http://lod.bco-dmo.org/id/dataset/718585
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-11-03
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Cell counts of symbionts in Muricea atlantica, M. elongata, and Plexaurella dichotoma across the 2015 Bleaching event (May 2015 to August 2017) at Long Key in the Florida Keys
2017-11-29
publication
2017-11-29
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2023-07-18
publication
https://doi.org/10.26008/1912/bco-dmo.718585.3
Mary Alice Coffroth
State University of New York at Buffalo
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Coffroth, M. A. (2023) Cell counts of symbionts in Muricea atlantica, M. elongata, and Plexaurella dichotoma across the 2015 Bleaching event (May 2015 to August 2017) at Long Key in the Florida Keys. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2017-11-29 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.718585.3 [access date]
Bleached Octocoral Symbiont Cell Counts Dataset Description: Methods and Sampling: <p>Location:&nbsp;&nbsp;<br />
Two patch reefs in the vicinity of Long Key in the Florida Keys (CMF-N24.44.704, W 80 46.793 and SC2- N24 49.478 W80 41.187).<br />
<br />
Sampling and Analytical Methodology:&nbsp;&nbsp;<br />
Except for M. atlantica, which was not sampled in May 2015, tagged colonies were sampled in September 2015 (during bleaching), November 2015, March 2016, May 2016, September 2016, November 2016, March 2017 and August 2017 (after bleaching).&nbsp; Symbiont density within coral tissues was determined for each collection. Coral tissue was preserved in 1.0 ml of 5% formalin.&nbsp; For each sample, the length and diameter of each sample were measured to the nearest 0.1 mm using vernier calipers, and the tissue then homogenized in distilled water. The density of symbiont cells in the homogenate was counted at least 4 consecutive times, using standard hemocytometer procedures and converted to cells per tissue volume using the formula for a cylinder to calculate tissue volume.<br />
<br />
Taxonomic identifiers (Genus species, LSID):<br />
Muricea atlantica,&nbsp;urn:lsid:marinespecies.org:taxname:287554<br />
Muricea elongata,&nbsp;urn:lsid:marinespecies.org:taxname:287559<br />
Plexaurella dichotoma,&nbsp;urn:lsid:marinespecies.org:taxname:290812</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1552949 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1552949
completed
Mary Alice Coffroth
State University of New York at Buffalo
716-645-4871
Department of Geology 126 Cooke Hall
Buffalo
NY
14260
USA
Coffroth@buffalo.edu
pointOfContact
asNeeded
Dataset Version: 3
Unknown
species
year_collection
month_collection
Colony
Site
lat
lon
height
diameter
vol
count_1
count_2
count_3
count_4
count_avg
count_stdev
total_cells_in_sample
cells_vol_tissue
comment
theme
None, User defined
species scientific name (binomial)
year
month of year
sample identification
site
latitude
longitude
height
width
sample_volume
count
cell_concentration
comments
featureType
BCO-DMO Standard Parameters
Microscope - Optical
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
RAPID: Variations in symbiont diversity in octocoral across seasons and a predicted bleaching event
https://osprey.bco-dmo.org/project/632780
RAPID: Variations in symbiont diversity in octocoral across seasons and a predicted bleaching event
<p><em>Description from NSF award abstract:</em><br />
Within the marine environment microorganisms form one of the most important marine symbioses in the world: the symbiosis between corals and photosynthetic single-celled algal symbionts. In nutrient poor waters of the tropics, this symbiosis maintains the coral's high productivity, allowing corals to flourish and provides the foundation of the coral reef ecosystem. However, these reefs are currently threatened by anthropogenic-induced perturbations (i.e., global warming, overfishing, pollution). In fact, corals and their associated biodiversity on reefs are being lost at an alarming rate, especially in the Caribbean, where coral cover has declined by 80% over the last thirty years. Much of this decline has been attributed to coral bleaching, a loss of these algal symbionts in response to increase ocean temperatures. Octocorals, in contrast, do not show this decline and are increasing in relative abundance and importance in the Caribbean as scleractinian corals decline. Part of this has been attributed to the fact that bleaching is rarer among octocorals. However, during recent warming events (2005, 2010 and 2014) bleaching was reported in many octocoral host species. Although a great deal is known about bleaching among scleractinian (hard) corals, virtually nothing is known of this phenomenon among octocorals (sea fans, sea whips, sea feathers, etc.). Their growing importance on Caribbean reefs and the lack of knowledge of their response to "bleaching" creates an urgency to understand the dynamics of these algal symbiont populations within octocorals during periods of scleractinian bleaching. Bleaching susceptibility varies among host species and this has been attributed in part to the type of algal symbiont that they contain. In this project, specific octocoral colonies will be followed over the course of a year and symbiont type determined using molecular techniques. These data will be used to determine if bleaching susceptibility is related to symbiont type. This project will significantly add to an understanding of cnidarian-algal symbioses that form the foundation of the coral reef ecosystem. Octocorals dominate many Caribbean reefs and serve as structure and habitat for numerous fish and invertebrates. These data will contribute to our understanding of how these symbioses function and allow for a comparative study with bleaching among other cnidarians. This work will include the training of undergraduate and graduate students, dissemination of the findings to the general public through a collaboration with the Aquarium of Niagara, and sharing of an extensive symbiont culture collection with the scientific community.</p>
