specified by the Principal Investigator(s)
<p>Seaphox sensors were calibrated from discrete seawater samples taken in the field at the time the&nbsp;Seaphox sensors were deployed&nbsp;using best practices described in Bresnahan et al. 2014.</p>
<p>BCO-DMO Data Manager Processing Notes&nbsp;<br />
* added location names and lat lons for deployments<br />
* splitting timestamp into date and time<br />
* After discussion with data contributor:<br />
*&nbsp; &nbsp; Changed name Date and Time to Date_local and Time_local for date and time&nbsp;in Panama local time, UTC -05:00.<br />
*&nbsp; &nbsp; Added timestamp in ISO 8601 Notation&nbsp;yyyy-mm-ddThh:mm+|-hh:mm so the time zone is captured<br />
*&nbsp; &nbsp; Removed color formatting from Excel spreadsheet and comments</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Seaphox, Scripps Institution of oceanography
Seaphox, Scripps Institution of oceanography
PI Supplied Instrument Name: Seaphox, Scripps Institution of oceanography PI Supplied Instrument Description:Seaphox, Scripps Institution of oceanography, Model number 038, 039, 054 and 055 Instrument Name: SeapHOx/SeaFET Instrument Short Name:SeapHOx/SeaFET Instrument Description: The SeapHOx and SeaFET are autonomous sensors originally designed and developed by the Todd Martz Lab at Scripps Institution of Oceanography. The SeaFET was designed to measure pH and temperature. The SeapHOx, designed later, combined the SeaFET with additional integrated sensors for dissolved oxygen and conductivity. Refer to Martz et al. 2010 (doi:10.4319/lom.2010.8.172).
The SeapHOx package is now produced by Sea-Bird Scientific and allows for integrated data collection of pH, temperature, salinity, and oxygen. Refer to Sea-Bird for specific model information.
Deployment: Kline_Bocas_del_Toro
Kline_Bocas_del_Toro
Panama_shore
shoreside
Kline_Bocas_del_Toro
Dr David I. Kline
University of California-San Diego Scripps
Panama_shore
shoreside