http://lod.bco-dmo.org/id/dataset/719743
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-11-20
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Benthic Ecosystem and Acidification Measuring System (BEAMS) data from two Bermuda sites collected during 2015 (BEAMS project)
2017-11-21
publication
2017-11-21
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-01-14
publication
https://doi.org/10.1575/1912/bco-dmo.719743.1
Yuichiro Takeshita
Monterey Bay Aquarium Research Institute
principalInvestigator
Todd R. Martz
University of California-San Diego Scripps
principalInvestigator
Wade McGillis
Columbia University
principalInvestigator
Nichole N. Price
Bigelow Laboratory for Ocean Sciences
principalInvestigator
Jennifer Smith
University of California-San Diego Scripps
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Takeshita, Y., Martz, T., McGillis, W., Price, N., Smith, J. (2017) Benthic Ecosystem and Acidification Measuring System (BEAMS) data from two Bermuda sites collected during 2015 (BEAMS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2017-11-21 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.719743.1 [access date]
BEAMS data from Hog Reef and Bailey’s Bay, Bermuda from 2015 Dataset Description: <p>This dataset was collected using the Benthic Ecosystem and Acidification Measuring System (BEAMS) at Hog&nbsp;Reef and Bailey’s Bay, Bermuda in 2015.</p>
<p><strong>Related publication:</strong><br />
Takeshita, Y., Cyronak, T., Martz, T. R., Andersson, A. 2017. Drivers of variability of coral reef carbonate chemistry across different functional scales, <em>In prep</em>.&nbsp;</p> Methods and Sampling: <p>This dataset was collected using the Benthic Ecosystem and Acidification Measuring System (BEAMS). The details of this technique and dataset can be found in the reference provided below (Takeshita et al. 2016), but are also&nbsp;summarized briefly here.</p>
<p>BEAMS uses autonomous sensors to quantify mean gradients of pH and O2 and the current velocity profile in the benthic boundary layer (BBL) to calculate benthic fluxes of&nbsp;O2 (NCP) and TA (NCC). The NCP and NCC provided here represent metabolic rates under completely natural (e.g. flow and light) conditions.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1316006 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1316006
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1316047 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1316047
completed
Yuichiro Takeshita
Monterey Bay Aquarium Research Institute
7700 Sandholdt Road
Moss Landing
CA
95039
USA
yui@mbari.org
pointOfContact
Todd R. Martz
University of California-San Diego Scripps
858-534-7466
9500 Gilman Drive Mail Stop 0244
La Jolla
CA
92093
USA
trmartz@ucsd.edu
pointOfContact
Wade McGillis
Columbia University
845-365-8562
Lamont-Doherty Earth Observatory Columbia University
Palisades
NY
10964-8000
USA
wrm2102@columbia.edu
pointOfContact
Nichole N. Price
Bigelow Laboratory for Ocean Sciences
60 Bigelow Dr,
East Boothbay
ME
04544
USA
nprice@bigelow.org
pointOfContact
Jennifer Smith
University of California-San Diego Scripps
858-246-0803
Scripps Institution of Oceanography, UCSD 9500 Gilman Drive
La Jolla
CA
92093-0202
USA
smithj@ucsd.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
site
site_name
lat
lon
ISO_DateTime
pH_0_7m
pH_0_4m
pH_0_2m
Temperature_0_7m
Temperature_0_4m
Temperature_0_2m
DOXY_0_7m
DOXY_0_4m
DOXY_0_2m
PAR
Pressure
U0
SAL
NCP
NCC_Q_0_8
NCC_Q_0_9
NCC_Q_1_0
NCC_Q_1_1
NCC_Q_1_2
theme
None, User defined
Site_ID
site
latitude
longitude
Date and time
pH
water temperature at measurement depth
dissolved Oxygen
PAR
water pressure
curr_speed_rel
salinity
production
calcification
featureType
BCO-DMO Standard Parameters
Flow Meter
Light Meter
Oxygen Sensor
pH Sensor
instrument
BCO-DMO Standard Instruments
BEAMS_Bermuda
service
Deployment Activity
Bailey's Bay and Hog Reef, Bermuda
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Quantifying the potential for biogeochemical feedbacks to create 'refugia' from ocean acidification on tropical coral reefs
https://osprey.bco-dmo.org/project/651861
Quantifying the potential for biogeochemical feedbacks to create 'refugia' from ocean acidification on tropical coral reefs
<p><em>Description from NSF award abstract:</em><br />