<p>Coral bleaching has been an important component of the dynamics on coral reefs for the past 3 decades. Although a great deal is known about bleaching among scleractinian corals, virtually nothing is known of this phenomenon among octocorals. As scleractinian abundance is declining, the relative abundance of octocorals has remained more constant. Part of that success is likely due to a seemingly lower sensitivity of these cnidarians to bleaching conditions. However, the contrast in octocoral bleaching between the 20th century events and those of more recent years suggests that thermal events of increasing frequency and/or intensity will affect octocorals as well and that octocoral sensitivity does vary between species. Thus projecting how octocoral communities will fare requires a greater understanding of variation in their sensitivity to bleaching and the basis of that variation. One potential source of that variation is in the algal symbiont type that these species harbor. Symbiont diversity among Caribbean octocorals is lower than that of scleractinian species with the vast majority of Caribbean octocorals harboring symbionts in the B1-ITS2 lineage which is composed of multiple Symbiodinium species. The aim of this project is to identify symbiont variation within octocoral species before, during and after a predicted bleaching event and to compare symbiont type with bleaching susceptibility. To do this, specific octocoral colonies will be followed over the course of a year and symbiont density and phylotype determined. Colonies from three host species, Plexaurella dichotoma, Muricea muricata and Eunicea flexuosa will be tagged (20 per species at each of 2 reefs) and sampled every 3 months. Symbiont density will be determined through cell counts using a hemocytometer and symbiont phylotype identified using markers that resolve among the different symbiont species in the B1 lineage (i.e., Sym15 flanker, ITS and chloroplast 23S rDNA). If bleaching is not observed in these colonies, these data will inform the diversity within an understudied group and provide information on seasonal change in these symbionts and variation within and between host species. Understanding the dynamics of octocoral bleaching is important. If octocorals are more resistant to bleaching, this may explain observations of increasing abundance. As coral cover declines, these species represent more of the living cover and are often the visually dominant organism on reefs. Furthermore, octocorals are fast growing and have the potential to colonize open space and help to stabilize the ecosystem by providing habitat for other reef organisms.</p>
Octocoral symbiont diversity
largerWorkCitation
project
eng; USA
biota
oceans
-80.77988
-80.68645
24.74507
24.82463
2015-09-01
2017-08-01
Florida Keys
0
BCO-DMO catalogue of parameters from Cell counts of symbionts in Muricea atlantica, M. elongata, and Plexaurella dichotoma across the 2015 Bleaching event (May 2015 to August 2017) at Long Key in the Florida Keys
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/897273.rdf
Name: species
Units: unitless
Description: <p>Host coral colony species</p>
http://lod.bco-dmo.org/id/dataset-parameter/897274.rdf
Name: year_collection
Units: unitless
Description: <p>Year in which the sample was collected.</p>
http://lod.bco-dmo.org/id/dataset-parameter/897275.rdf
Name: month_collection
Units: unitless
Description: <p>Month in which the sample was collected (Full month name).</p>
http://lod.bco-dmo.org/id/dataset-parameter/897276.rdf
Name: Colony
Units: unitless
Description: <p>Identification of the octocoral host colony that was sampled across the study</p>
http://lod.bco-dmo.org/id/dataset-parameter/897277.rdf
Name: Site
Units: unitless
Description: <p>Location where collected (lat and lon in degrees decimal minutes)</p>
http://lod.bco-dmo.org/id/dataset-parameter/897278.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude where were sample collected</p>
http://lod.bco-dmo.org/id/dataset-parameter/897279.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude where were sample collected</p>
http://lod.bco-dmo.org/id/dataset-parameter/897280.rdf
Name: height
Units: millimeters (mm)
Description: <p>Height/length of the tissue sample that was used for cell counts</p>
http://lod.bco-dmo.org/id/dataset-parameter/897281.rdf
Name: diameter
Units: millimeters (mm)
Description: <p>Diameter of the tissue sample that was used for cell counts</p>
http://lod.bco-dmo.org/id/dataset-parameter/897282.rdf
