http://lod.bco-dmo.org/id/dataset/720669
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2017-12-08
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Porewater sulfate from samples collected by pushcore from Guaymas Basin hydrothermal sediments on R/V Atlantis cruise AT37-06 in the Guaymas Basin in December 2016
2017-12-08
publication
2017-12-08
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-01-14
publication
https://doi.org/10.1575/1912/bco-dmo.720669.1
Andreas Teske
University of North Carolina at Chapel Hill
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Teske, A. (2017) Porewater sulfate from samples collected by pushcore from Guaymas Basin hydrothermal sediments on R/V Atlantis cruise AT37-06 in the Guaymas Basin in December 2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2017-12-08 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.720669.1 [access date]
Porewater sulfate from samples collected by pushcore from Guaymas Basin hydrothermal sediments on cruise AT37-06 Dataset Description: <p>Porewater sulfate from samples collected by pushcore from Guaymas Basin hydrothermal sediments on cruise AT37-06 in December 2016.</p>
<p>Publications associated with this project are as follows:<br />
Schutte, C.A., A. Teske, B.J. MacGregor, V. Salman-Carvalho, G. Lavik, and D. de Beer<strong>. </strong>Filamentous giant <em>Beggiatoaceae</em> from Guaymas Basin are capable of both denitrification and dissimilatory nitrate reduction to ammonium (DNRA). For submission.</p> Methods and Sampling: <p>Sampling and Analytical Methodology: Freshly collected sediment cores were sliced on the ship into 3 cm layers; porewater was obtained by gently centrifuging freshly collected sediment in 50 ml conical Falcon tubes for ca. 5 to 10 minutes until the sediment had settled; one Falcon tube produced ca. 8 to 10 ml of porewater. For porewater sulfate measurements, 1 ml subsamples of the overlying porewater were drawn into syringes and injected through 0.45 μm filters into screw cap Eppendorf vials, each acidified with 50 µl of 6N HCl, and then gently bubbled with nitrogen for 4 min to remove sulfide; the samples were then stored at 4ºC before shipping and analysis.</p>
<p>Geochemical Analyses:&nbsp;SO4 was analyzed on a Dionex ICS-1000 using a RFIC IonPac AS22 4 X 250mm column and a RFIC IonPac AG22 Guard column 4 X 50 mm. The IC was calibrated using a 5 point std curve and a minimum r^2 value of 0.999. The MDL measured at 0.10 ppm SO4. A check standard from a 1000 ppm was made fom a Dionex 7 anion standard to a concentration of 15 ppm. An external Standard from HACH 100 ppm SO4 was used to make a 20 ppm QC standard. In general, QCs were analyzed for 10% of the samples.</p>
<p>Data Processing: The porewater data of Guaymas Basin sand Sonora Margin piston cores were tabulated in Excel sheets.</p>
<p>Quality Control: Note that Sample_IDs "D7A_10X_CKS" are internal quality control standards (15.5 mg/L) and&nbsp;Sample_IDs "DI_SPK" are external quality control standards (20.0 mg/L).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1357238 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1357238
completed
Andreas Teske
University of North Carolina at Chapel Hill
508-287-1648
Department of Marine Sciences 3117B Venable Hall, CB 3300
Chapel Hill
NC
27599
USA
teske@email.unc.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Sample_ID
Sulfate_Concentration
Dionex ICS-1000
theme
None, User defined
sample identification
sulfate
featureType
BCO-DMO Standard Parameters
Alvin tube core
Ion Chromatograph
instrument
BCO-DMO Standard Instruments
AT37-06
service
Deployment Activity
Guaymas Basin
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: Microbial Carbon cycling and its interactions with Sulfur and Nitrogen transformations in Guaymas Basin hydrothermal sediments
https://osprey.bco-dmo.org/project/474317
Collaborative Research: Microbial Carbon cycling and its interactions with Sulfur and Nitrogen transformations in Guaymas Basin hydrothermal sediments
<p><em>Description from NSF award abstract:</em><br />
Hydrothermally active sediments in the Guaymas Basin are dominated by novel microbial communities that catalyze important biogeochemical processes in these seafloor ecosystems. This project will investigate genomic potential, physiological capabilities and biogeochemical roles of key uncultured organisms from Guaymas sediments, especially the high-temperature anaerobic methane oxidizers that occur specifically in hydrothermally active sediments (ANME-1Guaymas). The study will focus on their role in carbon transformations, but also explore their potential involvement in sulfur and nitrogen transformations. First-order research topics include quantifying anaerobic methane oxidation under high temperature,in situ concentrations of phosphorus and methane , and with alternate electron acceptors; sulfate and sulfur-dependent microbial pathways and isotopic signatures under these conditions; and nitrogen transformations in methane-oxidizing microbial communities, hydrothermal mats and sediments.</p>