Rising sea surface temperatures and ocean acidification (OA) may threaten the ability of calcified organisms to build carbonate reefs, but it is unclear if particular reefs have the capacity to tolerate global change. Current understanding of the effects of OA on coral reefs originates from single-species laboratory studies largely focused on scleractinian corals. Traditionally, these experiments attempt to mimic static future conditions under the assumption that coastal regimes are as constant as -- and will acidify at the same rate as -- open ocean surface waters. Predictions based on these oversimplified scenarios are unrealistic because numerous benthic organisms, including calcifiers and primary producers, significantly alter the bulk seawater carbonate chemistry over a diurnal cycle. Further, the prevalence of recently appreciated extreme diel fluctuations in pH across some reefs suggests that benthic species may be acclimated to future carbonate conditions.</p>
<p>To look for potential OA refugia on reefs, a research team from the Scripps Institute of Oceanography (University of California at San Diego) and the Lamont Dougherty Earth Observatory (Columbia University) will undertake a unique mechanistic study on Palmyra Atoll, a remote uninhabited island in the central Pacific that lacks degradation from local human influence. They will explore the strengths and controls of biogeochemical feedbacks from coral reef benthic community assemblages to the seawater chemistry above and experimentally determine how this natural fluctuation affects physiological responses of key taxa to OA. Specifically they will: (1) tightly integrate a novel benthic flux technique in situ that allows continuous, high-temporal resolution measurements of net ecosystem metabolic rates (production and calcification) with an ongoing high spatial resolution benthic community dynamics study to quantify feedbacks of known species assemblages to observed natural spatiotemporal variability in seawater carbonate chemistry; and (2) use small scale common garden CO2 enrichment experiments and productivity/respiration assays in the lab paired with reciprocal transplant experiments in situ to empirically quantify the effects of elevated and/or fluctuating pCO2 on growth, calcification and photophysiology of common framework building organisms and their benthic competitors. This should allow them to examine the coupled interactions between OA and diverse benthic coral reef organisms in their natural environment in the absence of other confounding human impacts.</p>
BEAMS
largerWorkCitation
project
eng; USA
oceans
Bailey's Bay and Hog Reef, Bermuda
-64.845
-64.725
32.35
32.457
2015-07-21
2015-07-29
0
BCO-DMO catalogue of parameters from Benthic Ecosystem and Acidification Measuring System (BEAMS) data from two Bermuda sites collected during 2015 (BEAMS project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/719814.rdf
Name: site
Units: unitless
Description: <p>Identifier of the site where data were collectd.</p>
http://lod.bco-dmo.org/id/dataset-parameter/719815.rdf
Name: site_name
Units: unitless
Description: <p>Full name of the site where data were collectd.</p>
http://lod.bco-dmo.org/id/dataset-parameter/719816.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude of the site; N is positive.</p>
http://lod.bco-dmo.org/id/dataset-parameter/719817.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude of the site; E is positive.</p>
http://lod.bco-dmo.org/id/dataset-parameter/719818.rdf
Name: ISO_DateTime
Units: unitless
Description: <p>Date and time data were collected; formatted to ISO8601 standard: yyyy-mm-ddTHH:MM:SS</p>
http://lod.bco-dmo.org/id/dataset-parameter/719819.rdf
Name: pH_0_7m
Units: unitless (pH scale)
Description: <p>in situ pH on the total hydrogen ion scale at 0.7 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719820.rdf
Name: pH_0_4m
Units: unitless (pH scale)
Description: <p>in situ pH on the total hydrogen ion scale at 0.4 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719821.rdf
Name: pH_0_2m
Units: unitless (pH scale)
Description: <p>in situ pH on the total hydrogen ion scale at 0.2 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719822.rdf
Name: Temperature_0_7m
Units: degrees Celsius
Description: <p>Temperature in Celsius at 0.7 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719823.rdf
Name: Temperature_0_4m
Units: degrees Celsius
Description: <p>Temperature in Celsius at 0.4 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719824.rdf
Name: Temperature_0_2m
Units: degrees Celsius
Description: <p>Temperature in Celsius at 0.2 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719825.rdf
Name: DOXY_0_7m
Units: micromoles O2 per kilogram (umol kg-1)
Description: <p>Dissolved O2 at 0.7 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719826.rdf
Name: DOXY_0_4m
Units: micromoles O2 per kilogram (umol kg-1)
Description: <p>Dissolved O2 at 0.4 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719827.rdf
Name: DOXY_0_2m
Units: micromoles O2 per kilogram (umol kg-1)
