http://lod.bco-dmo.org/id/dataset/709224
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-07-19
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Isotopes from B. gymnorhiza mangroves in Palau during 2013
2017-07-19
publication
2017-07-19
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-05-26
publication
https://doi.org/10.26008/1912/bco-dmo.709224.1
Julian P. Sachs
University of Washington
principalInvestigator
Dr Nemiah Ladd
University of Washington
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Sachs, J. P., Ladd, N. (2021) Isotopes from B. gymnorhiza mangroves in Palau during 2013. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2017-07-19 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.709224.1 [access date]
Isotopes from B. gymnorhiza mangroves in Palau in 2013. Dataset Description: <p>Lipid and water δ<sup>2</sup>H and δ<sup>18</sup>O from B. gymnorhiza mangroves in Palau during 2013.</p> Methods and Sampling: <p>All methodology was described in <a href="http://www.sciencedirect.com/science/article/pii/S0016703717300601?via%3Dihub" target="_blank">Ladd &amp; Sachs, GCA, 2017, doi:&nbsp;10.1016/j.gca.2017.01.046</a></p>
<p>Leaf and stem samples were collected from three replicate trees on the north shore of each lake and stored frozen prior to analysis. Water samples were collected from 1cm below the lake surface, and salinity was measured with a refractometer.</p>
<p>Leaf and stem water were cryogenically extracted on a vacuum line at ETH Zurich. Leaf lipids were extracted using a Dionex Accelerated Solvent Extractor (ASE 200). Total lipid extracts were saponified with KOH in MeOH (12 hours at 60 deg C). Following saponification, hexane soluble lipids were then separated into&nbsp;hydrocarbon,&nbsp;wax&nbsp;ester, alcohol and polar fractions via a silica gel column chromatography. Alcohol fractions were acetylated with&nbsp;acetic&nbsp;anhydride of known H isotopic composition prior to analysis by GC.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1241247 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1241247
completed
Julian P. Sachs
University of Washington
206-221-5630
School of Oceanography Box 357940
Seattle
WA
357940
United States
jsachs@washington.edu
pointOfContact
Dr Nemiah Ladd
University of Washington
+41 79 869 4345
Eawag, Department of Surface Waters Research and Management Seestrasse 79, 6047
Kastanienbaum
Switzerland
snladd@uw.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
sample
lat
lon
date
time
salinity
dD_surface_water
s1_dD_surface_water
d18O_surface_water
s1_d18O_surface_water
lupeol_dD
lupeol_St_dev
lupeol_n
nC31_dD
nC31_st_dev
nC31_n
historic_sal
hist_sal_stdev
hist_sal_n
xylem_water_dD
s1_XW_dD
leaf_water_dD
s1_LW_dD
d18O_xw
s1_d18O_xw
d18O_lw
s1_d18O_lw
avg_rain_d2H_leaf_water_model
s1_rain_d2H
avg_rain_d18O
s1_rain_d18O
ISO_DateTime_UTC
Temperature Conversion Elemental Analyzer (TC/EA)
Thermo Delta V.
Thermo Delta V.
theme
None, User defined
sample identification
latitude
longitude
date
time of day
salinity
d2H
standard deviation
oxygen 16 to oxygen 18 ratio
number
ISO_DateTime_UTC
featureType
BCO-DMO Standard Parameters
Elemental Analyzer
Isotope-ratio Mass Spectrometer
Isotope-ratio Mass Spectrometer
instrument
BCO-DMO Standard Instruments
Ongael_2013-09
service
Deployment Activity
Ongael Lake, Palau
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Dimensions of Biodiversity
http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503446
Dimensions of Biodiversity
(adapted from the NSF Synopsis of Program)
Dimensions of Biodiversity is a program solicitation from the NSF Directorate for Biological Sciences. FY 2010 was year one of the program. [MORE from NSF]
The NSF Dimensions of Biodiversity program seeks to characterize biodiversity on Earth by using integrative, innovative approaches to fill rapidly the most substantial gaps in our understanding. The program will take a broad view of biodiversity, and in its initial phase will focus on the integration of genetic, taxonomic, and functional dimensions of biodiversity. Project investigators are encouraged to integrate these three dimensions to understand the interactions and feedbacks among them. While this focus complements several core NSF programs, it differs by requiring that multiple dimensions of biodiversity be addressed simultaneously, to understand the roles of biodiversity in critical ecological and evolutionary processes.