<p>This integrated biogeochemical and microbiological research will explore the pathways of and environmental controls on the consumption and production of methane, other alkanes, inorganic carbon, organic acids and organic matter that fuel the Guaymas sedimentary microbial ecosystem. The hydrothermal sediments of Guaymas Basin provide a spatially compact, high-activity location for investigating novel modes of methane cycling and carbon assimilation into microbial biomass. In the case of anaerobic methane oxidation, the high temperature and pressure tolerance of Guaymas Basin methane-oxidizing microbial communities, and their potential to uncouple from the dominant electron acceptor sulfate, vastly increase the predicted subsurface habitat space and biogeochemical role for anaerobic microbial methanotrophy in global deep subsurface diagenesis. Further, microbial methane production and oxidation interlocks with syulfur and nitrogen transformations, which will be explored at the organism and process level in hydrothermal sediment microbial communities and mats of Guaymas Basin. In general, first-order research tasks (rate measurements, radiotracer incorporation studies, genomes, in situ microgradients) define the key microbial capabilities, pathways and processes that mediate chemical exchange between the subsurface hydrothermal/seeps and deep ocean waters.</p>
Guaymas Basin Interactions
largerWorkCitation
project
eng; USA
oceans
Guaymas Basin
-111
-111
27
27
2017-12-08
Guaymas Basin, Gulf of California, 27.00 N, 111.00W
0
BCO-DMO catalogue of parameters from Porewater sulfate from samples collected by pushcore from Guaymas Basin hydrothermal sediments on R/V Atlantis cruise AT37-06 in the Guaymas Basin in December 2016
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/720893.rdf
Name: Sample_ID
Units: unitless
Description: <p>Sample identification number</p>
http://lod.bco-dmo.org/id/dataset-parameter/720894.rdf
Name: Sulfate_Concentration
Units: millimoles per liter (mMol/L)
Description: <p>Sulfate concentration</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
1038
https://darchive.mblwhoilibrary.org/bitstream/1912/25148/1/dataset-720669_at37-06-porewater-so4__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.720669.1
download
onLine
dataset
<p>Sampling and Analytical Methodology: Freshly collected sediment cores were sliced on the ship into 3 cm layers; porewater was obtained by gently centrifuging freshly collected sediment in 50 ml conical Falcon tubes for ca. 5 to 10 minutes until the sediment had settled; one Falcon tube produced ca. 8 to 10 ml of porewater. For porewater sulfate measurements, 1 ml subsamples of the overlying porewater were drawn into syringes and injected through 0.45 μm filters into screw cap Eppendorf vials, each acidified with 50 µl of 6N HCl, and then gently bubbled with nitrogen for 4 min to remove sulfide; the samples were then stored at 4ºC before shipping and analysis.</p>
<p>Geochemical Analyses:&nbsp;SO4 was analyzed on a Dionex ICS-1000 using a RFIC IonPac AS22 4 X 250mm column and a RFIC IonPac AG22 Guard column 4 X 50 mm. The IC was calibrated using a 5 point std curve and a minimum r^2 value of 0.999. The MDL measured at 0.10 ppm SO4. A check standard from a 1000 ppm was made fom a Dionex 7 anion standard to a concentration of 15 ppm. An external Standard from HACH 100 ppm SO4 was used to make a 20 ppm QC standard. In general, QCs were analyzed for 10% of the samples.</p>
<p>Data Processing: The porewater data of Guaymas Basin sand Sonora Margin piston cores were tabulated in Excel sheets.</p>
<p>Quality Control: Note that Sample_IDs "D7A_10X_CKS" are internal quality control standards (15.5 mg/L) and&nbsp;Sample_IDs "DI_SPK" are external quality control standards (20.0 mg/L).</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Processing:&nbsp;<br />
- modified parameter names (replaced spaces with underscores);<br />
- replaced commas in Sample_ID column with semi-colons.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: Instrument Name: Alvin tube core Instrument Short Name:Tube Core Instrument Description: A plastic tube, about 40 cm (16 inches) long, is pushed into the sediment by Alvin's manipulator arm to collect a sediment core.
Dionex ICS-1000
Dionex ICS-1000
PI Supplied Instrument Name: Dionex ICS-1000 PI Supplied Instrument Description:SO4 was analyzed on a Dionex ICS-1000 using a RFIC IonPac AS22 4 X 250mm column and a RFIC IonPac AG22 Guard column 4 X 50 mm. Instrument Name: Ion Chromatograph Instrument Short Name:Ion Chromatograph Instrument Description: Ion chromatography is a form of liquid chromatography that measures concentrations of ionic species by separating them based on their interaction with a resin. Ionic species separate differently depending on species type and size. Ion chromatographs are able to measure concentrations of major anions, such as fluoride, chloride, nitrate, nitrite, and sulfate, as well as major cations such as lithium, sodium, ammonium, potassium, calcium, and magnesium in the parts-per-billion (ppb) range. (from http://serc.carleton.edu/microbelife/research_methods/biogeochemical/ic.html)
Cruise: AT37-06
AT37-06
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT37-06
Andreas Teske
University of North Carolina at Chapel Hill
https://datadocs.bco-dmo.org/d3/data_docs/GuaymasBasin_Interactions/AT37-06_CruiseReport.pdf
Report describing AT37-06
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel