http://lod.bco-dmo.org/id/dataset/719960
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-11-27
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Angola weekly cholera incidence at the province level collected from 2016-02-13 to 2016-05-29 (Cholera_Disease_Dyn project)
2017-11-28
publication
2017-11-28
revision
BCO-DMO Linked Data URI
2017-11-28
creation
http://lod.bco-dmo.org/id/dataset/719960
Professor Joseph Tien
Ohio State University
principalInvestigator
Marisa C Eisenberg
University of Michigan
principalInvestigator
Professor David N Fisman
University of Toronto
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Tien, J., Eisenberg, M. C., Fisman, D. N. (2017) Angola weekly cholera incidence at the province level collected from 2016-02-13 to 2016-05-29 (Cholera_Disease_Dyn project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2017-11-28 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/719960 [access date]
Cholera in Angola Dataset Description: <p>This dataset includes weekly cholera incidence data collected by the Angola Ministry of Health and compiled by the World Health Organization&nbsp;Cholera Task Force collected at the province level from Feb. 13th to May 29th, 2016.&nbsp;</p>
<p>These data were published in:<br />
Eisenberg M, Robertson SL, Tien JH (2013).&nbsp; Identifiability and estimation of multiple transmission pathways in cholera and waterborne disease.&nbsp; J. Theoretical Biology 324: 84-102. doi:&nbsp;<a href="http://doi.org/10.1016/j.jtbi.2012.12.021" target="_blank">10.1016/j.jtbi.2012.12.021</a> </p>
<div>Other relevant publication:</div>
<div>Lee EC et al (2017), Model distinguishability and inference robustness in mechanisms of cholera transmission and loss of immunity.&nbsp; J. Theoretical Biology 420: 68-81. doi: <a href="https://doi.org/10.1016/j.jtbi.2017.01.032" target="_blank">10.1016/j.jtbi.2017.01.032</a></div> Methods and Sampling: <p>Cholera incidence reported by the Angola Ministry of Health.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1115881 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1115881
completed
Professor Joseph Tien
Ohio State University
614-688-8735
Department of Mathematics 231 W. 18th Avenue
Columbus
OH
43210
USA
tien.20@osu.edu
pointOfContact
Marisa C Eisenberg
University of Michigan
734-936-1310 / 734-763-2991
Epidemiology 1415 Washington Heights
Ann Arbor
MI
48109-2029
USA
marisae@umich.edu
pointOfContact
Professor David N Fisman
University of Toronto
416 978 6866
Division of Epidemiology, Dalla Lana School of Public Health 155 College Street
Toronto
Ontario
M5T 3M7
Canada
david.fisman@utoronto.ca
pointOfContact
asNeeded
Unknown
year_from
month_from
day_from
year_to
month_to
day_to
year_frac
Bengo
Benguela
Bie
K_Norte
K_Sul
Luanda
Huambo
Malange
Namibe
Zaire
Huila
Uige
Cabinda
TOTAL
theme
None, User defined
year
month of year
day of month
No BCO-DMO term
count
featureType
BCO-DMO Standard Parameters
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Modeling the Effects of Heterogeneity in Water Quality on Cholera Disease Dynamics
https://osprey.bco-dmo.org/project/630176
Modeling the Effects of Heterogeneity in Water Quality on Cholera Disease Dynamics
<p>Funding was requested to analyze and model cholera epidemics. In order to accomplish this task, the team will analyze spatio-temporal data from cholera outbreaks in Haiti (2010), Angola (2006) and London (1832); develop mathematical theory for coupled patch models of waterborne disease; and develop models to predict disease spread under different scenarios. The study will explore the contribution of humans (direct) and of environmental (delayed) pathways to disease transmission and investigate how heterogeneity in water quality, which is ubiquitous in developing countries, affects cholera disease dynamics. This project will advance understanding of the factors governing the spatial spread of cholera, examine how the arrangement and connectivity between cholera risk hot spots influence disease spread and develop a modeling framework for rapid response to a cholera crisis.</p>
<p>The proposed study has clear practical and theoretical significance for understanding and predicting not only cholera transmission, but other waterborne diseases as well, reaching beyond the specific study system. The team will develop mathematical theory for coupled patch models of waterborne diseases and advance understanding of the effects of movement of individuals and of water to cholera transmission. The team will also explore inclusion of data from early stages of an outbreak on parameter estimates and whether information on water quality and availability and on types of sanitation facilities available can be used to improve knowledge of model parameters before the disease has reached a given area.</p>
<p>This study will result in the training of undergraduates and graduate students, and include outreach to the Columbus Science Pub (public), Cornell's Summer Math Institute (undergraduates) and the UCLA Math Circle (grades K-12). This project will strengthen international scientific collaboration through interaction with scientists and students from the University of Toronto.</p>
<p>The research from this study will provide society benefits through improved understanding of the factors influencing the ability of cholera to invade, spread and persist in a region. The proposed study will provide a tool to predict disease spread under different scenarios for rapid response to a cholera crisis and evaluate the efficacy of different intervention strategies on containing cholera spatial spread. The team will interact and communicate their research findings to the Centers for Disease Control and the National Biosurveillance Integration Center within the Department of Homeland Security. They will collaborate with the United Nations University Institute for Water, Environment and Health to compile a database of time series data from cholera outbreaks worldwide, in association with data on water quality, water availability, and sanitation facilities from several outbreak locales.</p>
Cholera_Disease_Dyn
largerWorkCitation
project
eng; USA
biota
11.6792
24.0821
-18.0421
-4.3726
2016-02-13
2016-05-29
Haiti, Angola and London
0
BCO-DMO catalogue of parameters from Angola weekly cholera incidence at the province level collected from 2016-02-13 to 2016-05-29 (Cholera_Disease_Dyn project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/720041.rdf
Name: year_from
Units: unitless
Description: <p>Starting year of weekly cholera incidence count in format yyyy</p>
http://lod.bco-dmo.org/id/dataset-parameter/720042.rdf
Name: month_from
Units: unitless
Description: <p>Starting month of weekly cholera incidence count in format mm</p>
http://lod.bco-dmo.org/id/dataset-parameter/720043.rdf
Name: day_from
Units: unitless
Description: <p>Starting day of weekly cholera incidence count in format dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/720044.rdf
Name: year_to
Units: unitless
Description: <p>Ending year of weekly cholera incidence count in format yyyy</p>
http://lod.bco-dmo.org/id/dataset-parameter/720045.rdf
Name: month_to
Units: unitless
Description: <p>Ending month of weekly cholera incidence count in format mm</p>
http://lod.bco-dmo.org/id/dataset-parameter/720046.rdf
Name: day_to
Units: unitless
Description: <p>Ending day of weekly cholera incidence count in format dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/720047.rdf
Name: year_frac
Units: unitless
Description: <p>Fractional year for stop date of the weekly incidence data in format yyyy + fraction of year (example: week ending on Jan 7, 2006 (the first week of the year) 1/52 = .019. So value would be 2006.019.</p>
http://lod.bco-dmo.org/id/dataset-parameter/720048.rdf
Name: Bengo
Units: count per incidence
Description: <p>Weekly cholera incidence count in Bengo province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720049.rdf
Name: Benguela
Units: count per incidence
Description: <p>Weekly cholera incidence count in Benguela province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720050.rdf
Name: Bie
Units: count per incidence
Description: <p>Weekly cholera incidence count in Bie province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720051.rdf
Name: K_Norte
Units: count per incidence
Description: <p>Weekly cholera incidence count in Kuanza Norte province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720052.rdf
Name: K_Sul
Units: count per incidence
Description: <p>Weekly cholera incidence count in Kuanza Sul province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720053.rdf
Name: Luanda
Units: count per incidence
Description: <p>Weekly cholera incidence count in Luanda province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720054.rdf
Name: Huambo
Units: count per incidence
Description: <p>Weekly cholera incidence count in Huambo province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720055.rdf
Name: Malange
Units: count per incidence
Description: <p>Weekly cholera incidence count in Malange province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720056.rdf
Name: Namibe
Units: count per incidence
Description: <p>Weekly cholera incidence count in Namibe province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720057.rdf
Name: Zaire
Units: count per incidence
Description: <p>Weekly cholera incidence count in Zaire province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720058.rdf
Name: Huila
Units: count per incidence
Description: <p>Weekly cholera incidence count in Huila province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720059.rdf
Name: Uige
Units: count per incidence
Description: <p>Weekly cholera incidence count in Uige province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720060.rdf
Name: Cabinda
Units: count per incidence
Description: <p>Weekly cholera incidence count in Cabinda province</p>
http://lod.bco-dmo.org/id/dataset-parameter/720061.rdf
Name: TOTAL
Units: count per incidence
Description: <p>Total weekly cholera incidence for all 13 provinces</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
1215
https://datadocs.bco-dmo.org/file/M77XPw3szZVArJ/angola_cholera.csv
angola_cholera.csv
Primary data file for dataset ID 719960
download
https://osprey.bco-dmo.org/dataset/719960/data/download
download
onLine
dataset
<p>Cholera incidence reported by the Angola Ministry of Health.</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Data Manager Processing Notes:<br />
* added a conventional header with dataset name, PI name, version date<br />
* modified parameter names to conform with BCO-DMO naming conventions (spaces and periods changed to underscores)</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact