http://lod.bco-dmo.org/id/dataset/716126
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-10-04
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Sample log of coral biopsy specimens for genetic analysis of algal symbionts collected from Galapagos and Panama by divers, 2014-2017 (Response of ETP to ENSO)
2017-10-04
publication
2017-10-04
revision
BCO-DMO Linked Data URI
2017-10-04
creation
http://lod.bco-dmo.org/id/dataset/716126
Andrew Baker
University of Miami Rosenstiel School of Marine and Atmospheric Science
principalInvestigator
Peter Glynn
University of Miami Rosenstiel School of Marine and Atmospheric Science
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Baker, A., Glynn, P. (2017) Sample log of coral biopsy specimens for genetic analysis of algal symbionts collected from Galapagos and Panama by divers, 2014-2017 (Response of ETP to ENSO). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2017-10-04 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/716126 [access date]
Sample log of coral biopsy specimens for genetic analysis of algal symbionts Dataset Description: <p>This dataset includes a sample log of coral specimens collected for genetic analysis of algal symbionts by divers near the Galapagos and Panama between August 2014 and March 2017.</p> Methods and Sampling: <p>Samples were extracted for downstream DNA analyses using a bulk DNA extraction protocol. See&nbsp;protocols.io at&nbsp;<a href="https://dx.doi.org/10.17504/protocols.io.dyq7vv">dx.doi.org/10.17504/protocols.io.dyq7vv</a>&nbsp;or local PDF: "<a href="http://dmoserv3.bco-dmo.org/data_docs/Response_of_ETP_to_ENSO/Bulk-gDNA-extraction-from-coral-samples-dyq7vv.pdf" target="_blank">Bulk gDNA extraction from coral samples</a>"</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1447306 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1447306
onGoing
Andrew Baker
University of Miami Rosenstiel School of Marine and Atmospheric Science
(305) 421-4642
University of Miami Rosenstiel School of Marine and Atmospheric Science 600 Rickenbacker Cswy.
Miami
FL
33149
USA
abaker@earth.miami.edu
pointOfContact
Peter Glynn
University of Miami Rosenstiel School of Marine and Atmospheric Science
305-421-4134
Division of Marine Biology and Fisheries, RSMAS, U of Miami 4600 Rickenbacker Causeway
Miami
FL
33149
pglynn@rsmas.miami.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Country
Site
Location
Sample
Depth
Species
Tag
Photo
Collection_date
Dive
Diver
Notes
SCUBA
theme
None, User defined
region
site
sample identification
depth
species scientific name (binomial)
tagid
No BCO-DMO term
date
dive_id
person name
comments
featureType
BCO-DMO Standard Parameters
Camera
Self-Contained Underwater Breathing Apparatus
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Tropical Eastern Pacific Coral Reefs
https://osprey.bco-dmo.org/program/514212
Tropical Eastern Pacific Coral Reefs
TEP Corals
largerWorkCitation
program
Are Eastern Tropical Pacific reefs becoming more resilient to ENSO?
https://osprey.bco-dmo.org/project/516487
Are Eastern Tropical Pacific reefs becoming more resilient to ENSO?
<p><em>Description from NSF award abstract:</em><br />
The predicted 2014-2015 El Niño Southern Oscillation (ENSO) event may develop into one of the strongest in recent history, presenting a unique and urgent opportunity to investigate the impact of this extreme thermal anomaly on the resilience of coral reef ecosystems. Building on baseline data from >40 years of research in the Eastern Tropical Pacific (ETP), this team of researchers is uniquely poised to test hypotheses about coral reef resilience to the third strong event to hit this region. Ecological resilience is defined as both the ability of an ecosystem to continue functioning while under stress as well as the ability of a system to "bounce back" or restore structure and function following a disturbance. This project is guided by the overarching hypothesis that many ETP coral reefs are becoming more resilient in the face of multiple major ENSO disturbances as a result of adaptive processes. If the investigators are correct that reef systems can develop more tolerance and recover more rapidly when subjected to sequential thermal disturbances, this will drastically change predictions of the fate of global coral reef ecosystems over the next 100 years of climate change.</p>
<p>This RAPID funding will provide an unprecedented opportunity to further our understanding of the potential for increased resistance to, and accelerated early recovery from, the third major ENSO to hit the ETP. The investigators have developed hypotheses that can be tested by targeted sampling and experiments in the critical stages before, during and after this ENSO on reefs in Panamá (Uva, Saboga) and Galápagos (Darwin Floreana). These reefs span a gradient in aragonite saturation that provides a real-world model system for conditions expected throughout the tropics in a high-CO2 world. Key mechanisms/hypotheses that the investigators will evaluate that may increase resilience, and therefore reduce mortality and limit the loss of ecosystem functioning following this ENSO, include: (1) increases in the relative abundance of thermotolerant symbionts will result in higher survival and faster recovery of multiple coral species across all depths; (2) recovery