Name: vol
Units: cubic millimeters (mm^3)
Description: <p>Volume of the tissue sample that was used for cell counts – calculated as that of a cylinder</p>
http://lod.bco-dmo.org/id/dataset-parameter/897283.rdf
Name: count_1
Units: unitless
Description: <p>First replicate of sample counted</p>
http://lod.bco-dmo.org/id/dataset-parameter/897284.rdf
Name: count_2
Units: unitless
Description: <p>Second replicate of sample counted</p>
http://lod.bco-dmo.org/id/dataset-parameter/897285.rdf
Name: count_3
Units: unitless
Description: <p>Third replicate of sample counted</p>
http://lod.bco-dmo.org/id/dataset-parameter/897286.rdf
Name: count_4
Units: cells per 0.1 microliter (Cells/0.1 uL)
Description: <p>Fourth replicate of sample counted</p>
http://lod.bco-dmo.org/id/dataset-parameter/897287.rdf
Name: count_avg
Units: cells per 0.1 microliter (Cells/0.1 uL)
Description: <p>Mean of counts</p>
http://lod.bco-dmo.org/id/dataset-parameter/897288.rdf
Name: count_stdev
Units: cells per 0.1 microliter (Cells/0.1 uL)
Description: <p>Standard deviation of count</p>
http://lod.bco-dmo.org/id/dataset-parameter/897289.rdf
Name: total_cells_in_sample
Units: cells per 0.1 milliliter (Cells/0.1 mL)
Description: <p>Mean adjusted to total cells per ml in which the tissue homogenized</p>
http://lod.bco-dmo.org/id/dataset-parameter/897290.rdf
Name: cells_vol_tissue
Units: cells per cubic centimeter of tissue (Cells/cm3 tissue)
Description: <p>Total cells in sample based on sample tissue volume</p>
http://lod.bco-dmo.org/id/dataset-parameter/897291.rdf
Name: comment
Units: unitless
Description: <p>"DEAD" or "dead" indicate colony missing or skeleton located but dead. Comments also indicate if "no sample."</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
75255
https://darchive.mblwhoilibrary.org/server/api/core/bitstreams/df1932aa-9ca2-4301-8ea2-c7234fe1795e/content
download
https://doi.org/10.26008/1912/bco-dmo.718585.3
download
onLine
dataset
<p>Location:&nbsp;&nbsp;<br />
Two patch reefs in the vicinity of Long Key in the Florida Keys (CMF-N24.44.704, W 80 46.793 and SC2- N24 49.478 W80 41.187).<br />
<br />
Sampling and Analytical Methodology:&nbsp;&nbsp;<br />
Except for M. atlantica, which was not sampled in May 2015, tagged colonies were sampled in September 2015 (during bleaching), November 2015, March 2016, May 2016, September 2016, November 2016, March 2017 and August 2017 (after bleaching).&nbsp; Symbiont density within coral tissues was determined for each collection. Coral tissue was preserved in 1.0 ml of 5% formalin.&nbsp; For each sample, the length and diameter of each sample were measured to the nearest 0.1 mm using vernier calipers, and the tissue then homogenized in distilled water. The density of symbiont cells in the homogenate was counted at least 4 consecutive times, using standard hemocytometer procedures and converted to cells per tissue volume using the formula for a cylinder to calculate tissue volume.<br />
<br />
Taxonomic identifiers (Genus species, LSID):<br />
Muricea atlantica,&nbsp;urn:lsid:marinespecies.org:taxname:287554<br />
Muricea elongata,&nbsp;urn:lsid:marinespecies.org:taxname:287559<br />
Plexaurella dichotoma,&nbsp;urn:lsid:marinespecies.org:taxname:290812</p>
Specified by the Principal Investigator(s)
<p>Mean x 10000 were calculated from the counts and mean cell counts per volume was calculated using the formula for a cylinder to calculate tissue volume.&nbsp;<br />
<br />
<strong>BCO-DMO Processing Notes:</strong><br />
- added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions<br />
- added species, year_collection, lat, and lon columns<br />
- blank values were replaced with no data value 'nd'</p>
<p>Version 2: 2017-11-29 replaces version 1: 2017-11-02 which only contained M.&nbsp;atlantica&nbsp;counts.<br />
<br />
Version 3: 2023-06-05 replaces version 2: 2017-11-29<br />
* Version 2 included the first year of the study, version 3 includes all years of the study.&nbsp; Researchers should not use the previous version as it may contain errors.&nbsp;&nbsp;Eunicea flexuosa removed from dataset.<br />
*&nbsp;Combined all subtables within the three Cell Count&lt;species&gt;_ALL.xlsx files that were submitted 2023-05-22 with subtables by species, and collection month.&nbsp; Submitter made further edits to the combined data&nbsp;and the resulting table contained within&nbsp;Cell_Counts_ALL_BCO-DMO_REVISED.xlsx was uploaded to BCO-DMO as the primary table in this dataset.<br />
*&nbsp;Additional columns species,month_collection, year_collection, added from information in suitable headers.&nbsp;<br />
*&nbsp;"Column" column added and "DEAD" values in height column moved there and removed from height column.<br />
* lat lon in decimal degree columns extracted from degrees decimal minutes provided within text of "site" column.<br />
* rounded lat and lon to 5 decimal places<br />
* rounded volume to 2 decimal places as was used in the original excel formatting.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: PI Supplied Instrument Description:Used to count symbiont cells Instrument Name: Microscope - Optical Instrument Short Name: Instrument Description: Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope". Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB05/