Description: <p>Dissolved O2 at 0.2 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719828.rdf
Name: PAR
Units: micromoles photons per square meter per second (umol photons m-2 s-1)
Description: <p>Photosynthetically Available Radiation</p>
http://lod.bco-dmo.org/id/dataset-parameter/719829.rdf
Name: Pressure
Units: decibars
Description: <p>Pressure</p>
http://lod.bco-dmo.org/id/dataset-parameter/719830.rdf
Name: U0
Units: meters per second (m s-1)
Description: <p>Current speed at 1.0 m above benthos</p>
http://lod.bco-dmo.org/id/dataset-parameter/719831.rdf
Name: SAL
Units: unitless
Description: <p>Practical salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/719832.rdf
Name: NCP
Units: millimoles O2 per square meter per hour (mmol O2 m-2 hr-1)
Description: <p>Net Community Production</p>
http://lod.bco-dmo.org/id/dataset-parameter/719833.rdf
Name: NCC_Q_0_8
Units: millimoles CaCO2 per square meter per hour (mmol CaCO3 m-2 hr-1)
Description: <p>Net Community Calcification calculated using Q of 0.8</p>
http://lod.bco-dmo.org/id/dataset-parameter/719834.rdf
Name: NCC_Q_0_9
Units: mmol CaCO3 m-2 hr-1
Description: <p>Net Community Calcification calculated using Q of 0.9</p>
http://lod.bco-dmo.org/id/dataset-parameter/719835.rdf
Name: NCC_Q_1_0
Units: mmol CaCO3 m-2 hr-1
Description: <p>Net Community Calcification calculated using Q of 1.0</p>
http://lod.bco-dmo.org/id/dataset-parameter/719836.rdf
Name: NCC_Q_1_1
Units: mmol CaCO3 m-2 hr-1
Description: <p>Net Community Calcification calculated using Q of 1.1</p>
http://lod.bco-dmo.org/id/dataset-parameter/719837.rdf
Name: NCC_Q_1_2
Units: mmol CaCO3 m-2 hr-1
Description: <p>Net Community Calcification calculated using Q of 1.2</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
156194
https://darchive.mblwhoilibrary.org/bitstream/1912/25150/1/dataset-719743_benthic-and-acidification-data-bermuda__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.719743.1
download
onLine
dataset
<p>This dataset was collected using the Benthic Ecosystem and Acidification Measuring System (BEAMS). The details of this technique and dataset can be found in the reference provided below (Takeshita et al. 2016), but are also&nbsp;summarized briefly here.</p>
<p>BEAMS uses autonomous sensors to quantify mean gradients of pH and O2 and the current velocity profile in the benthic boundary layer (BBL) to calculate benthic fluxes of&nbsp;O2 (NCP) and TA (NCC). The NCP and NCC provided here represent metabolic rates under completely natural (e.g. flow and light) conditions.</p>
Specified by the Principal Investigator(s)
<p>Questionable rates have been removed through a quality control procedure described in Takeshita et al. 2016. Briefly, 1) measurements when the benthic boundary layer was stratified were removed, and 2) Spikes in the data were removed based on the observed delta pH/ delta O2 relationship.</p>
<p><strong>BCO-DMO Processing:</strong><br />
- replaced "NaN" with "nd" (no data);<br />
- combined 2 datasets (one from each site) into one file;<br />
- Added site lat/lon values from the metadata provided;<br />
- Converted original Date_Time field to ISO_DateTime.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: Instrument Name: Flow Meter Instrument Short Name:Flow Meter Instrument Description: General term for a sensor that quantifies the rate at which fluids (e.g. water or air) pass through sensor packages, instruments, or sampling devices. A flow meter may be mechanical, optical, electromagnetic, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/388/
PI Supplied Instrument Name: Instrument Name: Light Meter Instrument Short Name:Light Meter Instrument Description: Light meters are instruments that measure light intensity. Common units of measure for light intensity are umol/m2/s or uE/m2/s (micromoles per meter squared per second or microEinsteins per meter squared per second). (example: LI-COR 250A)
PI Supplied Instrument Name: Instrument Name: Oxygen Sensor Instrument Short Name:Dissolved Oxygen Sensor Instrument Description: An electronic device that measures the proportion of oxygen (O2) in the gas or liquid being analyzed
PI Supplied Instrument Name: Instrument Name: pH Sensor Instrument Short Name:pH Sensor Instrument Description: An instrument that measures the hydrogen ion activity in solutions.
The overall concentration of hydrogen ions is inversely related to its pH. The pH scale ranges from 0 to 14 and indicates whether acidic (more H+) or basic (less H+).
Deployment: BEAMS_Bermuda
BEAMS_Bermuda
shoreside Bermuda
shoreside
BEAMS_Bermuda
Yuichiro Takeshita
Monterey Bay Aquarium Research Institute
shoreside Bermuda
shoreside