will be inversely rated to pCO2 with a threshold level beyond which recovery does not occur; (3) the maintenance of strong top-down control by intact herbivore communities will limit algal proliferation, and (4) the strengthening of nutrient-limitation in shallow regions will limit algal competitive abilities and aid coral recovery. At each site where there is a record of recovery the research team will make the following ovservations: (1) in situ measurement of physical parameters (temperature, conductivity, pH, dissolved oxygen, photosynthetically active radiation, chlorophyll, turbidity, inorganic nutrients); (2) in situ measurement of carbonate chemistry and net ecosystem metabolism (calcification, production); (3) In situ measurements of coral and reef community responses including coral bleaching and mortality and the population responses of corallivores, bioeroders, herbivores, and benthic algal cover; (4) quantification of symbiont communities in major coral species before, during and after the bleaching event to compare with archived samples from the 1997-98 event; (5) bioassays of the strength of top-down (herbivory) and bottom-up (nutrient limitation) effects that may promote ecosystem resilience with critical limits. To further explore these limits, in the southern Galápagos, where there is a lack of resilience, the investigative team will deploy temperature loggers, conduct surveys of bleaching and mortality of remnant coral communities, and conduct bioassays of the strength of herbivory and nutrient limitation.</p>
Response of ETP to ENSO
largerWorkCitation
project
eng; USA
biota
oceans
2014-08-17
2014-08-17
Tropical Eastern Pacific
0
BCO-DMO catalogue of parameters from Sample log of coral biopsy specimens for genetic analysis of algal symbionts collected from Galapagos and Panama by divers, 2014-2017 (Response of ETP to ENSO)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/716133.rdf
Name: Country
Units: unitless
Description: <p>country of collection</p>
http://lod.bco-dmo.org/id/dataset-parameter/716134.rdf
Name: Site
Units: unitless
Description: <p>collection site</p>
http://lod.bco-dmo.org/id/dataset-parameter/716135.rdf
Name: Location
Units: unitless
Description: <p>collection location</p>
http://lod.bco-dmo.org/id/dataset-parameter/716136.rdf
Name: Sample
Units: unitless
Description: <p>sample identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/716137.rdf
Name: Depth
Units: unitless
Description: <p>coral species</p>
http://lod.bco-dmo.org/id/dataset-parameter/716138.rdf
Name: Species
Units: meters
Description: <p>collection depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/716139.rdf
Name: Tag
Units: unitless
Description: <p>sample tag number</p>
http://lod.bco-dmo.org/id/dataset-parameter/716140.rdf
Name: Photo
Units: unitless
Description: <p>photograph identification number</p>
http://lod.bco-dmo.org/id/dataset-parameter/716141.rdf
Name: Collection_date
Units: unitless
Description: <p>collection date formattee as m/d/yyyy</p>
http://lod.bco-dmo.org/id/dataset-parameter/716142.rdf
Name: Dive
Units: unitless
Description: <p>dive number</p>
http://lod.bco-dmo.org/id/dataset-parameter/716143.rdf
Name: Diver
Units: unitless
Description: <p>diver name</p>
http://lod.bco-dmo.org/id/dataset-parameter/716144.rdf
Name: Notes
Units: unitless
Description: <p>comments pertaining to collection and samples</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
167355
https://datadocs.bco-dmo.org/file/wnnxzVZF0lVRl5/coral_biopsy_sample_log.csv
coral_biopsy_sample_log.csv
Primary data file for dataset ID 716126
download
https://osprey.bco-dmo.org/dataset/716126/data/download
download
onLine
dataset
<p>Samples were extracted for downstream DNA analyses using a bulk DNA extraction protocol. See&nbsp;protocols.io at&nbsp;<a href="https://dx.doi.org/10.17504/protocols.io.dyq7vv">dx.doi.org/10.17504/protocols.io.dyq7vv</a>&nbsp;or local PDF: "<a href="http://dmoserv3.bco-dmo.org/data_docs/Response_of_ETP_to_ENSO/Bulk-gDNA-extraction-from-coral-samples-dyq7vv.pdf" target="_blank">Bulk gDNA extraction from coral samples</a>"</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing Notes:</strong><br />
- added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions<br />
- date format expanded to 4-digit year<br />
- removed single quotes from Sample records<br />
- replaced spaces with underscores in Location, Sample, and Species columns<br />
- replaced – with hyphen, -<br />
- blank cells were replaced by 'nd' (no data)</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: PI Supplied Instrument Description:Used to photograph the specimens. Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/
SCUBA
SCUBA
PI Supplied Instrument Name: SCUBA Instrument Name: Self-Contained Underwater Breathing Apparatus Instrument Short Name:SCUBA Instrument Description: The self-contained underwater breathing apparatus or scuba diving system is the result of technological developments and innovations that began almost 300 years ago. Scuba diving is the most extensively used system for breathing underwater by recreational divers throughout the world and in various forms is also widely used to perform underwater work for military, scientific, and commercial purposes.
Reference: https://oceanexplorer.noaa.gov/technology/technical/technical.html