Dimensions of Biodiversity
largerWorkCitation
program
Do Parallel Patterns Arise from Parallel Processes?
http://marinelakes.ucmerced.edu/
Do Parallel Patterns Arise from Parallel Processes?
<p>This project will survey the taxonomic, genetic, and functional diversity of the organisms found in marine lakes, and investigate the processes that cause gains and losses in this biodiversity. Marine lakes formed as melting ice sheets raised sea level after the last glacial maximum and flooded hundreds of inland valleys around the world. Inoculated with marine life from the surrounding sea and then isolated to varying degrees for the next 6,000 to 15,000 years, these marine lakes provide multiple, independent examples of how environments and interactions between species can drive extinction and speciation. Researchers will survey the microbes, algae, invertebrates, and fishes present in 40 marine lakes in Palau and Papua, and study how diversity has changed over time by retrieving the remains of organisms preserved in sediments on the lake bottoms. The project will test whether the number of species, the diversity of functional roles played by organisms, and the genetic diversity within species increase and decrease in parallel; whether certain species can greatly curtail diversity by changing the environment; whether the size of a lake determines its biodiversity; and whether the processes that control diversity in marine organisms are similar to those that operate on land.</p>
<p>Because biodiversity underlies the ecosystem services on which society depends, society has a great interest in understanding the processes that generate and retain biodiversity in nature. This project will also help conserve areas of economic importance. Marine lakes in the study region are important for tourism, and researchers will work closely with governmental and non-governmental conservation and education groups and with diving and tourism businesses to raise awareness of the value and threats to marine lakes in Indonesia and Palau.</p>
PaPaPro
largerWorkCitation
project
eng; USA
oceans
Ongael Lake, Palau
134.1421
134.6035
6.9486
7.45
2013-09-12
2013-10-08
Western Pacific; Palau; Indonesia (West Papua)
0
BCO-DMO catalogue of parameters from Isotopes from B. gymnorhiza mangroves in Palau during 2013
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/712469.rdf
Name: sample
Units: unitless
Description: <p>Sample number</p>
http://lod.bco-dmo.org/id/dataset-parameter/712470.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude; N is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/712471.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude; E is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/712472.rdf
Name: date
Units: unitless
Description: <p>Date that sampling occurred; YYYY/MM/DD</p>
http://lod.bco-dmo.org/id/dataset-parameter/712473.rdf
Name: time
Units: unitless
Description: <p>Time that sampling occurred; HH:MM</p>
http://lod.bco-dmo.org/id/dataset-parameter/712474.rdf
Name: salinity
Units: ppt
Description: <p>Salinity of sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/712475.rdf
Name: dD_surface_water
Units: per mil (0/00)
Description: <p>H isotopes of surface water</p>
http://lod.bco-dmo.org/id/dataset-parameter/712476.rdf
Name: s1_dD_surface_water
Units: per mil (0/00)
Description: <p>1 standard deviation (analytical) of surface water H isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712477.rdf
Name: d18O_surface_water
Units: per mil (0/00)
Description: <p>O isotopes of surface water</p>
http://lod.bco-dmo.org/id/dataset-parameter/712478.rdf
Name: s1_d18O_surface_water
Units: per mil (0/00)
Description: <p>1 standard deviation (analytical) of surface water O isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712479.rdf
Name: lupeol_dD
Units: per mil (0/00)
Description: <p>H isotopes of Lupeol</p>
http://lod.bco-dmo.org/id/dataset-parameter/712480.rdf
Name: lupeol_St_dev
Units: per mil (0/00)
Description: <p>1 standard deviation (analytical) of lupeol H isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712481.rdf
Name: lupeol_n
Units: number
Description: <p>Number of replicate measurements of Lupeol H isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712482.rdf
Name: nC31_dD
Units: per mil (0/00)
Description: <p>H isotopes of nC31-alkane</p>
http://lod.bco-dmo.org/id/dataset-parameter/712483.rdf
Name: nC31_st_dev
Units: per mil (0/00)
Description: <p>1 standard deviation (analytical) of nC31 H isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712484.rdf
Name: nC31_n
Units: number
Description: <p>Number of replicate measurements of nC31 H isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712485.rdf
Name: historic_sal
Units: ppt
Description: <p>Average salinity measured by Coral Reef Research Foundation from 2007-2013</p>
http://lod.bco-dmo.org/id/dataset-parameter/712486.rdf
Name: hist_sal_stdev
Units: ppt
Description: <p>Standard deviation of historical salinity measurements</p>
http://lod.bco-dmo.org/id/dataset-parameter/712487.rdf
Name: hist_sal_n
Units: number
Description: <p>Number of measurements of salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/712488.rdf
Name: xylem_water_dD
Units: per mil (0/00)
Description: <p>H isotopes of xylem water</p>
http://lod.bco-dmo.org/id/dataset-parameter/712489.rdf
Name: s1_XW_dD
Units: per mil (0/00)
Description: <p>1 standard deviation (analytical) of xylem water H isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712490.rdf
Name: leaf_water_dD
Units: per mil (0/00)
Description: <p>H isotopes of leaf water</p>
http://lod.bco-dmo.org/id/dataset-parameter/712491.rdf
Name: s1_LW_dD
Units: per mil (0/00)
Description: <p>1 standard deviation (analytical) of leaf water H isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712492.rdf
Name: d18O_xw
Units: per mil (0/00)
Description: <p>O isotopes of xylem water</p>
http://lod.bco-dmo.org/id/dataset-parameter/712493.rdf
Name: s1_d18O_xw
Units: per mil (0/00)
Description: <p>1 standard deviation (analytical) of xylem water O isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712494.rdf
Name: d18O_lw
Units: per mil (0/00)
Description: <p>O isotopes of leaf water</p>
http://lod.bco-dmo.org/id/dataset-parameter/712495.rdf
Name: s1_d18O_lw
Units: per mil (0/00)
Description: <p>1 standard deviation (analytical) of leaf water O isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712496.rdf
Name: avg_rain_d2H_leaf_water_model
Units: per mil (0/00)
Description: <p>H rain water in Koror for closest three rain events</p>
http://lod.bco-dmo.org/id/dataset-parameter/712497.rdf
Name: s1_rain_d2H
Units: per mil (0/00)
Description: <p>1 standard deviation of rain water H isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712498.rdf
Name: avg_rain_d18O
Units: per mil (0/00)
Description: <p>O rain water in Koror for closest three rain events</p>
http://lod.bco-dmo.org/id/dataset-parameter/712499.rdf
Name: s1_rain_d18O
Units: per mil (0/00)
Description: <p>1 standard deviation of rain water O isotopes</p>
http://lod.bco-dmo.org/id/dataset-parameter/712500.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>DateTime ISO_UTC formatted</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
9181
https://darchive.mblwhoilibrary.org/bitstream/1912/27176/1/dataset-709224_b-gymnorhiza-isotopes__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.709224.1
download
onLine
dataset
<p>All methodology was described in <a href="http://www.sciencedirect.com/science/article/pii/S0016703717300601?via%3Dihub" target="_blank">Ladd &amp; Sachs, GCA, 2017, doi:&nbsp;10.1016/j.gca.2017.01.046</a></p>
<p>Leaf and stem samples were collected from three replicate trees on the north shore of each lake and stored frozen prior to analysis. Water samples were collected from 1cm below the lake surface, and salinity was measured with a refractometer.</p>
<p>Leaf and stem water were cryogenically extracted on a vacuum line at ETH Zurich. Leaf lipids were extracted using a Dionex Accelerated Solvent Extractor (ASE 200). Total lipid extracts were saponified with KOH in MeOH (12 hours at 60 deg C). Following saponification, hexane soluble lipids were then separated into&nbsp;hydrocarbon,&nbsp;wax&nbsp;ester, alcohol and polar fractions via a silica gel column chromatography. Alcohol fractions were acetylated with&nbsp;acetic&nbsp;anhydride of known H isotopic composition prior to analysis by GC.</p>
Specified by the Principal Investigator(s)
<p>All methodology was described in <a href="http://www.sciencedirect.com/science/article/pii/S0016703717300601?via%3Dihub" target="_blank">Ladd &amp; Sachs, GCA, 2017, doi:&nbsp;10.1016/j.gca.2017.01.046</a></p>
<p>Surface water and precipitation δ2H and δ18O values were measured with a Picarro Cavity Ring Down Spectroscopy (CRDS) L2130i Water Isotope Analyzer at the University of Washington&nbsp;measured.&nbsp;Three laboratory standards of known isotopic composition were analyzed after every six samples and were used to normalize results to the Vienna Standard Mean Ocean Water (VSMOW) scale. All samples and standards were injected six times, and the first three measurements were discarded in order to avoid any memory effects from the previous analysis. Leaf and xylem water samples were analyzed by a Thermal Conversion Elemental Analyzer (TC/EA) coupled to a Delta V Isotope Ratio Mass Spectrometer (IRMS; ThermoFisher Scientific, Waltham, MA) at the University of Basel, Switzerland. Each sample and standard&nbsp;was&nbsp;injected six times in sequence. In order to avoid any memory effects from the previous analysis, the first three injections of each sample were discarded.</p>
<p>The δ2H values of individual lipids were measured by GC-IRMS on a Thermo DELTA V PLUS system (ThermoFisher Scientific, Waltham, MA, USA). The GC (Trace Ultra, ThermoFisher Scientific) was equipped with a split-splitless injector operated in splitless mode at 320 deg C, a TRIPLUS autosampler (ThermoFisher Scientific), and a VF-17ms capillary column (60 m X 0.25 mm X 0.25 um, Agilent). For lupeol analyses, the GC was heated from 120 deg C to 260 deg C at 20 deg C/min, then at 1 deg C/min to 300 deg C, at 20 deg C/min to 325 deg C and then held at 325 deg C for 20 min.&nbsp;For&nbsp;n-alkane analyses, the GC was heated from 120 deg C to 250 deg C at 20 deg C/min, then at 6 deg C/min to 325 deg C and then held at 325 deg C for 12 min. Helium was used as the carrier gas at a constant flow of 1.1 mL/min. Compounds were pyrolyzed in a ceramic reactor at 1400 deg C. 1 uL of sample was injected along with 0.5 uL of a mix of&nbsp;n-alkanes of known isotopic composition (A. Schimmelmann, Indiana University, Bloomington, Indiana). For lupeol analyses, this mix included&nbsp;nC26-,&nbsp;nC28-,&nbsp;nC32-,&nbsp;nC34- and&nbsp;nC41-alkanes. For&nbsp;n-alkane analyses, the co-injection standards were&nbsp;nC21&nbsp;and&nbsp;nC23. At the beginning and the end of the sequence, as well as after every 4-6 sample injections, a mixture of additional&nbsp;n-alkane standards of known isotopic composition was analyzed with the co-injection standards, in place of a sample. For isoprenoid sequences, this external standard was&nbsp;nC38-alkane. For&nbsp;n-alkane sequences,&nbsp;nC28-,&nbsp;nC32- and&nbsp;nC34-alkanes were used as external standards.</p>
<p><strong>BCO-DMO Data Processing Notes:</strong></p>
<p>- reformatted column names to comply with BCO-DMO standards.<br />
- converted lat/lons from degree minute format to decimal degrees.<br />
- converted date format from YYMMDD to YYYY/MM/DD</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Temperature Conversion Elemental Analyzer (TC/EA)
Temperature Conversion Elemental Analyzer (TC/EA)
PI Supplied Instrument Name: Temperature Conversion Elemental Analyzer (TC/EA) PI Supplied Instrument Description:Paired with a Isotope-ratio Mass Spectrometer for leaf water and xylem water analysis Instrument Name: Elemental Analyzer Instrument Short Name: Instrument Description: Instruments that quantify carbon, nitrogen and sometimes other elements by combusting the sample at very high temperature and assaying the resulting gaseous oxides. Usually used for samples including organic material. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB01/
Thermo Delta V.
Thermo Delta V.
PI Supplied Instrument Name: Thermo Delta V. PI Supplied Instrument Description:Paired with a Gas Chromatograph (GC) and used for leaf lipids (University of Washington). Instrument Name: Isotope-ratio Mass Spectrometer Instrument Short Name:IR Mass Spec; IRMS Instrument Description: The Isotope-ratio Mass Spectrometer is a particular type of mass spectrometer used to measure the relative abundance of isotopes in a given sample (e.g. VG Prism II Isotope Ratio Mass-Spectrometer). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB16/
Thermo Delta V.
Thermo Delta V.
PI Supplied Instrument Name: Thermo Delta V. PI Supplied Instrument Description:Paired with a Temperature Conversion Elemental Analyzer (TC/EA) and used for leaf water and xylem water (Unversity of Basel) Instrument Name: Isotope-ratio Mass Spectrometer Instrument Short Name:IR Mass Spec; IRMS Instrument Description: The Isotope-ratio Mass Spectrometer is a particular type of mass spectrometer used to measure the relative abundance of isotopes in a given sample (e.g. VG Prism II Isotope Ratio Mass-Spectrometer). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB16/
Deployment: Ongael_2013-09
Ongael_2013-09
shoreside Palau
island
Ongael_2013-09
Julian P. Sachs
University of Washington
shoreside Palau
island